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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 113 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 977 |
| Acc36I | ACCTGC | 1 cut(s) | 113 |
| AccB1I | GGYRCC | 2 cut(s) | 1007, 1088 |
| AccII | CGCG | 3 cut(s) | 26, 59, 201 |
| AciI | CCGC | 5 cut(s) | 24, 167, 201, 328, 610 |
| AclWI | GGATC | 2 cut(s) | 124, 870 |
| AcoI | YGGCCR | 1 cut(s) | 168 |
| AcsI | RAATTY | 2 cut(s) | 677, 1156 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 35, 928, 929, 1033, 1037 |
| AgsI | TTSAA | 2 cut(s) | 625, 1124 |
| AjnI | CCWGG | 3 cut(s) | 204, 378, 1093 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 537, 569 |
| AluBI | AGCT | 5 cut(s) | 404, 410, 428, 811, 821 |
| AluI | AGCT | 5 cut(s) | 404, 410, 428, 811, 821 |
| Alw21I | GWGCWC | 1 cut(s) | 813 |
| Alw26I | GTCTC | 2 cut(s) | 541, 745 |
| AlwI | GGATC | 2 cut(s) | 124, 870 |
| Ama87I | CYCGRG | 1 cut(s) | 368 |
| AoxI | GGCC | 9 cut(s) | 21, 39, 168, 202, 229, 239, 342, 931, 1145 |
| ApaI | GGGCCC | 1 cut(s) | 935 |
| ApeKI | GCWGC | 9 cut(s) | 61, 64, 86, 101, 133, 136, 213, 428, 1103 |
| ApoI | RAATTY | 2 cut(s) | 677, 1156 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 654 |
| AspA2I | CCTAGG | 1 cut(s) | 1031 |
| AspLEI | GCGC | 4 cut(s) | 28, 59, 61, 201 |
| AspS9I | GGNCC | 5 cut(s) | 39, 239, 931, 932, 979 |
| AsuHPI | GGTGA | 5 cut(s) | 43, 185, 205, 1094, 1102 |
| AvaI | CYCGRG | 1 cut(s) | 368 |
| AvaII | GGWCC | 1 cut(s) | 979 |
| AvrII | CCTAGG | 1 cut(s) | 1031 |
| BaeGI | GKGCMC | 3 cut(s) | 922, 935, 1010 |
| BanI | GGYRCC | 2 cut(s) | 1007, 1088 |
| BanII | GRGCYC | 2 cut(s) | 813, 935 |
| BbsI | GAAGAC | 2 cut(s) | 522, 725 |
| Bbv12I | GWGCWC | 1 cut(s) | 813 |
| BbvI | GCAGC | 9 cut(s) | 48, 73, 76, 88, 145, 148, 200, 415, 1090 |
| BccI | CCATC | 9 cut(s) | 135, 218, 341, 464, 591, 745, 1031, 1079, 1083 |
| BciT130I | CCWGG | 3 cut(s) | 206, 380, 1095 |
| BciVI | GTATCC | 2 cut(s) | 352, 954 |
| BcoDI | GTCTC | 2 cut(s) | 541, 745 |
| BfaI | CTAG | 5 cut(s) | 161, 375, 587, 899, 1032 |
| BfmI | CTRYAG | 2 cut(s) | 62, 120 |
| BfuAI | ACCTGC | 1 cut(s) | 113 |
| BfuI | GTATCC | 2 cut(s) | 352, 954 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 437 |
| BlnI | CCTAGG | 1 cut(s) | 1031 |
| Bme1390I | CCNGG | 3 cut(s) | 206, 380, 1095 |
| Bme18I | GGWCC | 1 cut(s) | 979 |
