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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 396, 441 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 504 |
| Acc36I | ACCTGC | 1 cut(s) | 531 |
| AccB1I | GGYRCC | 1 cut(s) | 121 |
| AciI | CCGC | 3 cut(s) | 298, 538, 551 |
| AclWI | GGATC | 2 cut(s) | 141, 329 |
| AcuI | CTGAAG | 1 cut(s) | 324 |
| AcvI | CACGTG | 2 cut(s) | 560, 578 |
| AdeI | CACNNNGTG | 1 cut(s) | 563 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 64, 204, 455, 456, 526, 579 |
| AflIII | ACRYGT | 2 cut(s) | 557, 575 |
| AgsI | TTSAA | 4 cut(s) | 96, 145, 402, 413 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 221 |
| AjnI | CCWGG | 2 cut(s) | 117, 601 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 125, 157 |
| AluBI | AGCT | 4 cut(s) | 182, 238, 340, 362 |
| AluI | AGCT | 4 cut(s) | 182, 238, 340, 362 |
| AlwI | GGATC | 2 cut(s) | 141, 329 |
| AoxI | GGCC | 1 cut(s) | 404 |
| AspS9I | GGNCC | 2 cut(s) | 405, 506 |
| AsuC2I | CCSGG | 1 cut(s) | 131 |
| AsuHPI | GGTGA | 2 cut(s) | 445, 575 |
| AvaII | GGWCC | 1 cut(s) | 506 |
| BanI | GGYRCC | 1 cut(s) | 121 |
| BauI | CACGAG | 2 cut(s) | 325, 383 |
| BbrPI | CACGTG | 2 cut(s) | 560, 578 |
| BciT130I | CCWGG | 2 cut(s) | 119, 603 |
| BciVI | GTATCC | 2 cut(s) | 547, 608 |
| BcnI | CCSGG | 1 cut(s) | 131 |
| BfaI | CTAG | 1 cut(s) | 15 |
| BfmI | CTRYAG | 2 cut(s) | 191, 357 |
| BfuAI | ACCTGC | 1 cut(s) | 531 |
| BfuI | GTATCC | 2 cut(s) | 547, 608 |
| Bme1390I | CCNGG | 3 cut(s) | 119, 131, 603 |
| Bme18I | GGWCC | 1 cut(s) | 506 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 221 |
| BmgT120I | GGNCC | 2 cut(s) | 405, 506 |
| BmiI | GGNNCC | 2 cut(s) | 123, 507 |
| BmrFI | CCNGG | 3 cut(s) | 119, 131, 603 |
| BpuMI | CCSGG | 1 cut(s) | 131 |
| BsaAI | YACGTR | 2 cut(s) | 560, 578 |
| BsaJI | CCNNGG | 1 cut(s) | 601 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 574, 604 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 64, 204, 455, 456, 526, 579 |
| BseBI | CCWGG | 2 cut(s) | 119, 603 |
| BseDI | CCNNGG | 1 cut(s) | 601 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 64, 204, 455, 456, 526, 579 |
| BseMII | CTCAG | 2 cut(s) | 63, 354 |
| BshFI | GGCC | 1 cut(s) | 406 |
| BshNI | GGYRCC | 1 cut(s) | 121 |
| BsiSI | CCGG | 1 cut(s) | 131 |
| BslFI | GGGAC | 1 cut(s) | 510 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 64, 204, 455, 456, 526, 579 |
| BsmFI | GGGAC | 1 cut(s) | 510 |
| BsmI | GAATGC | 1 cut(s) | 423 |
| BsnI | GGCC | 1 cut(s) | 406 |
| Bsp143I | GATC | 2 cut(s) | 133, 321 |
| BspACI | CCGC | 3 cut(s) | 298, 538, 551 |
| BspANI | GGCC | 1 cut(s) | 406 |
| BspCNI | CTCAG | 2 cut(s) | 62, 355 |
| BspHI | TCATGA | 1 cut(s) | 427 |
| BspLI | GGNNCC | 2 cut(s) | 123, 507 |
