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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 615 |
| AccB1I | GGYRCC | 1 cut(s) | 929 |
| AccI | GTMKAC | 1 cut(s) | 763 |
| AccII | CGCG | 1 cut(s) | 72 |
| AciI | CCGC | 3 cut(s) | 79, 313, 852 |
| AclWI | GGATC | 2 cut(s) | 215, 503 |
| AcsI | RAATTY | 2 cut(s) | 380, 656 |
| AcuI | CTGAAG | 1 cut(s) | 581 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 878 |
| AflII | CTTAAG | 1 cut(s) | 626 |
| AflIII | ACRYGT | 1 cut(s) | 135 |
| AgsI | TTSAA | 3 cut(s) | 328, 966, 978 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjnI | CCWGG | 2 cut(s) | 129, 934 |
| AluBI | AGCT | 5 cut(s) | 48, 155, 161, 514, 524 |
| AluI | AGCT | 5 cut(s) | 48, 155, 161, 514, 524 |
| Alw21I | GWGCWC | 1 cut(s) | 516 |
| Alw26I | GTCTC | 2 cut(s) | 244, 571 |
| AlwI | GGATC | 2 cut(s) | 215, 503 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| AoxI | GGCC | 1 cut(s) | 93 |
| ApeKI | GCWGC | 1 cut(s) | 854 |
| ApoI | RAATTY | 2 cut(s) | 380, 656 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 357, 597 |
| AspA2I | CCTAGG | 1 cut(s) | 872 |
| AspS9I | GGNCC | 1 cut(s) | 683 |
| AsuHPI | GGTGA | 2 cut(s) | 935, 950 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| AvaII | GGWCC | 1 cut(s) | 683 |
| AvrII | CCTAGG | 1 cut(s) | 872 |
| BaeGI | GKGCMC | 1 cut(s) | 625 |
| BanI | GGYRCC | 1 cut(s) | 929 |
| BanII | GRGCYC | 1 cut(s) | 516 |
| Bbv12I | GWGCWC | 1 cut(s) | 516 |
| BbvI | GCAGC | 1 cut(s) | 841 |
| BccI | CCATC | 7 cut(s) | 92, 294, 448, 477, 866, 902, 920 |
| BciT130I | CCWGG | 2 cut(s) | 131, 936 |
| BciVI | GTATCC | 1 cut(s) | 103 |
| BcoDI | GTCTC | 2 cut(s) | 244, 571 |
| BfaI | CTAG | 4 cut(s) | 45, 290, 741, 873 |
| BfmI | CTRYAG | 2 cut(s) | 486, 767 |
| BfrI | CTTAAG | 1 cut(s) | 626 |
| BfuI | GTATCC | 1 cut(s) | 103 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 2 cut(s) | 852, 855 |
| BlnI | CCTAGG | 1 cut(s) | 872 |
| BlsI | GCNGC | 2 cut(s) | 853, 856 |
| Bme1390I | CCNGG | 2 cut(s) | 131, 936 |
| Bme18I | GGWCC | 1 cut(s) | 683 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmgT120I | GGNCC | 1 cut(s) | 683 |
| BmiI | GGNNCC | 1 cut(s) | 931 |
| BmrFI | CCNGG | 2 cut(s) | 131, 936 |
| BmsI | GCATC | 3 cut(s) | 94, 626, 931 |
| BpuEI | CTTGAG | 2 cut(s) | 74, 141 |
| Bsa29I | ATCGAT | 1 cut(s) | 477 |
| BsaI | GGTCTC | 2 cut(s) | 244, 571 |
| BsaJI | CCNNGG | 4 cut(s) | 183, 872, 903, 934 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 878 |
| BseBI | CCWGG | 2 cut(s) | 131, 936 |
| BseCI | ATCGAT | 1 cut(s) | 477 |
| BseDI | CCNNGG | 4 cut(s) | 183, 872, 903, 934 |
| BseGI | GGATG | 4 cut(s) | 641, 784, 858, 913 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 878 |
| BseMII | CTCAG | 1 cut(s) | 363 |
| BseSI | GKGCMC | 1 cut(s) | 625 |
| BseXI | GCAGC | 1 cut(s) | 841 |
| BsgI | GTGCAG | 1 cut(s) | 657 |
| Bsh1236I | CGCG | 1 cut(s) | 72 |
| BshFI | GGCC | 1 cut(s) | 95 |
