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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 252, 297 |
| Acc65I | GGTACC | 1 cut(s) | 327 |
| AccB1I | GGYRCC | 2 cut(s) | 327, 482 |
| AccBSI | CCGCTC | 1 cut(s) | 325 |
| AciI | CCGC | 4 cut(s) | 325, 364, 385, 509 |
| AclWI | GGATC | 1 cut(s) | 574 |
| AcvI | CACGTG | 2 cut(s) | 407, 425 |
| AcyI | GRCGYC | 1 cut(s) | 7 |
| AdeI | CACNNNGTG | 1 cut(s) | 410 |
| AfaI | GTAC | 2 cut(s) | 329, 659 |
| AfeI | AGCGCT | 1 cut(s) | 86 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 210, 311, 312, 373, 426, 455, 499 |
| AflIII | ACRYGT | 2 cut(s) | 404, 422 |
| AgsI | TTSAA | 5 cut(s) | 124, 131, 160, 258, 586 |
| AjnI | CCWGG | 2 cut(s) | 372, 496 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 72, 104 |
| AluBI | AGCT | 3 cut(s) | 64, 188, 614 |
| AluI | AGCT | 3 cut(s) | 64, 188, 614 |
| Alw21I | GWGCWC | 1 cut(s) | 520 |
| Alw26I | GTCTC | 1 cut(s) | 215 |
| Alw44I | GTGCAC | 1 cut(s) | 516 |
| AlwI | GGATC | 1 cut(s) | 574 |
| Aor51HI | AGCGCT | 1 cut(s) | 86 |
| AoxI | GGCC | 1 cut(s) | 260 |
| ApaLI | GTGCAC | 1 cut(s) | 516 |
| ApeKI | GCWGC | 1 cut(s) | 614 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 189 |
| Asp718I | GGTACC | 1 cut(s) | 327 |
| AspLEI | GCGC | 2 cut(s) | 87, 318 |
| AspS9I | GGNCC | 2 cut(s) | 261, 637 |
| AsuHPI | GGTGA | 1 cut(s) | 688 |
| AvaII | GGWCC | 1 cut(s) | 637 |
| AxyI | CCTNAGG | 1 cut(s) | 641 |
| BaeGI | GKGCMC | 2 cut(s) | 356, 520 |
| BanI | GGYRCC | 2 cut(s) | 327, 482 |
| BauI | CACGAG | 1 cut(s) | 239 |
| BbrPI | CACGTG | 2 cut(s) | 407, 425 |
| Bbv12I | GWGCWC | 1 cut(s) | 520 |
| BbvI | GCAGC | 1 cut(s) | 601 |
| BceAI | ACGGC | 1 cut(s) | 438 |
| BciT130I | CCWGG | 2 cut(s) | 374, 498 |
| BciVI | GTATCC | 2 cut(s) | 394, 455 |
| BcoDI | GTCTC | 1 cut(s) | 215 |
| BfaI | CTAG | 3 cut(s) | 77, 450, 611 |
| BfoI | RGCGCY | 1 cut(s) | 88 |
| BfuI | GTATCC | 2 cut(s) | 394, 455 |
| BisI | GCNGC | 1 cut(s) | 615 |
| BlsI | GCNGC | 1 cut(s) | 616 |
| Bme1390I | CCNGG | 2 cut(s) | 374, 498 |
| Bme18I | GGWCC | 1 cut(s) | 637 |
| BmgT120I | GGNCC | 2 cut(s) | 261, 637 |
| BmiI | GGNNCC | 4 cut(s) | 329, 466, 484, 638 |
| BmrFI | CCNGG | 2 cut(s) | 374, 498 |
| Bsa29I | ATCGAT | 1 cut(s) | 559 |
| BsaAI | YACGTR | 2 cut(s) | 407, 425 |
