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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 306, 587 |
| AatII | GACGTC | 1 cut(s) | 591 |
| AccB1I | GGYRCC | 1 cut(s) | 368 |
| AccBSI | CCGCTC | 1 cut(s) | 271 |
| AciI | CCGC | 2 cut(s) | 271, 642 |
| AclWI | GGATC | 1 cut(s) | 466 |
| AcuI | CTGAAG | 1 cut(s) | 180 |
| AcyI | GRCGYC | 1 cut(s) | 588 |
| AdeI | CACNNNGTG | 1 cut(s) | 407 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 257, 258, 328, 383 |
| AflIII | ACRYGT | 2 cut(s) | 301, 441 |
| AgsI | TTSAA | 4 cut(s) | 167, 204, 478, 638 |
| AjiI | CACGTC | 1 cut(s) | 302 |
| AluBI | AGCT | 3 cut(s) | 40, 276, 560 |
| AluI | AGCT | 3 cut(s) | 40, 276, 560 |
| Alw21I | GWGCWC | 2 cut(s) | 278, 412 |
| Alw26I | GTCTC | 1 cut(s) | 76 |
| Alw44I | GTGCAC | 1 cut(s) | 408 |
| AlwI | GGATC | 1 cut(s) | 466 |
| AoxI | GGCC | 1 cut(s) | 206 |
| ApaLI | GTGCAC | 1 cut(s) | 408 |
| AspA2I | CCTAGG | 1 cut(s) | 380 |
| AspS9I | GGNCC | 2 cut(s) | 207, 308 |
| AsuHPI | GGTGA | 1 cut(s) | 632 |
| AvaII | GGWCC | 1 cut(s) | 308 |
| AvrII | CCTAGG | 1 cut(s) | 380 |
| BaeGI | GKGCMC | 1 cut(s) | 412 |
| BanI | GGYRCC | 1 cut(s) | 368 |
| BanII | GRGCYC | 1 cut(s) | 278 |
| Bbv12I | GWGCWC | 2 cut(s) | 278, 412 |
| BccI | CCATC | 3 cut(s) | 71, 449, 566 |
| BceAI | ACGGC | 1 cut(s) | 342 |
| BclI | TGATCA | 1 cut(s) | 123 |
| BcoDI | GTCTC | 1 cut(s) | 76 |
| BfaI | CTAG | 2 cut(s) | 185, 381 |
| BisI | GCNGC | 1 cut(s) | 642 |
| BlnI | CCTAGG | 1 cut(s) | 380 |
| BlsI | GCNGC | 1 cut(s) | 643 |
| Bme18I | GGWCC | 1 cut(s) | 308 |
| BmgBI | CACGTC | 1 cut(s) | 302 |
| BmgT120I | GGNCC | 2 cut(s) | 207, 308 |
| BmiI | GGNNCC | 4 cut(s) | 309, 346, 370, 431 |
| BmrI | ACTGGG | 1 cut(s) | 62 |
| BmuI | ACTGGG | 1 cut(s) | 62 |
| BoxI | GACNNNNGTC | 1 cut(s) | 444 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 260, 292 |
| BpuEI | CTTGAG | 1 cut(s) | 553 |
| BsaHI | GRCGYC | 1 cut(s) | 588 |
| BsaJI | CCNNGG | 1 cut(s) | 380 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 257, 258, 328, 383 |
| Bse1I | ACTGG | 1 cut(s) | 68 |
| BseDI | CCNNGG | 1 cut(s) | 380 |
| BseGI | GGATG | 4 cut(s) | 63, 180, 341, 388 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 257, 258, 328, 383 |
| BseMII | CTCAG | 1 cut(s) | 87 |
| BseNI | ACTGG | 1 cut(s) | 68 |
| BseSI | GKGCMC | 1 cut(s) | 412 |
| BshFI | GGCC | 1 cut(s) | 208 |
| BshNI | GGYRCC | 1 cut(s) | 368 |
| BsiHKAI | GWGCWC | 2 cut(s) | 278, 412 |
| BslFI | GGGAC | 3 cut(s) | 303, 399, 542 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 257, 258, 328, 383 |
| BsmAI | GTCTC | 1 cut(s) | 76 |
| BsmFI | GGGAC | 3 cut(s) | 303, 399, 542 |
| BsnI | GGCC | 1 cut(s) | 208 |
| Bsp1286I | GDGCHC | 2 cut(s) | 278, 412 |
| Bsp143I | GATC | 3 cut(s) | 31, 123, 458 |
| BspACI | CCGC | 2 cut(s) | 271, 642 |
| BspANI | GGCC | 1 cut(s) | 208 |
| BspCNI | CTCAG | 1 cut(s) | 86 |
| BspHI | TCATGA | 1 cut(s) | 126 |