| BshNI | GGYRCC | 1 cut(s) | 929 |
| BshVI | ATCGAT | 1 cut(s) | 477 |
| BsiHKAI | GWGCWC | 1 cut(s) | 516 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BslFI | GGGAC | 2 cut(s) | 677, 872 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 878 |
| BsmAI | GTCTC | 2 cut(s) | 244, 571 |
| BsmFI | GGGAC | 2 cut(s) | 677, 872 |
| BsnI | GGCC | 1 cut(s) | 95 |
| Bso31I | GGTCTC | 2 cut(s) | 244, 571 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| Bsp1286I | GDGCHC | 2 cut(s) | 516, 625 |
| Bsp143I | GATC | 2 cut(s) | 220, 495 |
| Bsp19I | CCATGG | 1 cut(s) | 903 |
| Bsp68I | TCGCGA | 1 cut(s) | 72 |
| BspACI | CCGC | 3 cut(s) | 79, 313, 852 |
| BspANI | GGCC | 1 cut(s) | 95 |
| BspCNI | CTCAG | 1 cut(s) | 362 |
| BspDI | ATCGAT | 1 cut(s) | 477 |
| BspFNI | CGCG | 1 cut(s) | 72 |
| BspHI | TCATGA | 2 cut(s) | 508, 745 |
| BspLI | GGNNCC | 1 cut(s) | 931 |
| BspPI | GGATC | 2 cut(s) | 215, 503 |
| BspT107I | GGYRCC | 1 cut(s) | 929 |
| BspTI | CTTAAG | 1 cut(s) | 626 |
| BspTNI | GGTCTC | 2 cut(s) | 244, 571 |
| BssECI | CCNNGG | 4 cut(s) | 183, 872, 903, 934 |
| BssMI | GATC | 2 cut(s) | 220, 495 |
| BssT1I | CCWWGG | 3 cut(s) | 183, 872, 903 |
| Bst2UI | CCWGG | 2 cut(s) | 131, 936 |
| Bst4CI | ACNGT | 3 cut(s) | 145, 490, 847 |
| BstAFI | CTTAAG | 1 cut(s) | 626 |
| BstC8I | GCNNGC | 3 cut(s) | 83, 153, 880 |
| BstDEI | CTNAG | 4 cut(s) | 349, 830, 836, 984 |
| BstDSI | CCRYGG | 1 cut(s) | 903 |
| BstF5I | GGATG | 4 cut(s) | 641, 784, 858, 913 |
| BstFNI | CGCG | 1 cut(s) | 72 |
| BstKTI | GATC | 2 cut(s) | 223, 498 |
| BstMAI | GTCTC | 2 cut(s) | 244, 571 |
| BstMBI | GATC | 2 cut(s) | 220, 495 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 78, 188 |
| BstNI | CCWGG | 2 cut(s) | 131, 936 |
| BstSCI | CCNGG | 2 cut(s) | 129, 934 |
| BstSFI | CTRYAG | 2 cut(s) | 486, 767 |
| BstSLI | GKGCMC | 1 cut(s) | 625 |
| BstUI | CGCG | 1 cut(s) | 72 |
| BstV1I | GCAGC | 1 cut(s) | 841 |
| BstX2I | RGATCY | 1 cut(s) | 220 |
| BstYI | RGATCY | 1 cut(s) | 220 |
| Bsu15I | ATCGAT | 1 cut(s) | 477 |
| BsuI | GTATCC | 1 cut(s) | 103 |
| BsuRI | GGCC | 1 cut(s) | 95 |
| BsuTUI | ATCGAT | 1 cut(s) | 477 |
| BtgI | CCRYGG | 1 cut(s) | 903 |
| BtgZI | GCGATG | 1 cut(s) | 87 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 4 cut(s) | 641, 784, 858, 913 |
| BtuMI | TCGCGA | 1 cut(s) | 72 |
| Cac8I | GCNNGC | 3 cut(s) | 83, 153, 880 |
| CciI | TCATGA | 2 cut(s) | 508, 745 |
| Cfr13I | GGNCC | 1 cut(s) | 683 |
| ClaI | ATCGAT | 1 cut(s) | 477 |
| CviAII | CATG | 9 cut(s) | 269, 509, 545, 727, 746, 779, 896, 904, 920 |
| DdeI | CTNAG | 4 cut(s) | 349, 830, 836, 984 |
| DpnI | GATC | 2 cut(s) | 222, 497 |
| DpnII | GATC | 2 cut(s) | 220, 495 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Ecl136II | GAGCTC | 1 cut(s) | 514 |
| Eco130I | CCWWGG | 3 cut(s) | 183, 872, 903 |
| Eco24I | GRGCYC | 1 cut(s) | 516 |
| Eco31I | GGTCTC | 2 cut(s) | 244, 571 |
