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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 981 |
| AarI | CACCTGC | 3 cut(s) | 397, 430, 442 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 502 |
| Acc16I | TGCGCA | 1 cut(s) | 404 |
| Acc36I | ACCTGC | 6 cut(s) | 340, 363, 385, 397, 430, 442 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1261 |
| AccBSI | CCGCTC | 1 cut(s) | 1091 |
| AccI | GTMKAC | 2 cut(s) | 198, 494 |
| AciI | CCGC | 5 cut(s) | 47, 204, 224, 1078, 1091 |
| AclWI | GGATC | 1 cut(s) | 405 |
| AcoI | YGGCCR | 3 cut(s) | 69, 236, 258 |
| AcsI | RAATTY | 3 cut(s) | 42, 60, 216 |
| AcvI | CACGTG | 4 cut(s) | 1118, 1136, 1151, 1169 |
| AdeI | CACNNNGTG | 2 cut(s) | 1121, 1154 |
| AfaI | GTAC | 1 cut(s) | 1042 |
| AflIII | ACRYGT | 5 cut(s) | 1115, 1133, 1148, 1166, 1222 |
| AgsI | TTSAA | 4 cut(s) | 275, 619, 658, 942 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 694 |
| AjiI | CACGTC | 1 cut(s) | 1223 |
| AjnI | CCWGG | 1 cut(s) | 171 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 9, 41 |
| Alw21I | GWGCWC | 2 cut(s) | 344, 421 |
| Alw26I | GTCTC | 4 cut(s) | 322, 345, 367, 814 |
| AlwI | GGATC | 1 cut(s) | 405 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 411 |
| AoxI | GGCC | 9 cut(s) | 69, 174, 225, 236, 248, 258, 944, 1045, 1198 |
| ApaI | GGGCCC | 1 cut(s) | 1049 |
| ApeKI | GCWGC | 9 cut(s) | 168, 405, 408, 411, 465, 468, 487, 1006, 1273 |
| ApoI | RAATTY | 3 cut(s) | 42, 60, 216 |
| AseI | ATTAAT | 1 cut(s) | 885 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 723 |
| AspA2I | CCTAGG | 1 cut(s) | 1243 |
| AspLEI | GCGC | 2 cut(s) | 405, 1002 |
| AspS9I | GGNCC | 7 cut(s) | 175, 226, 248, 945, 1045, 1046, 1198 |
| AsuC2I | CCSGG | 3 cut(s) | 246, 316, 588 |
| AvrII | CCTAGG | 1 cut(s) | 1243 |
| BaeGI | GKGCMC | 1 cut(s) | 1049 |
| BanII | GRGCYC | 2 cut(s) | 344, 1049 |
| BauI | CACGAG | 1 cut(s) | 1098 |
| BbrPI | CACGTG | 4 cut(s) | 1118, 1136, 1151, 1169 |
| BbsI | GAAGAC | 1 cut(s) | 794 |
| Bbv12I | GWGCWC | 2 cut(s) | 344, 421 |
| BbvI | GCAGC | 8 cut(s) | 180, 398, 417, 420, 455, 477, 499, 1018 |
| BccI | CCATC | 1 cut(s) | 80 |
| BceAI | ACGGC | 2 cut(s) | 217, 1185 |
| BciT130I | CCWGG | 1 cut(s) | 173 |
| BciVI | GTATCC | 2 cut(s) | 631, 1175 |
| BcnI | CCSGG | 3 cut(s) | 246, 316, 588 |
| BcoDI | GTCTC | 4 cut(s) | 322, 345, 367, 814 |
| BfaI | CTAG | 3 cut(s) | 462, 605, 1244 |
| BfmI | CTRYAG | 1 cut(s) | 1271 |
| BfuAI | ACCTGC | 6 cut(s) | 340, 363, 385, 397, 430, 442 |
| BfuI | GTATCC | 2 cut(s) | 631, 1175 |
| BglII | AGATCT | 1 cut(s) | 499 |
| BlnI | CCTAGG | 1 cut(s) | 1243 |
| Bme1390I | CCNGG | 4 cut(s) | 173, 246, 316, 588 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 694 |