| BspMI | ACCTGC | 1 cut(s) | 531 |
| BspPI | GGATC | 2 cut(s) | 141, 329 |
| BspQI | GCTCTTC | 1 cut(s) | 189 |
| BspT107I | GGYRCC | 1 cut(s) | 121 |
| BssECI | CCNNGG | 1 cut(s) | 601 |
| BssMI | GATC | 2 cut(s) | 133, 321 |
| BssSI | CACGAG | 2 cut(s) | 325, 383 |
| Bst2BI | CACGAG | 2 cut(s) | 325, 383 |
| Bst2UI | CCWGG | 2 cut(s) | 119, 603 |
| Bst4CI | ACNGT | 2 cut(s) | 62, 195 |
| Bst6I | CTCTTC | 1 cut(s) | 189 |
| BstBAI | YACGTR | 2 cut(s) | 560, 578 |
| BstDEI | CTNAG | 3 cut(s) | 49, 363, 477 |
| BstEII | GGTNACC | 1 cut(s) | 67 |
| BstKTI | GATC | 2 cut(s) | 136, 324 |
| BstMBI | GATC | 2 cut(s) | 133, 321 |
| BstNI | CCWGG | 2 cut(s) | 119, 603 |
| BstPI | GGTNACC | 1 cut(s) | 67 |
| BstSCI | CCNGG | 3 cut(s) | 117, 129, 601 |
| BstSFI | CTRYAG | 2 cut(s) | 191, 357 |
| BsuI | GTATCC | 2 cut(s) | 547, 608 |
| BsuRI | GGCC | 1 cut(s) | 406 |
| BtsIMutI | CAGTG | 1 cut(s) | 300 |
| BveI | ACCTGC | 1 cut(s) | 531 |
| CciI | TCATGA | 1 cut(s) | 427 |
| Cfr13I | GGNCC | 2 cut(s) | 405, 506 |
| CviAII | CATG | 5 cut(s) | 31, 199, 371, 428, 615 |
| CviJI | RGCY | 7 cut(s) | 48, 182, 238, 275, 340, 362, 406 |
| CviKI_1 | RGCY | 7 cut(s) | 48, 182, 238, 275, 340, 362, 406 |
| DdeI | CTNAG | 3 cut(s) | 49, 363, 477 |
| DpnI | GATC | 2 cut(s) | 135, 323 |
| DpnII | GATC | 2 cut(s) | 133, 321 |
| DraIII | CACNNNGTG | 1 cut(s) | 563 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 504 |
| DriI | GACNNNNNGTC | 1 cut(s) | 221 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 504 |
| Eam1104I | CTCTTC | 1 cut(s) | 189 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 221 |
| EarI | CTCTTC | 1 cut(s) | 189 |
| Eco47I | GGWCC | 1 cut(s) | 506 |
| Eco57I | CTGAAG | 1 cut(s) | 324 |
| Eco72I | CACGTG | 2 cut(s) | 560, 578 |
| Eco91I | GGTNACC | 1 cut(s) | 67 |
| EcoO65I | GGTNACC | 1 cut(s) | 67 |
| EcoRII | CCWGG | 2 cut(s) | 117, 601 |
| FaeI | CATG | 5 cut(s) | 34, 202, 374, 431, 618 |
| FaqI | GGGAC | 1 cut(s) | 510 |
| FatI | CATG | 5 cut(s) | 30, 198, 370, 427, 614 |
| FspBI | CTAG | 1 cut(s) | 15 |
| HaeIII | GGCC | 1 cut(s) | 406 |
| HapII | CCGG | 1 cut(s) | 131 |
| Hin1II | CATG | 5 cut(s) | 34, 202, 374, 431, 618 |
| HinfI | GANTC | 3 cut(s) | 18, 38, 169 |
| HpaII | CCGG | 1 cut(s) | 131 |
| HphI | GGTGA | 2 cut(s) | 445, 575 |
| Hpy166II | GTNNAC | 1 cut(s) | 215 |
| Hpy188I | TCNGA | 1 cut(s) | 52 |
| Hpy188III | TCNNGA | 3 cut(s) | 325, 385, 428 |
| Hpy8I | GTNNAC | 1 cut(s) | 215 |
| HpyAV | CCTTC | 2 cut(s) | 271, 524 |
| HpyCH4III | ACNGT | 2 cut(s) | 62, 195 |
| HpyCH4IV | ACGT | 3 cut(s) | 499, 559, 577 |
| HpyCH4V | TGCA | 2 cut(s) | 446, 462 |
| HpyF3I | CTNAG | 3 cut(s) | 49, 363, 477 |
| HpySE526I | ACGT | 3 cut(s) | 499, 559, 577 |
| Hsp92II | CATG | 5 cut(s) | 34, 202, 374, 431, 618 |