| BmeT110I | CYCGRG | 1 cut(s) | 368 |
| BmgT120I | GGNCC | 5 cut(s) | 39, 239, 931, 932, 979 |
| BmiI | GGNNCC | 7 cut(s) | 40, 240, 756, 933, 934, 1009, 1090 |
| BmrFI | CCNGG | 3 cut(s) | 206, 380, 1095 |
| BmsI | GCATC | 1 cut(s) | 343 |
| BpiI | GAAGAC | 2 cut(s) | 522, 725 |
| BpmI | CTGGAG | 1 cut(s) | 69 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1142 |
| BpuEI | CTTGAG | 2 cut(s) | 323, 390 |
| BsaI | GGTCTC | 1 cut(s) | 541 |
| BsaJI | CCNNGG | 5 cut(s) | 42, 879, 1031, 1062, 1093 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 35, 928, 929, 1033, 1037 |
| Bse118I | RCCGGY | 2 cut(s) | 28, 170 |
| Bse1I | ACTGG | 2 cut(s) | 242, 298 |
| BseBI | CCWGG | 3 cut(s) | 206, 380, 1095 |
| BseDI | CCNNGG | 5 cut(s) | 42, 879, 1031, 1062, 1093 |
| BseGI | GGATG | 7 cut(s) | 255, 388, 459, 487, 561, 849, 1042 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 35, 928, 929, 1033, 1037 |
| BseMII | CTCAG | 1 cut(s) | 1156 |
| BseNI | ACTGG | 2 cut(s) | 242, 298 |
| BsePI | GCGCGC | 1 cut(s) | 57 |
| BseRI | GAGGAG | 1 cut(s) | 203 |
| BseSI | GKGCMC | 3 cut(s) | 922, 935, 1010 |
| BseX3I | CGGCCG | 1 cut(s) | 168 |
| BseXI | GCAGC | 9 cut(s) | 48, 73, 76, 88, 145, 148, 200, 415, 1090 |
| Bsh1236I | CGCG | 3 cut(s) | 26, 59, 201 |
| Bsh1285I | CGRYCG | 2 cut(s) | 96, 171 |
| BshFI | GGCC | 9 cut(s) | 23, 41, 170, 204, 231, 241, 344, 933, 1147 |
| BshNI | GGYRCC | 2 cut(s) | 1007, 1088 |
| BsiEI | CGRYCG | 2 cut(s) | 96, 171 |
| BsiHKAI | GWGCWC | 1 cut(s) | 813 |
| BsiHKCI | CYCGRG | 1 cut(s) | 368 |
| BsiSI | CCGG | 3 cut(s) | 29, 171, 232 |
| BslFI | GGGAC | 1 cut(s) | 1190 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 35, 928, 929, 1033, 1037 |
| BsmAI | GTCTC | 2 cut(s) | 541, 745 |
| BsmBI | CGTCTC | 1 cut(s) | 745 |
| BsmFI | GGGAC | 1 cut(s) | 1190 |
| BsnI | GGCC | 9 cut(s) | 23, 41, 170, 204, 231, 241, 344, 933, 1147 |
| Bso31I | GGTCTC | 1 cut(s) | 541 |
| BsoBI | CYCGRG | 1 cut(s) | 368 |
| Bsp120I | GGGCCC | 1 cut(s) | 931 |
| Bsp1286I | GDGCHC | 4 cut(s) | 813, 922, 935, 1010 |
| Bsp143I | GATC | 5 cut(s) | 93, 116, 182, 693, 875 |
| Bsp19I | CCATGG | 1 cut(s) | 1062 |
| BspACI | CCGC | 5 cut(s) | 24, 167, 201, 328, 610 |
| BspANI | GGCC | 9 cut(s) | 23, 41, 170, 204, 231, 241, 344, 933, 1147 |
| BspCNI | CTCAG | 1 cut(s) | 1155 |
| BspFNI | CGCG | 3 cut(s) | 26, 59, 201 |
| BspHI | TCATGA | 2 cut(s) | 319, 805 |