| BmgBI | CACGTC | 1 cut(s) | 1223 |
| BmgT120I | GGNCC | 7 cut(s) | 175, 226, 248, 945, 1045, 1046, 1198 |
| BmiI | GGNNCC | 4 cut(s) | 177, 249, 955, 1047 |
| BmrFI | CCNGG | 4 cut(s) | 173, 246, 316, 588 |
| BmsI | GCATC | 5 cut(s) | 328, 373, 451, 462, 1221 |
| BpiI | GAAGAC | 1 cut(s) | 794 |
| BpuMI | CCSGG | 3 cut(s) | 246, 316, 588 |
| BsaAI | YACGTR | 4 cut(s) | 1118, 1136, 1151, 1169 |
| BsaI | GGTCTC | 3 cut(s) | 322, 345, 367 |
| BsaJI | CCNNGG | 4 cut(s) | 245, 393, 1201, 1243 |
| BsaWI | WCCGGW | 1 cut(s) | 263 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 1260 |
| Bse118I | RCCGGY | 1 cut(s) | 256 |
| BseBI | CCWGG | 1 cut(s) | 173 |
| BseDI | CCNNGG | 4 cut(s) | 245, 393, 1201, 1243 |
| BseGI | GGATG | 3 cut(s) | 453, 596, 918 |
| BseMII | CTCAG | 1 cut(s) | 825 |
| BseRI | GAGGAG | 3 cut(s) | 178, 635, 788 |
| BseSI | GKGCMC | 1 cut(s) | 1049 |
| BseXI | GCAGC | 8 cut(s) | 180, 398, 417, 420, 455, 477, 499, 1018 |
| BshFI | GGCC | 9 cut(s) | 71, 176, 227, 238, 250, 260, 946, 1047, 1200 |
| BsiHKAI | GWGCWC | 2 cut(s) | 344, 421 |
| BsiWI | CGTACG | 1 cut(s) | 1040 |
| BslFI | GGGAC | 1 cut(s) | 1041 |
| BsmAI | GTCTC | 4 cut(s) | 322, 345, 367, 814 |
| BsmBI | CGTCTC | 1 cut(s) | 814 |
| BsmFI | GGGAC | 1 cut(s) | 1041 |
| BsnI | GGCC | 9 cut(s) | 71, 176, 227, 238, 250, 260, 946, 1047, 1200 |
| Bso31I | GGTCTC | 3 cut(s) | 322, 345, 367 |
| Bsp120I | GGGCCC | 1 cut(s) | 1045 |
| Bsp1286I | GDGCHC | 3 cut(s) | 344, 421, 1049 |
| Bsp143I | GATC | 2 cut(s) | 397, 499 |
| BspACI | CCGC | 5 cut(s) | 47, 204, 224, 1078, 1091 |
| BspANI | GGCC | 9 cut(s) | 71, 176, 227, 238, 250, 260, 946, 1047, 1200 |
| BspCNI | CTCAG | 1 cut(s) | 824 |
| BspLI | GGNNCC | 4 cut(s) | 177, 249, 955, 1047 |
| BspMAI | CTGCAG | 1 cut(s) | 1275 |
| BspMI | ACCTGC | 6 cut(s) | 340, 363, 385, 397, 430, 442 |
| BspPI | GGATC | 1 cut(s) | 405 |
| BspQI | GCTCTTC | 1 cut(s) | 729 |
| BspTNI | GGTCTC | 3 cut(s) | 322, 345, 367 |
| BsrBI | CCGCTC | 1 cut(s) | 1091 |
| BsrFI | RCCGGY | 1 cut(s) | 256 |
| BssAI | RCCGGY | 1 cut(s) | 256 |
| BssECI | CCNNGG | 4 cut(s) | 245, 393, 1201, 1243 |
| BssMI | GATC | 2 cut(s) | 397, 499 |
| BssSI | CACGAG | 1 cut(s) | 1098 |
| BssT1I | CCWWGG | 1 cut(s) | 1243 |
| Bst2BI | CACGAG | 1 cut(s) | 1098 |
| Bst2UI | CCWGG | 1 cut(s) | 173 |
| Bst4CI | ACNGT | 1 cut(s) | 33 |
| Bst6I | CTCTTC | 3 cut(s) | 155, 729, 765 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 411 |
| BstBAI | YACGTR | 4 cut(s) | 1118, 1136, 1151, 1169 |
| BstC8I | GCNNGC | 1 cut(s) | 1004 |
| BstDEI | CTNAG | 1 cut(s) | 811 |
| BstDSI | CCRYGG | 1 cut(s) | 1201 |