| Eco32I | GATATC | 1 cut(s) | 56 |
| Eco47I | GGWCC | 1 cut(s) | 683 |
| Eco53kI | GAGCTC | 1 cut(s) | 514 |
| Eco57I | CTGAAG | 1 cut(s) | 581 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| EcoICRI | GAGCTC | 1 cut(s) | 514 |
| EcoRI | GAATTC | 1 cut(s) | 380 |
| EcoRII | CCWGG | 2 cut(s) | 129, 934 |
| EcoRV | GATATC | 1 cut(s) | 56 |
| EcoT14I | CCWWGG | 3 cut(s) | 183, 872, 903 |
| EcoT38I | GRGCYC | 1 cut(s) | 516 |
| ErhI | CCWWGG | 3 cut(s) | 183, 872, 903 |
| FaeI | CATG | 9 cut(s) | 272, 512, 548, 730, 749, 782, 899, 907, 923 |
| FaqI | GGGAC | 2 cut(s) | 677, 872 |
| FatI | CATG | 9 cut(s) | 268, 508, 544, 726, 745, 778, 895, 903, 919 |
| FblI | GTMKAC | 1 cut(s) | 763 |
| Fnu4HI | GCNGC | 2 cut(s) | 852, 855 |
| FokI | GGATG | 4 cut(s) | 648, 771, 845, 920 |
| FriOI | GRGCYC | 1 cut(s) | 516 |
| Fsp4HI | GCNGC | 2 cut(s) | 852, 855 |
| FspBI | CTAG | 4 cut(s) | 45, 290, 741, 873 |
| GluI | GCNGC | 2 cut(s) | 852, 855 |
| HaeIII | GGCC | 1 cut(s) | 95 |
| Hin1II | CATG | 9 cut(s) | 272, 512, 548, 730, 749, 782, 899, 907, 923 |
| HincII | GTYRAC | 1 cut(s) | 141 |
| HindII | GTYRAC | 1 cut(s) | 141 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 8 cut(s) | 67, 102, 272, 424, 474, 605, 814, 826 |
| HpaI | GTTAAC | 1 cut(s) | 141 |
| HphI | GGTGA | 2 cut(s) | 935, 950 |
| Hpy166II | GTNNAC | 2 cut(s) | 141, 764 |
| Hpy188I | TCNGA | 3 cut(s) | 352, 448, 561 |
| Hpy188III | TCNNGA | 6 cut(s) | 71, 119, 284, 509, 602, 746 |
| Hpy8I | GTNNAC | 2 cut(s) | 141, 764 |
| HpyAV | CCTTC | 3 cut(s) | 445, 451, 926 |
| HpyCH4III | ACNGT | 3 cut(s) | 145, 490, 847 |
| HpyCH4IV | ACGT | 2 cut(s) | 135, 264 |
| HpyCH4V | TGCA | 2 cut(s) | 461, 674 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 78, 188 |
| HpyF3I | CTNAG | 4 cut(s) | 349, 830, 836, 984 |
| HpySE526I | ACGT | 2 cut(s) | 135, 264 |
| Hsp92II | CATG | 9 cut(s) | 272, 512, 548, 730, 749, 782, 899, 907, 923 |
| KspAI | GTTAAC | 1 cut(s) | 141 |
| Kzo9I | GATC | 2 cut(s) | 220, 495 |
| LmnI | GCTCC | 2 cut(s) | 34, 521 |
| Lsp1109I | GCAGC | 1 cut(s) | 841 |
| LweI | GCATC | 3 cut(s) | 94, 626, 931 |
| MaeI | CTAG | 4 cut(s) | 45, 290, 741, 873 |
| MaeII | ACGT | 2 cut(s) | 135, 264 |
| MaeIII | GTNAC | 3 cut(s) | 5, 481, 532 |
| MalI | GATC | 2 cut(s) | 222, 497 |
| MboI | GATC | 2 cut(s) | 220, 495 |
| MboII | GAAGA | 5 cut(s) | 179, 227, 230, 548, 574 |
| MflI | RGATCY | 1 cut(s) | 220 |
| MhlI | GDGCHC | 2 cut(s) | 516, 625 |
| MluCI | AATT | 6 cut(s) | 380, 571, 610, 656, 667, 948 |
| MlyI | GAGTC | 3 cut(s) | 266, 418, 614 |
| MmeI | TCCRAC | 1 cut(s) | 499 |
| MnlI | CCTC | 4 cut(s) | 181, 320, 414, 626 |
| MroXI | GAANNNNTTC | 2 cut(s) | 357, 597 |
| MseI | TTAA | 4 cut(s) | 140, 366, 374, 627 |
| MslI | CAYNNNNRTG | 2 cut(s) | 404, 924 |
| MspA1I | CMGCKG | 1 cut(s) | 854 |
| MspCI | CTTAAG | 1 cut(s) | 626 |
| MspR9I | CCNGG | 2 cut(s) | 131, 936 |
| MvaI | CCWGG | 2 cut(s) | 131, 936 |