| BspLI | GGNNCC | 7 cut(s) | 40, 240, 756, 933, 934, 1009, 1090 |
| BspMAI | CTGCAG | 2 cut(s) | 66, 124 |
| BspMI | ACCTGC | 1 cut(s) | 113 |
| BspPI | GGATC | 2 cut(s) | 124, 870 |
| BspT107I | GGYRCC | 2 cut(s) | 1007, 1088 |
| BspTNI | GGTCTC | 1 cut(s) | 541 |
| BsrFI | RCCGGY | 2 cut(s) | 28, 170 |
| BsrI | ACTGG | 2 cut(s) | 242, 298 |
| BssAI | RCCGGY | 2 cut(s) | 28, 170 |
| BssECI | CCNNGG | 5 cut(s) | 42, 879, 1031, 1062, 1093 |
| BssHII | GCGCGC | 1 cut(s) | 57 |
| BssMI | GATC | 5 cut(s) | 93, 116, 182, 693, 875 |
| BssT1I | CCWWGG | 2 cut(s) | 1031, 1062 |
| Bst2UI | CCWGG | 3 cut(s) | 206, 380, 1095 |
| Bst4CI | ACNGT | 2 cut(s) | 394, 1045 |
| BstC8I | GCNNGC | 4 cut(s) | 59, 84, 332, 402 |
| BstDEI | CTNAG | 5 cut(s) | 433, 759, 955, 1142, 1209 |
| BstDSI | CCRYGG | 2 cut(s) | 879, 1062 |
| BstF5I | GGATG | 7 cut(s) | 255, 388, 459, 487, 561, 849, 1042 |
| BstFNI | CGCG | 3 cut(s) | 26, 59, 201 |
| BstHHI | GCGC | 4 cut(s) | 28, 59, 61, 201 |
| BstKTI | GATC | 5 cut(s) | 96, 119, 185, 696, 878 |
| BstMAI | GTCTC | 2 cut(s) | 541, 745 |
| BstMBI | GATC | 5 cut(s) | 93, 116, 182, 693, 875 |
| BstMCI | CGRYCG | 2 cut(s) | 96, 171 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 210, 416, 425, 437, 446, 1177 |
| BstNI | CCWGG | 3 cut(s) | 206, 380, 1095 |
| BstSCI | CCNGG | 3 cut(s) | 204, 378, 1093 |
| BstSFI | CTRYAG | 2 cut(s) | 62, 120 |
| BstSLI | GKGCMC | 3 cut(s) | 922, 935, 1010 |
| BstUI | CGCG | 3 cut(s) | 26, 59, 201 |
| BstV1I | GCAGC | 9 cut(s) | 48, 73, 76, 88, 145, 148, 200, 415, 1090 |
| BstV2I | GAAGAC | 2 cut(s) | 522, 725 |
| BstX2I | RGATCY | 2 cut(s) | 116, 875 |
| BstYI | RGATCY | 2 cut(s) | 116, 875 |
| BstZI | CGGCCG | 1 cut(s) | 168 |
| BsuI | GTATCC | 2 cut(s) | 352, 954 |
| BsuRI | GGCC | 9 cut(s) | 23, 41, 170, 204, 231, 241, 344, 933, 1147 |
| BtgI | CCRYGG | 2 cut(s) | 879, 1062 |
| BtgZI | GCGATG | 2 cut(s) | 154, 719 |
| BtsCI | GGATG | 7 cut(s) | 255, 388, 459, 487, 561, 849, 1042 |
| BveI | ACCTGC | 1 cut(s) | 113 |
| Cac8I | GCNNGC | 4 cut(s) | 59, 84, 332, 402 |
| CciI | TCATGA | 2 cut(s) | 319, 805 |
| CfoI | GCGC | 4 cut(s) | 28, 59, 61, 201 |
| Cfr10I | RCCGGY | 2 cut(s) | 28, 170 |
| Cfr13I | GGNCC | 5 cut(s) | 39, 239, 931, 932, 979 |
| CseI | GACGC | 1 cut(s) | 1147 |
| CviAII | CATG | 6 cut(s) | 320, 806, 842, 1055, 1063, 1079 |
| DdeI | CTNAG | 5 cut(s) | 433, 759, 955, 1142, 1209 |