| BsaBI | GATNNNNATC | 2 cut(s) | 565, 690 |
| BsaHI | GRCGYC | 1 cut(s) | 7 |
| BsaJI | CCNNGG | 4 cut(s) | 454, 468, 497, 594 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 26, 56, 421, 451, 478, 508 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 210, 311, 312, 373, 426, 455, 499 |
| Bse21I | CCTNAGG | 1 cut(s) | 641 |
| Bse3DI | GCAATG | 1 cut(s) | 100 |
| Bse8I | GATNNNNATC | 2 cut(s) | 565, 690 |
| BseBI | CCWGG | 2 cut(s) | 374, 498 |
| BseCI | ATCGAT | 1 cut(s) | 559 |
| BseDI | CCNNGG | 4 cut(s) | 454, 468, 497, 594 |
| BseGI | GGATG | 1 cut(s) | 350 |
| BseJI | GATNNNNATC | 2 cut(s) | 565, 690 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 210, 311, 312, 373, 426, 455, 499 |
| BseMI | GCAATG | 1 cut(s) | 100 |
| BseMII | CTCAG | 3 cut(s) | 40, 210, 632 |
| BseRI | GAGGAG | 1 cut(s) | 101 |
| BseSI | GKGCMC | 2 cut(s) | 356, 520 |
| BseXI | GCAGC | 1 cut(s) | 601 |
| BshFI | GGCC | 1 cut(s) | 262 |
| BshNI | GGYRCC | 2 cut(s) | 327, 482 |
| BshVI | ATCGAT | 1 cut(s) | 559 |
| BsiHKAI | GWGCWC | 1 cut(s) | 520 |
| BslFI | GGGAC | 1 cut(s) | 650 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 210, 311, 312, 373, 426, 455, 499 |
| BsmAI | GTCTC | 1 cut(s) | 215 |
| BsmFI | GGGAC | 1 cut(s) | 650 |
| BsmI | GAATGC | 1 cut(s) | 58 |
| BsnI | GGCC | 1 cut(s) | 262 |
| Bsp1286I | GDGCHC | 2 cut(s) | 356, 520 |
| Bsp143I | GATC | 2 cut(s) | 45, 566 |
| Bsp19I | CCATGG | 1 cut(s) | 468 |
| BspACI | CCGC | 4 cut(s) | 325, 364, 385, 509 |
| BspANI | GGCC | 1 cut(s) | 262 |
| BspCNI | CTCAG | 3 cut(s) | 39, 211, 633 |
| BspDI | ATCGAT | 1 cut(s) | 559 |
| BspHI | TCATGA | 1 cut(s) | 283 |
| BspLI | GGNNCC | 4 cut(s) | 329, 466, 484, 638 |
| BspPI | GGATC | 1 cut(s) | 574 |
| BspQI | GCTCTTC | 2 cut(s) | 75, 195 |
| BspT107I | GGYRCC | 2 cut(s) | 327, 482 |
| BsrBI | CCGCTC | 1 cut(s) | 325 |
| BsrDI | GCAATG | 1 cut(s) | 100 |
| BssECI | CCNNGG | 4 cut(s) | 454, 468, 497, 594 |
| BssMI | GATC | 2 cut(s) | 45, 566 |
| BssNI | GRCGYC | 1 cut(s) | 7 |
| BssSI | CACGAG | 1 cut(s) | 239 |
| BssT1I | CCWWGG | 2 cut(s) | 468, 594 |
| Bst2BI | CACGAG | 1 cut(s) | 239 |
| Bst2UI | CCWGG | 2 cut(s) | 374, 498 |
| Bst6I | CTCTTC | 2 cut(s) | 75, 195 |
| BstACI | GRCGYC | 1 cut(s) | 7 |