| MvnI | CGCG | 1 cut(s) | 72 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 78, 188 |
| NcoI | CCATGG | 1 cut(s) | 903 |
| NdeII | GATC | 2 cut(s) | 220, 495 |
| NlaIII | CATG | 9 cut(s) | 272, 512, 548, 730, 749, 782, 899, 907, 923 |
| NlaIV | GGNNCC | 1 cut(s) | 931 |
| NmuCI | GTSAC | 1 cut(s) | 532 |
| NruI | TCGCGA | 1 cut(s) | 72 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PagI | TCATGA | 2 cut(s) | 508, 745 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 802 |
| PdmI | GAANNNNTTC | 2 cut(s) | 357, 597 |
| PfeI | GAWTC | 5 cut(s) | 67, 102, 474, 814, 826 |
| PfoI | TCCNGGA | 1 cut(s) | 129 |
| PkrI | GCNGC | 2 cut(s) | 853, 856 |
| PleI | GAGTC | 3 cut(s) | 266, 418, 613 |
| PpsI | GAGTC | 3 cut(s) | 266, 418, 613 |
| PsiI | TTATAA | 1 cut(s) | 615 |
| Psp124BI | GAGCTC | 1 cut(s) | 516 |
| Psp6I | CCWGG | 2 cut(s) | 129, 934 |
| PspGI | CCWGG | 2 cut(s) | 129, 934 |
| PspN4I | GGNNCC | 1 cut(s) | 931 |
| PspPI | GGNCC | 1 cut(s) | 683 |
| PsuI | RGATCY | 1 cut(s) | 220 |
| RruI | TCGCGA | 1 cut(s) | 72 |
| RseI | CAYNNNNRTG | 2 cut(s) | 404, 924 |
| SacI | GAGCTC | 1 cut(s) | 516 |
| SaqAI | TTAA | 4 cut(s) | 140, 366, 374, 627 |
| SatI | GCNGC | 2 cut(s) | 852, 855 |
| Sau3AI | GATC | 2 cut(s) | 220, 495 |
| Sau96I | GGNCC | 1 cut(s) | 683 |
| SchI | GAGTC | 3 cut(s) | 266, 418, 614 |
| ScrFI | CCNGG | 2 cut(s) | 131, 936 |
| SduI | GDGCHC | 2 cut(s) | 516, 625 |
| SfaNI | GCATC | 3 cut(s) | 94, 626, 931 |
| SfcI | CTRYAG | 2 cut(s) | 486, 767 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SinI | GGWCC | 1 cut(s) | 683 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 404, 924 |
| SmlI | CTYRAG | 4 cut(s) | 89, 119, 156, 626 |
| SmoI | CTYRAG | 4 cut(s) | 89, 119, 156, 626 |
| Sse9I | AATT | 6 cut(s) | 380, 571, 610, 656, 667, 948 |
| SsiI | CCGC | 3 cut(s) | 79, 313, 852 |
| SspMI | CTAG | 4 cut(s) | 45, 290, 741, 873 |
| SstI | GAGCTC | 1 cut(s) | 516 |
| StyD4I | CCNGG | 2 cut(s) | 129, 934 |
| StyI | CCWWGG | 3 cut(s) | 183, 872, 903 |
| TaaI | ACNGT | 3 cut(s) | 145, 490, 847 |
| TaiI | ACGT | 2 cut(s) | 138, 267 |
| TaqI | TCGA | 4 cut(s) | 120, 472, 477, 796 |
| TasI | AATT | 6 cut(s) | 380, 571, 610, 656, 667, 948 |
| TauI | GCSGC | 1 cut(s) | 854 |
| TfiI | GAWTC | 5 cut(s) | 67, 102, 474, 814, 826 |
| Tru1I | TTAA | 4 cut(s) | 140, 366, 374, 627 |
| Tru9I | TTAA | 4 cut(s) | 140, 366, 374, 627 |
| TseFI | GTSAC | 1 cut(s) | 532 |
| TseI | GCWGC | 1 cut(s) | 854 |
| Tsp45I | GTSAC | 1 cut(s) | 532 |
| TspDTI | ATGAA | 6 cut(s) | 216, 224, 497, 542, 717, 908 |
| TspGWI | ACGGA | 1 cut(s) | 749 |
| Vha464I | CTTAAG | 1 cut(s) | 626 |
| VpaK11BI | GGWCC | 1 cut(s) | 683 |
| XapI | RAATTY | 2 cut(s) | 380, 656 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XmaJI | CCTAGG | 1 cut(s) | 872 |
| XmiI | GTMKAC | 1 cut(s) | 763 |
| XmnI | GAANNNNTTC | 2 cut(s) | 357, 597 |
| XspI | CTAG | 4 cut(s) | 45, 290, 741, 873 |