| DpnI | GATC | 5 cut(s) | 95, 118, 184, 695, 877 |
| DpnII | GATC | 5 cut(s) | 93, 116, 182, 693, 875 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 977 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 977 |
| EaeI | YGGCCR | 1 cut(s) | 168 |
| EagI | CGGCCG | 1 cut(s) | 168 |
| EciI | GGCGGA | 1 cut(s) | 317 |
| Ecl136II | GAGCTC | 1 cut(s) | 811 |
| EclXI | CGGCCG | 1 cut(s) | 168 |
| Eco130I | CCWWGG | 2 cut(s) | 1031, 1062 |
| Eco147I | AGGCCT | 1 cut(s) | 1147 |
| Eco24I | GRGCYC | 2 cut(s) | 813, 935 |
| Eco31I | GGTCTC | 1 cut(s) | 541 |
| Eco32I | GATATC | 1 cut(s) | 325 |
| Eco47I | GGWCC | 1 cut(s) | 979 |
| Eco52I | CGGCCG | 1 cut(s) | 168 |
| Eco53kI | GAGCTC | 1 cut(s) | 811 |
| Eco88I | CYCGRG | 1 cut(s) | 368 |
| EcoICRI | GAGCTC | 1 cut(s) | 811 |
| EcoO109I | RGGNCCY | 2 cut(s) | 931, 932 |
| EcoRI | GAATTC | 1 cut(s) | 677 |
| EcoRII | CCWGG | 3 cut(s) | 204, 378, 1093 |
| EcoRV | GATATC | 1 cut(s) | 325 |
| EcoT14I | CCWWGG | 2 cut(s) | 1031, 1062 |
| EcoT38I | GRGCYC | 2 cut(s) | 813, 935 |
| ErhI | CCWWGG | 2 cut(s) | 1031, 1062 |
| Esp3I | CGTCTC | 1 cut(s) | 745 |
| FaeI | CATG | 6 cut(s) | 323, 809, 845, 1058, 1066, 1082 |
| FaqI | GGGAC | 1 cut(s) | 1190 |
| FatI | CATG | 6 cut(s) | 319, 805, 841, 1054, 1062, 1078 |
| FokI | GGATG | 7 cut(s) | 262, 395, 446, 494, 548, 836, 1049 |
| FriOI | GRGCYC | 2 cut(s) | 813, 935 |
| FspBI | CTAG | 5 cut(s) | 161, 375, 587, 899, 1032 |
| GlaI | GCGC | 4 cut(s) | 27, 58, 60, 200 |
| GsuI | CTGGAG | 1 cut(s) | 69 |
| HaeIII | GGCC | 9 cut(s) | 23, 41, 170, 204, 231, 241, 344, 933, 1147 |
| HapII | CCGG | 3 cut(s) | 29, 171, 232 |
| HgaI | GACGC | 1 cut(s) | 1147 |
| HhaI | GCGC | 4 cut(s) | 28, 59, 61, 201 |
| Hin1II | CATG | 6 cut(s) | 323, 809, 845, 1058, 1066, 1082 |
| Hin6I | GCGC | 4 cut(s) | 26, 57, 59, 199 |
| HinP1I | GCGC | 4 cut(s) | 26, 57, 59, 199 |
| HindIII | AAGCTT | 1 cut(s) | 408 |
| HinfI | GANTC | 7 cut(s) | 351, 469, 485, 569, 721, 792, 902 |
| HpaII | CCGG | 3 cut(s) | 29, 171, 232 |
| HphI | GGTGA | 5 cut(s) | 43, 185, 205, 1094, 1102 |
| Hpy166II | GTNNAC | 1 cut(s) | 1021 |
| Hpy188I | TCNGA | 5 cut(s) | 187, 261, 301, 649, 1137 |
| Hpy188III | TCNNGA | 8 cut(s) | 247, 320, 368, 581, 806, 873, 899, 968 |
| Hpy8I | GTNNAC | 1 cut(s) | 1021 |
| Hpy99I | CGWCG | 1 cut(s) | 72 |
| HpyAV | CCTTC | 1 cut(s) | 997 |
