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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 464 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 409 |
| AciI | CCGC | 4 cut(s) | 79, 326, 387, 480 |
| AcsI | RAATTY | 1 cut(s) | 532 |
| AcyI | GRCGYC | 2 cut(s) | 435, 447 |
| AdeI | CACNNNGTG | 1 cut(s) | 136 |
| AfaI | GTAC | 1 cut(s) | 514 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 409, 413 |
| AgsI | TTSAA | 1 cut(s) | 500 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AluBI | AGCT | 5 cut(s) | 155, 161, 170, 280, 373 |
| AluI | AGCT | 5 cut(s) | 155, 161, 170, 280, 373 |
| Alw26I | GTCTC | 1 cut(s) | 292 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| AoxI | GGCC | 1 cut(s) | 93 |
| ApeKI | GCWGC | 3 cut(s) | 179, 370, 373 |
| ApoI | RAATTY | 1 cut(s) | 532 |
| AspA2I | CCTAGG | 1 cut(s) | 469 |
| AsuC2I | CCSGG | 1 cut(s) | 107 |
| AsuHPI | GGTGA | 3 cut(s) | 470, 478, 485 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| AvrII | CCTAGG | 1 cut(s) | 469 |
| BaeGI | GKGCMC | 2 cut(s) | 469, 525 |
| BanI | GGYRCC | 1 cut(s) | 464 |
| BauI | CACGAG | 1 cut(s) | 518 |
| BbsI | GAAGAC | 1 cut(s) | 273 |
| BbvI | GCAGC | 3 cut(s) | 191, 360, 382 |
| BccI | CCATC | 5 cut(s) | 92, 215, 342, 437, 455 |
| BciVI | GTATCC | 1 cut(s) | 103 |
| BcnI | CCSGG | 1 cut(s) | 107 |
| BcoDI | GTCTC | 1 cut(s) | 292 |
| BfaI | CTAG | 4 cut(s) | 126, 338, 378, 470 |
| BfuI | GTATCC | 1 cut(s) | 103 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 4 cut(s) | 180, 371, 374, 480 |
| BlnI | CCTAGG | 1 cut(s) | 469 |
| BlsI | GCNGC | 4 cut(s) | 181, 372, 375, 481 |
| Bme1390I | CCNGG | 1 cut(s) | 107 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmiI | GGNNCC | 2 cut(s) | 385, 466 |
| BmrFI | CCNGG | 1 cut(s) | 107 |
| BmsI | GCATC | 1 cut(s) | 466 |
| BpiI | GAAGAC | 1 cut(s) | 273 |
| BpuEI | CTTGAG | 2 cut(s) | 74, 141 |
| BpuMI | CCSGG | 1 cut(s) | 107 |
| BsaHI | GRCGYC | 2 cut(s) | 435, 447 |
| BsaI | GGTCTC | 1 cut(s) | 292 |
| BsaJI | CCNNGG | 2 cut(s) | 438, 469 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 409, 413 |
| BseDI | CCNNGG | 2 cut(s) | 438, 469 |
| BseGI | GGATG | 3 cut(s) | 210, 238, 448 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 409, 413 |
| BseSI | GKGCMC | 2 cut(s) | 469, 525 |
| BseXI | GCAGC | 3 cut(s) | 191, 360, 382 |
| BshFI | GGCC | 1 cut(s) | 95 |
| BshNI | GGYRCC | 1 cut(s) | 464 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BsiSI | CCGG | 1 cut(s) | 107 |
| BsiWI | CGTACG | 1 cut(s) | 512 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 409, 413 |
| BsmAI | GTCTC | 1 cut(s) | 292 |
| BsnI | GGCC | 1 cut(s) | 95 |
| Bso31I | GGTCTC | 1 cut(s) | 292 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| Bsp1286I | GDGCHC | 2 cut(s) | 469, 525 |
| Bsp19I | CCATGG | 1 cut(s) | 438 |
| BspACI | CCGC | 4 cut(s) | 79, 326, 387, 480 |