| BspLI | GGNNCC | 4 cut(s) | 309, 346, 370, 431 |
| BspPI | GGATC | 1 cut(s) | 466 |
| BspT107I | GGYRCC | 1 cut(s) | 368 |
| BsrBI | CCGCTC | 1 cut(s) | 271 |
| BsrI | ACTGG | 1 cut(s) | 68 |
| BssECI | CCNNGG | 1 cut(s) | 380 |
| BssMI | GATC | 3 cut(s) | 31, 123, 458 |
| BssNI | GRCGYC | 1 cut(s) | 588 |
| BssT1I | CCWWGG | 1 cut(s) | 380 |
| BstACI | GRCGYC | 1 cut(s) | 588 |
| BstC8I | GCNNGC | 1 cut(s) | 493 |
| BstDEI | CTNAG | 2 cut(s) | 73, 219 |
| BstF5I | GGATG | 4 cut(s) | 63, 180, 341, 388 |
| BstKTI | GATC | 3 cut(s) | 34, 126, 461 |
| BstMAI | GTCTC | 1 cut(s) | 76 |
| BstMBI | GATC | 3 cut(s) | 31, 123, 458 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 268, 492 |
| BstNSI | RCATGY | 1 cut(s) | 445 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 444 |
| BstSLI | GKGCMC | 1 cut(s) | 412 |
| BsuRI | GGCC | 1 cut(s) | 208 |
| BtrI | CACGTC | 1 cut(s) | 302 |
| BtsCI | GGATG | 4 cut(s) | 63, 180, 341, 388 |
| BtsI | GCAGTG | 1 cut(s) | 493 |
| BtsIMutI | CAGTG | 1 cut(s) | 493 |
| Cac8I | GCNNGC | 1 cut(s) | 493 |
| CciI | TCATGA | 1 cut(s) | 126 |
| Cfr13I | GGNCC | 2 cut(s) | 207, 308 |
| CviAII | CATG | 4 cut(s) | 127, 173, 352, 442 |
| CviJI | RGCY | 9 cut(s) | 40, 208, 276, 347, 357, 506, 548, 560, 641 |
| CviKI_1 | RGCY | 9 cut(s) | 40, 208, 276, 347, 357, 506, 548, 560, 641 |
| DdeI | CTNAG | 2 cut(s) | 73, 219 |
| DpnI | GATC | 3 cut(s) | 33, 125, 460 |
| DpnII | GATC | 3 cut(s) | 31, 123, 458 |
| DraIII | CACNNNGTG | 1 cut(s) | 407 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 306, 587 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 306, 587 |
| Ecl136II | GAGCTC | 1 cut(s) | 276 |
| Eco130I | CCWWGG | 1 cut(s) | 380 |
| Eco24I | GRGCYC | 1 cut(s) | 278 |
| Eco47I | GGWCC | 1 cut(s) | 308 |
| Eco53kI | GAGCTC | 1 cut(s) | 276 |
| Eco57I | CTGAAG | 1 cut(s) | 180 |
| EcoICRI | GAGCTC | 1 cut(s) | 276 |
| EcoT14I | CCWWGG | 1 cut(s) | 380 |
| EcoT38I | GRGCYC | 1 cut(s) | 278 |
| ErhI | CCWWGG | 1 cut(s) | 380 |
| FaeI | CATG | 4 cut(s) | 130, 176, 355, 445 |
| FaqI | GGGAC | 3 cut(s) | 303, 399, 542 |
| FatI | CATG | 4 cut(s) | 126, 172, 351, 441 |
| FauNDI | CATATG | 1 cut(s) | 313 |
| FbaI | TGATCA | 1 cut(s) | 123 |
| Fnu4HI | GCNGC | 1 cut(s) | 642 |
| FokI | GGATG | 4 cut(s) | 50, 167, 348, 375 |
| FriOI | GRGCYC | 1 cut(s) | 278 |
| Fsp4HI | GCNGC | 1 cut(s) | 642 |
| FspBI | CTAG | 2 cut(s) | 185, 381 |
| GluI | GCNGC | 1 cut(s) | 642 |
| HaeIII | GGCC | 1 cut(s) | 208 |
| Hin1I | GRCGYC | 1 cut(s) | 588 |
| Hin1II | CATG | 4 cut(s) | 130, 176, 355, 445 |
| HinfI | GANTC | 2 cut(s) | 9, 608 |
| HphI | GGTGA | 1 cut(s) | 632 |
| Hpy166II | GTNNAC | 2 cut(s) | 229, 410 |
| Hpy188I | TCNGA | 1 cut(s) | 160 |
| Hpy188III | TCNNGA | 3 cut(s) | 35, 127, 452 |
| Hpy8I | GTNNAC | 2 cut(s) | 229, 410 |
| HpyAV | CCTTC | 1 cut(s) | 326 |
| HpyCH4IV | ACGT | 2 cut(s) | 301, 588 |
| HpyCH4V | TGCA | 4 cut(s) | 248, 410, 486, 491 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 268, 492 |