| BstBAI | YACGTR | 2 cut(s) | 407, 425 |
| BstC8I | GCNNGC | 3 cut(s) | 509, 601, 605 |
| BstDEI | CTNAG | 5 cut(s) | 26, 219, 273, 333, 641 |
| BstDSI | CCRYGG | 2 cut(s) | 454, 468 |
| BstF5I | GGATG | 1 cut(s) | 350 |
| BstH2I | RGCGCY | 1 cut(s) | 88 |
| BstHHI | GCGC | 2 cut(s) | 87, 318 |
| BstKTI | GATC | 2 cut(s) | 48, 569 |
| BstMAI | GTCTC | 1 cut(s) | 215 |
| BstMBI | GATC | 2 cut(s) | 45, 566 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 82, 322 |
| BstNI | CCWGG | 2 cut(s) | 374, 498 |
| BstSCI | CCNGG | 2 cut(s) | 372, 496 |
| BstSLI | GKGCMC | 2 cut(s) | 356, 520 |
| BstV1I | GCAGC | 1 cut(s) | 601 |
| Bsu15I | ATCGAT | 1 cut(s) | 559 |
| Bsu36I | CCTNAGG | 1 cut(s) | 641 |
| BsuI | GTATCC | 2 cut(s) | 394, 455 |
| BsuRI | GGCC | 1 cut(s) | 262 |
| BsuTUI | ATCGAT | 1 cut(s) | 559 |
| BtgI | CCRYGG | 2 cut(s) | 454, 468 |
| BtsCI | GGATG | 1 cut(s) | 350 |
| Cac8I | GCNNGC | 3 cut(s) | 509, 601, 605 |
| CciI | TCATGA | 1 cut(s) | 283 |
| CfoI | GCGC | 2 cut(s) | 87, 318 |
| Cfr13I | GGNCC | 2 cut(s) | 261, 637 |
| ClaI | ATCGAT | 1 cut(s) | 559 |
| CseI | GACGC | 1 cut(s) | 15 |
| Csp6I | GTAC | 2 cut(s) | 328, 658 |
| CviAII | CATG | 5 cut(s) | 116, 205, 227, 284, 469 |
| CviJI | RGCY | 6 cut(s) | 64, 188, 262, 453, 467, 614 |
| CviKI_1 | RGCY | 6 cut(s) | 64, 188, 262, 453, 467, 614 |
| CviQI | GTAC | 2 cut(s) | 328, 658 |
| DdeI | CTNAG | 5 cut(s) | 26, 219, 273, 333, 641 |
| DpnI | GATC | 2 cut(s) | 47, 568 |
| DpnII | GATC | 2 cut(s) | 45, 566 |
| DraIII | CACNNNGTG | 1 cut(s) | 410 |
| Eam1104I | CTCTTC | 2 cut(s) | 75, 195 |
| EarI | CTCTTC | 2 cut(s) | 75, 195 |
| Eco130I | CCWWGG | 2 cut(s) | 468, 594 |
| Eco47I | GGWCC | 1 cut(s) | 637 |
| Eco47III | AGCGCT | 1 cut(s) | 86 |
| Eco72I | CACGTG | 2 cut(s) | 407, 425 |
| Eco81I | CCTNAGG | 1 cut(s) | 641 |
| EcoO109I | RGGNCCY | 1 cut(s) | 637 |
| EcoRII | CCWGG | 2 cut(s) | 372, 496 |
| EcoT14I | CCWWGG | 2 cut(s) | 468, 594 |
| ErhI | CCWWGG | 2 cut(s) | 468, 594 |
| FaeI | CATG | 5 cut(s) | 119, 208, 230, 287, 472 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 645, 677 |
| FaqI | GGGAC | 1 cut(s) | 650 |
| FatI | CATG | 5 cut(s) | 115, 204, 226, 283, 468 |
| FauI | CCCGC | 1 cut(s) | 516 |
| FauNDI | CATATG | 1 cut(s) | 12 |
| Fnu4HI | GCNGC | 1 cut(s) | 615 |