| BspANI | GGCC | 1 cut(s) | 95 |
| BspLI | GGNNCC | 2 cut(s) | 385, 466 |
| BspT107I | GGYRCC | 1 cut(s) | 464 |
| BspTNI | GGTCTC | 1 cut(s) | 292 |
| BssECI | CCNNGG | 2 cut(s) | 438, 469 |
| BssNI | GRCGYC | 2 cut(s) | 435, 447 |
| BssSI | CACGAG | 1 cut(s) | 518 |
| BssT1I | CCWWGG | 2 cut(s) | 438, 469 |
| Bst2BI | CACGAG | 1 cut(s) | 518 |
| Bst4CI | ACNGT | 2 cut(s) | 145, 421 |
| BstACI | GRCGYC | 2 cut(s) | 435, 447 |
| BstC8I | GCNNGC | 2 cut(s) | 153, 415 |
| BstDEI | CTNAG | 1 cut(s) | 184 |
| BstDSI | CCRYGG | 1 cut(s) | 438 |
| BstF5I | GGATG | 3 cut(s) | 210, 238, 448 |
| BstMAI | GTCTC | 1 cut(s) | 292 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 167, 176, 188, 197 |
| BstSCI | CCNGG | 1 cut(s) | 105 |
| BstSLI | GKGCMC | 2 cut(s) | 469, 525 |
| BstV1I | GCAGC | 3 cut(s) | 191, 360, 382 |
| BstV2I | GAAGAC | 1 cut(s) | 273 |
| BsuI | GTATCC | 1 cut(s) | 103 |
| BsuRI | GGCC | 1 cut(s) | 95 |
| BtgI | CCRYGG | 1 cut(s) | 438 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 3 cut(s) | 210, 238, 448 |
| Cac8I | GCNNGC | 2 cut(s) | 153, 415 |
| CseI | GACGC | 2 cut(s) | 436, 443 |
| Csp6I | GTAC | 1 cut(s) | 513 |
| CviAII | CATG | 1 cut(s) | 439 |
| CviQI | GTAC | 1 cut(s) | 513 |
| DdeI | CTNAG | 1 cut(s) | 184 |
| DraIII | CACNNNGTG | 1 cut(s) | 136 |
| EciI | GGCGGA | 2 cut(s) | 68, 376 |
| Eco130I | CCWWGG | 2 cut(s) | 438, 469 |
| Eco31I | GGTCTC | 1 cut(s) | 292 |
| Eco32I | GATATC | 1 cut(s) | 56 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| EcoRV | GATATC | 1 cut(s) | 56 |
| EcoT14I | CCWWGG | 2 cut(s) | 438, 469 |
| ErhI | CCWWGG | 2 cut(s) | 438, 469 |
| FaeI | CATG | 1 cut(s) | 442 |
| FaiI | YATR | 8 cut(s) | 228, 230, 257, 354, 410, 432, 440, 456 |
| FatI | CATG | 1 cut(s) | 438 |
| FauI | CCCGC | 1 cut(s) | 333 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| Fnu4HI | GCNGC | 4 cut(s) | 180, 371, 374, 480 |
| FokI | GGATG | 3 cut(s) | 197, 245, 455 |
| Fsp4HI | GCNGC | 4 cut(s) | 180, 371, 374, 480 |
| FspBI | CTAG | 4 cut(s) | 126, 338, 378, 470 |
| GluI | GCNGC | 4 cut(s) | 180, 371, 374, 480 |
| HaeIII | GGCC | 1 cut(s) | 95 |
| HapII | CCGG | 1 cut(s) | 107 |
| HgaI | GACGC | 2 cut(s) | 436, 443 |
| Hin1I | GRCGYC | 2 cut(s) | 435, 447 |
| Hin1II | CATG | 1 cut(s) | 442 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 4 cut(s) | 102, 115, 220, 236 |
| HpaII | CCGG | 1 cut(s) | 107 |
| HphI | GGTGA | 3 cut(s) | 470, 478, 485 |
| Hpy166II | GTNNAC | 1 cut(s) | 397 |
| Hpy188I | TCNGA | 1 cut(s) | 53 |
| Hpy188III | TCNNGA | 2 cut(s) | 119, 332 |
| Hpy8I | GTNNAC | 1 cut(s) | 397 |
| Hpy99I | CGWCG | 1 cut(s) | 137 |
| HpyCH4III | ACNGT | 2 cut(s) | 145, 421 |
| HpyCH4IV | ACGT | 2 cut(s) | 135, 312 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 167, 176, 188, 197 |
| HpyF3I | CTNAG | 1 cut(s) | 184 |
| HpySE526I | ACGT | 2 cut(s) | 135, 312 |