| Kzo9I | GATC | 2 cut(s) | 133, 321 |
| LguI | GCTCTTC | 1 cut(s) | 189 |
| LmnI | GCTCC | 1 cut(s) | 466 |
| LpnPI | CCDG | 8 cut(s) | 30, 104, 131, 144, 234, 300, 526, 588 |
| MaeI | CTAG | 1 cut(s) | 15 |
| MaeII | ACGT | 3 cut(s) | 499, 559, 577 |
| MaeIII | GTNAC | 3 cut(s) | 67, 223, 563 |
| MalI | GATC | 2 cut(s) | 135, 323 |
| MboI | GATC | 2 cut(s) | 133, 321 |
| MboII | GAAGA | 1 cut(s) | 176 |
| MluCI | AATT | 4 cut(s) | 240, 391, 397, 436 |
| MlyI | GAGTC | 2 cut(s) | 12, 32 |
| MnlI | CCTC | 8 cut(s) | 98, 198, 321, 381, 424, 449, 487, 578 |
| MseI | TTAA | 1 cut(s) | 243 |
| MslI | CAYNNNNRTG | 1 cut(s) | 383 |
| MspI | CCGG | 1 cut(s) | 131 |
| MspR9I | CCNGG | 3 cut(s) | 119, 131, 603 |
| Mva1269I | GAATGC | 1 cut(s) | 423 |
| MvaI | CCWGG | 2 cut(s) | 119, 603 |
| NciI | CCSGG | 1 cut(s) | 131 |
| NdeII | GATC | 2 cut(s) | 133, 321 |
| NlaIII | CATG | 5 cut(s) | 34, 202, 374, 431, 618 |
| NlaIV | GGNNCC | 2 cut(s) | 123, 507 |
| NmuCI | GTSAC | 2 cut(s) | 223, 563 |
| PagI | TCATGA | 1 cut(s) | 427 |
| PciSI | GCTCTTC | 1 cut(s) | 189 |
| PctI | GAATGC | 1 cut(s) | 423 |
| PfeI | GAWTC | 1 cut(s) | 169 |
| PleI | GAGTC | 2 cut(s) | 12, 32 |
| PmaCI | CACGTG | 2 cut(s) | 560, 578 |
| PmlI | CACGTG | 2 cut(s) | 560, 578 |
| PpsI | GAGTC | 2 cut(s) | 12, 32 |
| Ppu21I | YACGTR | 2 cut(s) | 560, 578 |
| PsiI | TTATAA | 2 cut(s) | 396, 441 |
| Psp6I | CCWGG | 2 cut(s) | 117, 601 |
| PspCI | CACGTG | 2 cut(s) | 560, 578 |
| PspEI | GGTNACC | 1 cut(s) | 67 |
| PspGI | CCWGG | 2 cut(s) | 117, 601 |
| PspN4I | GGNNCC | 2 cut(s) | 123, 507 |
| PspPI | GGNCC | 2 cut(s) | 405, 506 |
| RseI | CAYNNNNRTG | 1 cut(s) | 383 |
| SapI | GCTCTTC | 1 cut(s) | 189 |
| SaqAI | TTAA | 1 cut(s) | 243 |
| Sau3AI | GATC | 2 cut(s) | 133, 321 |
| Sau96I | GGNCC | 2 cut(s) | 405, 506 |
| SchI | GAGTC | 2 cut(s) | 12, 32 |
| ScrFI | CCNGG | 3 cut(s) | 119, 131, 603 |
| SfcI | CTRYAG | 2 cut(s) | 191, 357 |
| SinI | GGWCC | 1 cut(s) | 506 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 383 |
| Sse9I | AATT | 4 cut(s) | 240, 391, 397, 436 |
| SsiI | CCGC | 3 cut(s) | 298, 538, 551 |
| SspI | AATATT | 1 cut(s) | 105 |
| SspMI | CTAG | 1 cut(s) | 15 |
| StyD4I | CCNGG | 3 cut(s) | 117, 129, 601 |
| TaaI | ACNGT | 2 cut(s) | 62, 195 |
| TaiI | ACGT | 3 cut(s) | 502, 562, 580 |
| TaqI | TCGA | 1 cut(s) | 21 |
| TasI | AATT | 4 cut(s) | 240, 391, 397, 436 |
| TfiI | GAWTC | 1 cut(s) | 169 |
| Tru1I | TTAA | 1 cut(s) | 243 |
| Tru9I | TTAA | 1 cut(s) | 243 |
| TscAI | CASTG | 1 cut(s) | 307 |
| TseFI | GTSAC | 2 cut(s) | 223, 563 |
| Tsp45I | GTSAC | 2 cut(s) | 223, 563 |
| TspDTI | ATGAA | 4 cut(s) | 24, 162, 323, 416 |
| TspGWI | ACGGA | 1 cut(s) | 334 |
| TspRI | CASTG | 1 cut(s) | 307 |
| VpaK11BI | GGWCC | 1 cut(s) | 506 |
| XspI | CTAG | 1 cut(s) | 15 |