| HpyCH4III | ACNGT | 2 cut(s) | 394, 1045 |
| HpyCH4IV | ACGT | 1 cut(s) | 972 |
| HpyCH4V | TGCA | 6 cut(s) | 64, 122, 216, 746, 785, 1106 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 210, 416, 425, 437, 446, 1177 |
| HpyF3I | CTNAG | 5 cut(s) | 433, 759, 955, 1142, 1209 |
| HpySE526I | ACGT | 1 cut(s) | 972 |
| Hsp92II | CATG | 6 cut(s) | 323, 809, 845, 1058, 1066, 1082 |
| HspAI | GCGC | 4 cut(s) | 26, 57, 59, 199 |
| Kzo9I | GATC | 5 cut(s) | 93, 116, 182, 693, 875 |
| LmnI | GCTCC | 4 cut(s) | 54, 283, 495, 818 |
| Lsp1109I | GCAGC | 9 cut(s) | 48, 73, 76, 88, 145, 148, 200, 415, 1090 |
| LweI | GCATC | 1 cut(s) | 343 |
| MaeI | CTAG | 5 cut(s) | 161, 375, 587, 899, 1032 |
| MaeII | ACGT | 1 cut(s) | 972 |
| MaeIII | GTNAC | 2 cut(s) | 566, 778 |
| MalI | GATC | 5 cut(s) | 95, 118, 184, 695, 877 |
| MboI | GATC | 5 cut(s) | 93, 116, 182, 693, 875 |
| MboII | GAAGA | 4 cut(s) | 524, 527, 730, 871 |
| MflI | RGATCY | 2 cut(s) | 116, 875 |
| MhlI | GDGCHC | 4 cut(s) | 813, 922, 935, 1010 |
| MluCI | AATT | 7 cut(s) | 266, 363, 677, 771, 868, 907, 1156 |
| MlyI | GAGTC | 3 cut(s) | 463, 563, 715 |
| MroXI | GAANNNNTTC | 1 cut(s) | 654 |
| MseI | TTAA | 3 cut(s) | 663, 671, 714 |
| MslI | CAYNNNNRTG | 5 cut(s) | 464, 854, 1053, 1080, 1083 |
| MspI | CCGG | 3 cut(s) | 29, 171, 232 |
| MspR9I | CCNGG | 3 cut(s) | 206, 380, 1095 |
| MvaI | CCWGG | 3 cut(s) | 206, 380, 1095 |
| MvnI | CGCG | 3 cut(s) | 26, 59, 201 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 210, 416, 425, 437, 446, 1177 |
| NcoI | CCATGG | 1 cut(s) | 1062 |
| NdeII | GATC | 5 cut(s) | 93, 116, 182, 693, 875 |
| NlaIII | CATG | 6 cut(s) | 323, 809, 845, 1058, 1066, 1082 |
| NlaIV | GGNNCC | 7 cut(s) | 40, 240, 756, 933, 934, 1009, 1090 |
| NmeAIII | GCCGAG | 1 cut(s) | 67 |
| NmuCI | GTSAC | 1 cut(s) | 566 |
| PaeR7I | CTCGAG | 1 cut(s) | 368 |
| PagI | TCATGA | 2 cut(s) | 319, 805 |
| PaqCI | CACCTGC | 1 cut(s) | 113 |
| PauI | GCGCGC | 1 cut(s) | 57 |
| PceI | AGGCCT | 1 cut(s) | 1147 |
| PdmI | GAANNNNTTC | 1 cut(s) | 654 |
| PfeI | GAWTC | 4 cut(s) | 351, 485, 792, 902 |
| Ple19I | CGATCG | 1 cut(s) | 96 |
| PleI | GAGTC | 3 cut(s) | 463, 563, 715 |
| PpsI | GAGTC | 3 cut(s) | 463, 563, 715 |
| Psp124BI | GAGCTC | 1 cut(s) | 813 |
| Psp6I | CCWGG | 3 cut(s) | 204, 378, 1093 |
| PspGI | CCWGG | 3 cut(s) | 204, 378, 1093 |
| PspN4I | GGNNCC | 7 cut(s) | 40, 240, 756, 933, 934, 1009, 1090 |