| HpyF3I | CTNAG | 2 cut(s) | 73, 219 |
| HpySE526I | ACGT | 2 cut(s) | 301, 588 |
| Hsp92I | GRCGYC | 1 cut(s) | 588 |
| Hsp92II | CATG | 4 cut(s) | 130, 176, 355, 445 |
| Ksp22I | TGATCA | 1 cut(s) | 123 |
| Kzo9I | GATC | 3 cut(s) | 31, 123, 458 |
| LmnI | GCTCC | 3 cut(s) | 268, 273, 344 |
| LpnPI | CCDG | 2 cut(s) | 81, 603 |
| MaeI | CTAG | 2 cut(s) | 185, 381 |
| MaeII | ACGT | 2 cut(s) | 301, 588 |
| MalI | GATC | 3 cut(s) | 33, 125, 460 |
| MbiI | CCGCTC | 1 cut(s) | 271 |
| MboI | GATC | 3 cut(s) | 31, 123, 458 |
| MboII | GAAGA | 1 cut(s) | 202 |
| MhlI | GDGCHC | 2 cut(s) | 278, 412 |
| MluCI | AATT | 5 cut(s) | 42, 199, 238, 416, 592 |
| MlyI | GAGTC | 1 cut(s) | 602 |
| MmeI | TCCRAC | 1 cut(s) | 97 |
| MnlI | CCTC | 5 cut(s) | 226, 251, 419, 423, 616 |
| MseI | TTAA | 1 cut(s) | 419 |
| MslI | CAYNNNNRTG | 2 cut(s) | 185, 453 |
| MspA1I | CMGCKG | 1 cut(s) | 560 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 268, 492 |
| NdeI | CATATG | 1 cut(s) | 313 |
| NdeII | GATC | 3 cut(s) | 31, 123, 458 |
| NlaIII | CATG | 4 cut(s) | 130, 176, 355, 445 |
| NlaIV | GGNNCC | 4 cut(s) | 309, 346, 370, 431 |
| NspI | RCATGY | 1 cut(s) | 445 |
| PagI | TCATGA | 1 cut(s) | 126 |
| PciI | ACATGT | 1 cut(s) | 441 |
| PfeI | GAWTC | 1 cut(s) | 9 |
| PkrI | GCNGC | 1 cut(s) | 643 |
| PleI | GAGTC | 1 cut(s) | 602 |
| PpsI | GAGTC | 1 cut(s) | 602 |
| PscI | ACATGT | 1 cut(s) | 441 |
| PshAI | GACNNNNGTC | 1 cut(s) | 444 |
| Psp124BI | GAGCTC | 1 cut(s) | 278 |
| PspN4I | GGNNCC | 4 cut(s) | 309, 346, 370, 431 |
| PspPI | GGNCC | 2 cut(s) | 207, 308 |
| PvuII | CAGCTG | 1 cut(s) | 560 |
| RseI | CAYNNNNRTG | 2 cut(s) | 185, 453 |
| SacI | GAGCTC | 1 cut(s) | 278 |
| SaqAI | TTAA | 1 cut(s) | 419 |
| SatI | GCNGC | 1 cut(s) | 642 |
| Sau3AI | GATC | 3 cut(s) | 31, 123, 458 |
| Sau96I | GGNCC | 2 cut(s) | 207, 308 |
| SchI | GAGTC | 1 cut(s) | 602 |
| SduI | GDGCHC | 2 cut(s) | 278, 412 |
| SetI | ASST | 7 cut(s) | 42, 278, 304, 409, 415, 562, 591 |
| SinI | GGWCC | 1 cut(s) | 308 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 185, 453 |
| SmlI | CTYRAG | 1 cut(s) | 532 |
| SmoI | CTYRAG | 1 cut(s) | 532 |
| Sse9I | AATT | 5 cut(s) | 42, 199, 238, 416, 592 |
| SsiI | CCGC | 2 cut(s) | 271, 642 |
| SspMI | CTAG | 2 cut(s) | 185, 381 |
| SstI | GAGCTC | 1 cut(s) | 278 |
| StyI | CCWWGG | 1 cut(s) | 380 |
| TaiI | ACGT | 2 cut(s) | 304, 591 |
| TaqI | TCGA | 1 cut(s) | 451 |
| TasI | AATT | 5 cut(s) | 42, 199, 238, 416, 592 |
| TauI | GCSGC | 1 cut(s) | 644 |
| TfiI | GAWTC | 1 cut(s) | 9 |
| Tru1I | TTAA | 1 cut(s) | 419 |
| Tru9I | TTAA | 1 cut(s) | 419 |
| TscAI | CASTG | 1 cut(s) | 493 |
| TspDTI | ATGAA | 2 cut(s) | 35, 125 |
| TspRI | CASTG | 1 cut(s) | 493 |
| VneI | GTGCAC | 1 cut(s) | 408 |
| VpaK11BI | GGWCC | 1 cut(s) | 308 |
| XceI | RCATGY | 1 cut(s) | 445 |
| XmaJI | CCTAGG | 1 cut(s) | 380 |
| XspI | CTAG | 2 cut(s) | 185, 381 |
| ZraI | GACGTC | 1 cut(s) | 589 |