| FokI | GGATG | 1 cut(s) | 357 |
| Fsp4HI | GCNGC | 1 cut(s) | 615 |
| FspBI | CTAG | 3 cut(s) | 77, 450, 611 |
| GlaI | GCGC | 2 cut(s) | 86, 317 |
| GluI | GCNGC | 1 cut(s) | 615 |
| HaeII | RGCGCY | 1 cut(s) | 88 |
| HaeIII | GGCC | 1 cut(s) | 262 |
| HgaI | GACGC | 1 cut(s) | 15 |
| HhaI | GCGC | 2 cut(s) | 87, 318 |
| Hin1I | GRCGYC | 1 cut(s) | 7 |
| Hin1II | CATG | 5 cut(s) | 119, 208, 230, 287, 472 |
| Hin6I | GCGC | 2 cut(s) | 85, 316 |
| HinP1I | GCGC | 2 cut(s) | 85, 316 |
| HinfI | GANTC | 2 cut(s) | 104, 553 |
| HphI | GGTGA | 1 cut(s) | 688 |
| Hpy166II | GTNNAC | 2 cut(s) | 518, 658 |
| Hpy188I | TCNGA | 3 cut(s) | 29, 184, 220 |
| Hpy188III | TCNNGA | 3 cut(s) | 49, 241, 284 |
| Hpy8I | GTNNAC | 2 cut(s) | 518, 658 |
| Hpy99I | CGWCG | 1 cut(s) | 9 |
| HpyAV | CCTTC | 2 cut(s) | 118, 371 |
| HpyCH4IV | ACGT | 3 cut(s) | 406, 424, 514 |
| HpyCH4V | TGCA | 6 cut(s) | 56, 145, 302, 518, 617, 665 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 82, 322 |
| HpyF3I | CTNAG | 5 cut(s) | 26, 219, 273, 333, 641 |
| HpySE526I | ACGT | 3 cut(s) | 406, 424, 514 |
| Hsp92I | GRCGYC | 1 cut(s) | 7 |
| Hsp92II | CATG | 5 cut(s) | 119, 208, 230, 287, 472 |
| HspAI | GCGC | 2 cut(s) | 85, 316 |
| KpnI | GGTACC | 1 cut(s) | 331 |
| Kzo9I | GATC | 2 cut(s) | 45, 566 |
| LguI | GCTCTTC | 2 cut(s) | 75, 195 |
| LmnI | GCTCC | 3 cut(s) | 322, 464, 646 |
| LpnPI | CCDG | 7 cut(s) | 359, 386, 483, 510, 610, 619, 653 |
| Lsp1109I | GCAGC | 1 cut(s) | 601 |
| MaeI | CTAG | 3 cut(s) | 77, 450, 611 |
| MaeII | ACGT | 3 cut(s) | 406, 424, 514 |
| MaeIII | GTNAC | 1 cut(s) | 620 |
| MalI | GATC | 2 cut(s) | 47, 568 |
| MbiI | CCGCTC | 1 cut(s) | 325 |
| MboI | GATC | 2 cut(s) | 45, 566 |
| MboII | GAAGA | 5 cut(s) | 92, 182, 680, 683, 686 |
| MfeI | CAATTG | 1 cut(s) | 570 |
| MhlI | GDGCHC | 2 cut(s) | 356, 520 |
| MluCI | AATT | 7 cut(s) | 139, 178, 247, 253, 292, 524, 570 |
| MlyI | GAGTC | 1 cut(s) | 562 |
| MroXI | GAANNNNTTC | 1 cut(s) | 189 |
| MseI | TTAA | 1 cut(s) | 527 |
| MslI | CAYNNNNRTG | 3 cut(s) | 239, 546, 561 |
| MspR9I | CCNGG | 2 cut(s) | 374, 498 |
| MunI | CAATTG | 1 cut(s) | 570 |
| Mva1269I | GAATGC | 1 cut(s) | 58 |
| MvaI | CCWGG | 2 cut(s) | 374, 498 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 82, 322 |