| BstF5I | GGATG | 3 cut(s) | 453, 596, 918 |
| BstHHI | GCGC | 2 cut(s) | 405, 1002 |
| BstKTI | GATC | 2 cut(s) | 400, 502 |
| BstMAI | GTCTC | 4 cut(s) | 322, 345, 367, 814 |
| BstMBI | GATC | 2 cut(s) | 397, 499 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 46, 411, 1006, 1053 |
| BstNI | CCWGG | 1 cut(s) | 173 |
| BstSCI | CCNGG | 4 cut(s) | 171, 244, 314, 586 |
| BstSFI | CTRYAG | 1 cut(s) | 1271 |
| BstSLI | GKGCMC | 1 cut(s) | 1049 |
| BstV1I | GCAGC | 8 cut(s) | 180, 398, 417, 420, 455, 477, 499, 1018 |
| BstV2I | GAAGAC | 1 cut(s) | 794 |
| BstX2I | RGATCY | 2 cut(s) | 397, 499 |
| BstYI | RGATCY | 2 cut(s) | 397, 499 |
| BsuI | GTATCC | 2 cut(s) | 631, 1175 |
| BsuRI | GGCC | 9 cut(s) | 71, 176, 227, 238, 250, 260, 946, 1047, 1200 |
| BtgI | CCRYGG | 1 cut(s) | 1201 |
| BtrI | CACGTC | 1 cut(s) | 1223 |
| BtsCI | GGATG | 3 cut(s) | 453, 596, 918 |
| BtsIMutI | CAGTG | 1 cut(s) | 671 |
| BveI | ACCTGC | 6 cut(s) | 340, 363, 385, 397, 430, 442 |
| Cac8I | GCNNGC | 1 cut(s) | 1004 |
| CaiI | CAGNNNCTG | 1 cut(s) | 411 |
| CfoI | GCGC | 2 cut(s) | 405, 1002 |
| Cfr10I | RCCGGY | 1 cut(s) | 256 |
| Cfr13I | GGNCC | 7 cut(s) | 175, 226, 248, 945, 1045, 1046, 1198 |
| CseI | GACGC | 1 cut(s) | 952 |
| Csp6I | GTAC | 1 cut(s) | 1041 |
| CviAII | CATG | 2 cut(s) | 13, 739 |
| CviQI | GTAC | 1 cut(s) | 1041 |
| DdeI | CTNAG | 1 cut(s) | 811 |
| DpnI | GATC | 2 cut(s) | 399, 501 |
| DpnII | GATC | 2 cut(s) | 397, 499 |
| DraIII | CACNNNGTG | 2 cut(s) | 1121, 1154 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 502 |
| DriI | GACNNNNNGTC | 1 cut(s) | 694 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 502 |
| EaeI | YGGCCR | 3 cut(s) | 69, 236, 258 |
| Eam1104I | CTCTTC | 3 cut(s) | 155, 729, 765 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 694 |
| EarI | CTCTTC | 3 cut(s) | 155, 729, 765 |
| EciI | GGCGGA | 1 cut(s) | 36 |
| Ecl136II | GAGCTC | 1 cut(s) | 342 |
| Eco130I | CCWWGG | 1 cut(s) | 1243 |
| Eco24I | GRGCYC | 2 cut(s) | 344, 1049 |
| Eco31I | GGTCTC | 3 cut(s) | 322, 345, 367 |
| Eco32I | GATATC | 1 cut(s) | 825 |
| Eco53kI | GAGCTC | 1 cut(s) | 342 |
| Eco72I | CACGTG | 4 cut(s) | 1118, 1136, 1151, 1169 |
| EcoICRI | GAGCTC | 1 cut(s) | 342 |
| EcoO109I | RGGNCCY | 1 cut(s) | 248 |
| EcoRII | CCWGG | 1 cut(s) | 171 |
| EcoRV | GATATC | 1 cut(s) | 825 |
| EcoT14I | CCWWGG | 1 cut(s) | 1243 |
| EcoT38I | GRGCYC | 2 cut(s) | 344, 1049 |
| ErhI | CCWWGG | 1 cut(s) | 1243 |
| Esp3I | CGTCTC | 1 cut(s) | 814 |
| FaeI | CATG | 2 cut(s) | 16, 742 |
| FaqI | GGGAC | 1 cut(s) | 1041 |
| FatI | CATG | 2 cut(s) | 12, 738 |
| FblI | GTMKAC | 2 cut(s) | 198, 494 |
| FokI | GGATG | 3 cut(s) | 440, 603, 905 |