| PspOMI | GGGCCC | 1 cut(s) | 931 |
| PspPI | GGNCC | 5 cut(s) | 39, 239, 931, 932, 979 |
| PstI | CTGCAG | 2 cut(s) | 66, 124 |
| PsuI | RGATCY | 2 cut(s) | 116, 875 |
| PteI | GCGCGC | 1 cut(s) | 57 |
| PvuI | CGATCG | 1 cut(s) | 96 |
| RseI | CAYNNNNRTG | 5 cut(s) | 464, 854, 1053, 1080, 1083 |
| SacI | GAGCTC | 1 cut(s) | 813 |
| SaqAI | TTAA | 3 cut(s) | 663, 671, 714 |
| Sau3AI | GATC | 5 cut(s) | 93, 116, 182, 693, 875 |
| Sau96I | GGNCC | 5 cut(s) | 39, 239, 931, 932, 979 |
| SchI | GAGTC | 3 cut(s) | 463, 563, 715 |
| ScrFI | CCNGG | 3 cut(s) | 206, 380, 1095 |
| SduI | GDGCHC | 4 cut(s) | 813, 922, 935, 1010 |
| SfaNI | GCATC | 1 cut(s) | 343 |
| SfcI | CTRYAG | 2 cut(s) | 62, 120 |
| Sfr274I | CTCGAG | 1 cut(s) | 368 |
| SgrAI | CRCCGGYG | 1 cut(s) | 28 |
| SinI | GGWCC | 1 cut(s) | 979 |
| SlaI | CTCGAG | 1 cut(s) | 368 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 464, 854, 1053, 1080, 1083 |
| SmlI | CTYRAG | 3 cut(s) | 338, 368, 405 |
| SmoI | CTYRAG | 3 cut(s) | 338, 368, 405 |
| Sse9I | AATT | 7 cut(s) | 266, 363, 677, 771, 868, 907, 1156 |
| SseBI | AGGCCT | 1 cut(s) | 1147 |
| SsiI | CCGC | 5 cut(s) | 24, 167, 201, 328, 610 |
| SspMI | CTAG | 5 cut(s) | 161, 375, 587, 899, 1032 |
| SstI | GAGCTC | 1 cut(s) | 813 |
| StuI | AGGCCT | 1 cut(s) | 1147 |
| StyD4I | CCNGG | 3 cut(s) | 204, 378, 1093 |
| StyI | CCWWGG | 2 cut(s) | 1031, 1062 |
| TaaI | ACNGT | 2 cut(s) | 394, 1045 |
| TaiI | ACGT | 1 cut(s) | 975 |
| TaqI | TCGA | 5 cut(s) | 92, 369, 543, 769, 872 |
| TasI | AATT | 7 cut(s) | 266, 363, 677, 771, 868, 907, 1156 |
| TauI | GCSGC | 3 cut(s) | 26, 170, 204 |
| TfiI | GAWTC | 4 cut(s) | 351, 485, 792, 902 |
| Tru1I | TTAA | 3 cut(s) | 663, 671, 714 |
| Tru9I | TTAA | 3 cut(s) | 663, 671, 714 |
| TseFI | GTSAC | 1 cut(s) | 566 |
| TseI | GCWGC | 9 cut(s) | 61, 64, 86, 101, 133, 136, 213, 428, 1103 |
| Tsp45I | GTSAC | 1 cut(s) | 566 |
| TspDTI | ATGAA | 5 cut(s) | 308, 521, 525, 794, 839 |
| TspGWI | ACGGA | 4 cut(s) | 554, 727, 868, 1006 |
| VpaK11BI | GGWCC | 1 cut(s) | 979 |
| XapI | RAATTY | 2 cut(s) | 677, 1156 |
| XbaI | TCTAGA | 1 cut(s) | 898 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1034, 1082 |
| XhoI | CTCGAG | 1 cut(s) | 368 |
| XmaJI | CCTAGG | 1 cut(s) | 1031 |
| XmnI | GAANNNNTTC | 1 cut(s) | 654 |
| XspI | CTAG | 5 cut(s) | 161, 375, 587, 899, 1032 |