| Hsp92I | GRCGYC | 2 cut(s) | 435, 447 |
| Hsp92II | CATG | 1 cut(s) | 442 |
| LmnI | GCTCC | 2 cut(s) | 246, 389 |
| LpnPI | CCDG | 3 cut(s) | 120, 399, 416 |
| Lsp1109I | GCAGC | 3 cut(s) | 191, 360, 382 |
| LweI | GCATC | 1 cut(s) | 466 |
| MaeI | CTAG | 4 cut(s) | 126, 338, 378, 470 |
| MaeII | ACGT | 2 cut(s) | 135, 312 |
| MaeIII | GTNAC | 3 cut(s) | 5, 317, 543 |
| MboII | GAAGA | 2 cut(s) | 275, 278 |
| MhlI | GDGCHC | 2 cut(s) | 469, 525 |
| MluCI | AATT | 3 cut(s) | 17, 490, 532 |
| MlyI | GAGTC | 1 cut(s) | 214 |
| MnlI | CCTC | 3 cut(s) | 181, 400, 567 |
| MslI | CAYNNNNRTG | 3 cut(s) | 215, 231, 456 |
| MspA1I | CMGCKG | 1 cut(s) | 373 |
| MspI | CCGG | 1 cut(s) | 107 |
| MspR9I | CCNGG | 1 cut(s) | 107 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 167, 176, 188, 197 |
| NciI | CCSGG | 1 cut(s) | 107 |
| NcoI | CCATGG | 1 cut(s) | 438 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NlaIII | CATG | 1 cut(s) | 442 |
| NlaIV | GGNNCC | 2 cut(s) | 385, 466 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 141 |
| PfeI | GAWTC | 3 cut(s) | 102, 115, 236 |
| Pfl23II | CGTACG | 1 cut(s) | 512 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 409 |
| PfoI | TCCNGGA | 1 cut(s) | 105 |
| PkrI | GCNGC | 4 cut(s) | 181, 372, 375, 481 |
| PleI | GAGTC | 1 cut(s) | 214 |
| PpsI | GAGTC | 1 cut(s) | 214 |
| PspLI | CGTACG | 1 cut(s) | 512 |
| PspN4I | GGNNCC | 2 cut(s) | 385, 466 |
| PvuII | CAGCTG | 1 cut(s) | 373 |
| RsaI | GTAC | 1 cut(s) | 514 |
| RsaNI | GTAC | 1 cut(s) | 513 |
| RseI | CAYNNNNRTG | 3 cut(s) | 215, 231, 456 |
| SatI | GCNGC | 4 cut(s) | 180, 371, 374, 480 |
| SchI | GAGTC | 1 cut(s) | 214 |
| ScrFI | CCNGG | 1 cut(s) | 107 |
| SduI | GDGCHC | 2 cut(s) | 469, 525 |
| SetI | ASST | 9 cut(s) | 138, 157, 163, 172, 282, 315, 339, 375, 475 |
| SfaNI | GCATC | 1 cut(s) | 466 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 215, 231, 456 |
| SmlI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| SmoI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| Sse9I | AATT | 3 cut(s) | 17, 490, 532 |
| SsiI | CCGC | 4 cut(s) | 79, 326, 387, 480 |
| SspMI | CTAG | 4 cut(s) | 126, 338, 378, 470 |
| StyD4I | CCNGG | 1 cut(s) | 105 |
| StyI | CCWWGG | 2 cut(s) | 438, 469 |
| TaaI | ACNGT | 2 cut(s) | 145, 421 |
| TaiI | ACGT | 2 cut(s) | 138, 315 |
| TaqI | TCGA | 1 cut(s) | 120 |
| TasI | AATT | 3 cut(s) | 17, 490, 532 |
| TauI | GCSGC | 1 cut(s) | 482 |
| TfiI | GAWTC | 3 cut(s) | 102, 115, 236 |
| TseI | GCWGC | 3 cut(s) | 179, 370, 373 |
| TspDTI | ATGAA | 3 cut(s) | 272, 276, 572 |
| TspGWI | ACGGA | 2 cut(s) | 305, 382 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 409 |
| XapI | RAATTY | 1 cut(s) | 532 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 410, 458 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XmaJI | CCTAGG | 1 cut(s) | 469 |
| XspI | CTAG | 4 cut(s) | 126, 338, 378, 470 |