| FriOI | GRGCYC | 2 cut(s) | 344, 1049 |
| FspBI | CTAG | 3 cut(s) | 462, 605, 1244 |
| FspI | TGCGCA | 1 cut(s) | 404 |
| GlaI | GCGC | 2 cut(s) | 404, 1001 |
| HaeIII | GGCC | 9 cut(s) | 71, 176, 227, 238, 250, 260, 946, 1047, 1200 |
| HgaI | GACGC | 1 cut(s) | 952 |
| HhaI | GCGC | 2 cut(s) | 405, 1002 |
| Hin1II | CATG | 2 cut(s) | 16, 742 |
| Hin6I | GCGC | 2 cut(s) | 403, 1000 |
| HinP1I | GCGC | 2 cut(s) | 403, 1000 |
| HincII | GTYRAC | 2 cut(s) | 199, 495 |
| HindII | GTYRAC | 2 cut(s) | 199, 495 |
| HinfI | GANTC | 4 cut(s) | 53, 307, 628, 790 |
| Hpy166II | GTNNAC | 2 cut(s) | 199, 495 |
| Hpy188I | TCNGA | 6 cut(s) | 118, 520, 531, 565, 688, 718 |
| Hpy188III | TCNNGA | 2 cut(s) | 57, 76 |
| Hpy8I | GTNNAC | 2 cut(s) | 199, 495 |
| Hpy99I | CGWCG | 1 cut(s) | 203 |
| HpyAV | CCTTC | 1 cut(s) | 652 |
| HpyCH4III | ACNGT | 1 cut(s) | 33 |
| HpyCH4IV | ACGT | 5 cut(s) | 1117, 1135, 1150, 1168, 1222 |
| HpyCH4V | TGCA | 4 cut(s) | 40, 755, 986, 1273 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 46, 411, 1006, 1053 |
| HpyF3I | CTNAG | 1 cut(s) | 811 |
| HpySE526I | ACGT | 5 cut(s) | 1117, 1135, 1150, 1168, 1222 |
| Hsp92II | CATG | 2 cut(s) | 16, 742 |
| HspAI | GCGC | 2 cut(s) | 403, 1000 |
| Kzo9I | GATC | 2 cut(s) | 397, 499 |
| LguI | GCTCTTC | 1 cut(s) | 729 |
| LmnI | GCTCC | 4 cut(s) | 165, 347, 775, 1281 |
| Lsp1109I | GCAGC | 8 cut(s) | 180, 398, 417, 420, 455, 477, 499, 1018 |
| LweI | GCATC | 5 cut(s) | 328, 373, 451, 462, 1221 |
| MaeI | CTAG | 3 cut(s) | 462, 605, 1244 |
| MaeII | ACGT | 5 cut(s) | 1117, 1135, 1150, 1168, 1222 |
| MaeIII | GTNAC | 3 cut(s) | 1124, 1139, 1234 |
| MalI | GATC | 2 cut(s) | 399, 501 |
| MbiI | CCGCTC | 1 cut(s) | 1091 |
| MboI | GATC | 2 cut(s) | 397, 499 |
| MboII | GAAGA | 4 cut(s) | 172, 716, 782, 799 |
| MfeI | CAATTG | 1 cut(s) | 816 |
| MflI | RGATCY | 2 cut(s) | 397, 499 |
| MhlI | GDGCHC | 3 cut(s) | 344, 421, 1049 |
| MlyI | GAGTC | 3 cut(s) | 316, 622, 784 |
| MmeI | TCCRAC | 3 cut(s) | 7, 588, 711 |
| MroXI | GAANNNNTTC | 1 cut(s) | 723 |
| MseI | TTAA | 4 cut(s) | 611, 693, 873, 885 |
| MspA1I | CMGCKG | 3 cut(s) | 411, 468, 490 |
| MspR9I | CCNGG | 4 cut(s) | 173, 246, 316, 588 |
| MunI | CAATTG | 1 cut(s) | 816 |
| MvaI | CCWGG | 1 cut(s) | 173 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 46, 411, 1006, 1053 |
| NciI | CCSGG | 3 cut(s) | 246, 316, 588 |
| NdeII | GATC | 2 cut(s) | 397, 499 |
| NlaIII | CATG | 2 cut(s) | 16, 742 |
| NlaIV | GGNNCC | 4 cut(s) | 177, 249, 955, 1047 |
| NsbI | TGCGCA | 1 cut(s) | 404 |
| PaqCI | CACCTGC | 3 cut(s) | 397, 430, 442 |
| PciSI | GCTCTTC | 1 cut(s) | 729 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 561 |