| NcoI | CCATGG | 1 cut(s) | 468 |
| NdeI | CATATG | 1 cut(s) | 12 |
| NdeII | GATC | 2 cut(s) | 45, 566 |
| NlaIII | CATG | 5 cut(s) | 119, 208, 230, 287, 472 |
| NlaIV | GGNNCC | 4 cut(s) | 329, 466, 484, 638 |
| PagI | TCATGA | 1 cut(s) | 283 |
| PciSI | GCTCTTC | 2 cut(s) | 75, 195 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 511 |
| PctI | GAATGC | 1 cut(s) | 58 |
| PdmI | GAANNNNTTC | 1 cut(s) | 189 |
| PfeI | GAWTC | 1 cut(s) | 104 |
| PkrI | GCNGC | 1 cut(s) | 616 |
| PleI | GAGTC | 1 cut(s) | 561 |
| PmaCI | CACGTG | 2 cut(s) | 407, 425 |
| PmlI | CACGTG | 2 cut(s) | 407, 425 |
| PpsI | GAGTC | 1 cut(s) | 561 |
| Ppu21I | YACGTR | 2 cut(s) | 407, 425 |
| PpuMI | RGGWCCY | 1 cut(s) | 637 |
| PsiI | TTATAA | 2 cut(s) | 252, 297 |
| Psp5II | RGGWCCY | 1 cut(s) | 637 |
| Psp6I | CCWGG | 2 cut(s) | 372, 496 |
| PspCI | CACGTG | 2 cut(s) | 407, 425 |
| PspGI | CCWGG | 2 cut(s) | 372, 496 |
| PspN4I | GGNNCC | 4 cut(s) | 329, 466, 484, 638 |
| PspPI | GGNCC | 2 cut(s) | 261, 637 |
| PspPPI | RGGWCCY | 1 cut(s) | 637 |
| RsaI | GTAC | 2 cut(s) | 329, 659 |
| RsaNI | GTAC | 2 cut(s) | 328, 658 |
| RseI | CAYNNNNRTG | 3 cut(s) | 239, 546, 561 |
| SapI | GCTCTTC | 2 cut(s) | 75, 195 |
| SaqAI | TTAA | 1 cut(s) | 527 |
| SatI | GCNGC | 1 cut(s) | 615 |
| Sau3AI | GATC | 2 cut(s) | 45, 566 |
| Sau96I | GGNCC | 2 cut(s) | 261, 637 |
| SchI | GAGTC | 1 cut(s) | 562 |
| ScrFI | CCNGG | 2 cut(s) | 374, 498 |
| SduI | GDGCHC | 2 cut(s) | 356, 520 |
| SinI | GGWCC | 1 cut(s) | 637 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 239, 546, 561 |
| Sse9I | AATT | 7 cut(s) | 139, 178, 247, 253, 292, 524, 570 |
| SsiI | CCGC | 4 cut(s) | 325, 364, 385, 509 |
| SspMI | CTAG | 3 cut(s) | 77, 450, 611 |
| StyD4I | CCNGG | 2 cut(s) | 372, 496 |
| StyI | CCWWGG | 2 cut(s) | 468, 594 |
| TaiI | ACGT | 3 cut(s) | 409, 427, 517 |
| TaqI | TCGA | 2 cut(s) | 44, 559 |
| TasI | AATT | 7 cut(s) | 139, 178, 247, 253, 292, 524, 570 |
| TfiI | GAWTC | 1 cut(s) | 104 |
| Tru1I | TTAA | 1 cut(s) | 527 |
| Tru9I | TTAA | 1 cut(s) | 527 |
| TseI | GCWGC | 1 cut(s) | 614 |
| TspDTI | ATGAA | 1 cut(s) | 272 |
| VneI | GTGCAC | 1 cut(s) | 516 |
| VpaK11BI | GGWCC | 1 cut(s) | 637 |
| XmnI | GAANNNNTTC | 1 cut(s) | 189 |
| XspI | CTAG | 3 cut(s) | 77, 450, 611 |