| PdmI | GAANNNNTTC | 1 cut(s) | 723 |
| PfeI | GAWTC | 1 cut(s) | 53 |
| Pfl23II | CGTACG | 1 cut(s) | 1040 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1261 |
| PfoI | TCCNGGA | 1 cut(s) | 586 |
| PleI | GAGTC | 3 cut(s) | 315, 622, 784 |
| PmaCI | CACGTG | 4 cut(s) | 1118, 1136, 1151, 1169 |
| PmlI | CACGTG | 4 cut(s) | 1118, 1136, 1151, 1169 |
| PpsI | GAGTC | 3 cut(s) | 315, 622, 784 |
| Ppu21I | YACGTR | 4 cut(s) | 1118, 1136, 1151, 1169 |
| PshBI | ATTAAT | 1 cut(s) | 885 |
| PsiI | TTATAA | 1 cut(s) | 981 |
| Psp124BI | GAGCTC | 1 cut(s) | 344 |
| Psp6I | CCWGG | 1 cut(s) | 171 |
| PspCI | CACGTG | 4 cut(s) | 1118, 1136, 1151, 1169 |
| PspGI | CCWGG | 1 cut(s) | 171 |
| PspLI | CGTACG | 1 cut(s) | 1040 |
| PspN4I | GGNNCC | 4 cut(s) | 177, 249, 955, 1047 |
| PspOMI | GGGCCC | 1 cut(s) | 1045 |
| PspPI | GGNCC | 7 cut(s) | 175, 226, 248, 945, 1045, 1046, 1198 |
| PstI | CTGCAG | 1 cut(s) | 1275 |
| PstNI | CAGNNNCTG | 1 cut(s) | 411 |
| PsuI | RGATCY | 2 cut(s) | 397, 499 |
| PvuII | CAGCTG | 3 cut(s) | 411, 468, 490 |
| RsaI | GTAC | 1 cut(s) | 1042 |
| RsaNI | GTAC | 1 cut(s) | 1041 |
| SacI | GAGCTC | 1 cut(s) | 344 |
| SalI | GTCGAC | 2 cut(s) | 197, 493 |
| SapI | GCTCTTC | 1 cut(s) | 729 |
| SaqAI | TTAA | 4 cut(s) | 611, 693, 873, 885 |
| Sau3AI | GATC | 2 cut(s) | 397, 499 |
| Sau96I | GGNCC | 7 cut(s) | 175, 226, 248, 945, 1045, 1046, 1198 |
| SchI | GAGTC | 3 cut(s) | 316, 622, 784 |
| ScrFI | CCNGG | 4 cut(s) | 173, 246, 316, 588 |
| SduI | GDGCHC | 3 cut(s) | 344, 421, 1049 |
| SfaNI | GCATC | 5 cut(s) | 328, 373, 451, 462, 1221 |
| SfcI | CTRYAG | 1 cut(s) | 1271 |
| SsiI | CCGC | 5 cut(s) | 47, 204, 224, 1078, 1091 |
| SspMI | CTAG | 3 cut(s) | 462, 605, 1244 |
| SstI | GAGCTC | 1 cut(s) | 344 |
| StyD4I | CCNGG | 4 cut(s) | 171, 244, 314, 586 |
| StyI | CCWWGG | 1 cut(s) | 1243 |
| TaaI | ACNGT | 1 cut(s) | 33 |
| TaiI | ACGT | 5 cut(s) | 1120, 1138, 1153, 1171, 1225 |
| TaqI | TCGA | 5 cut(s) | 198, 294, 494, 506, 595 |
| TauI | GCSGC | 2 cut(s) | 207, 227 |
| TfiI | GAWTC | 1 cut(s) | 53 |
| Tru1I | TTAA | 4 cut(s) | 611, 693, 873, 885 |
| Tru9I | TTAA | 4 cut(s) | 611, 693, 873, 885 |
| TscAI | CASTG | 1 cut(s) | 671 |
| TseI | GCWGC | 9 cut(s) | 168, 405, 408, 411, 465, 468, 487, 1006, 1273 |
| TspDTI | ATGAA | 5 cut(s) | 17, 99, 149, 173, 614 |
| TspGWI | ACGGA | 2 cut(s) | 95, 956 |
| TspRI | CASTG | 1 cut(s) | 671 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1261 |
| VspI | ATTAAT | 1 cut(s) | 885 |
| XapI | RAATTY | 3 cut(s) | 42, 60, 216 |
| XmaJI | CCTAGG | 1 cut(s) | 1243 |
| XmiI | GTMKAC | 2 cut(s) | 198, 494 |
| XmnI | GAANNNNTTC | 1 cut(s) | 723 |
| XspI | CTAG | 3 cut(s) | 462, 605, 1244 |