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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 306 |
| AccB1I | GGYRCC | 2 cut(s) | 146, 460 |
| AccII | CGCG | 2 cut(s) | 246, 450 |
| AccIII | TCCGGA | 1 cut(s) | 226 |
| AciI | CCGC | 1 cut(s) | 396 |
| AclWI | GGATC | 1 cut(s) | 528 |
| AcoI | YGGCCR | 1 cut(s) | 13 |
| AcyI | GRCGYC | 1 cut(s) | 461 |
| AfaI | GTAC | 1 cut(s) | 549 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 257, 328 |
| AflIII | ACRYGT | 2 cut(s) | 376, 544 |
| AgsI | TTSAA | 1 cut(s) | 87 |
| AluBI | AGCT | 2 cut(s) | 139, 161 |
| AluI | AGCT | 2 cut(s) | 139, 161 |
| Alw21I | GWGCWC | 2 cut(s) | 141, 358 |
| Alw26I | GTCTC | 1 cut(s) | 73 |
| Alw44I | GTGCAC | 1 cut(s) | 354 |
| AlwI | GGATC | 1 cut(s) | 528 |
| Aor13HI | TCCGGA | 1 cut(s) | 226 |
| AoxI | GGCC | 2 cut(s) | 13, 536 |
| ApaLI | GTGCAC | 1 cut(s) | 354 |
| AspLEI | GCGC | 3 cut(s) | 248, 452, 463 |
| AspS9I | GGNCC | 1 cut(s) | 308 |
| AvaII | GGWCC | 1 cut(s) | 308 |
| BaeGI | GKGCMC | 1 cut(s) | 358 |
| BalI | TGGCCA | 1 cut(s) | 15 |
| BanI | GGYRCC | 2 cut(s) | 146, 460 |
| BanII | GRGCYC | 1 cut(s) | 141 |
| BbsI | GAAGAC | 1 cut(s) | 53 |
| Bbv12I | GWGCWC | 2 cut(s) | 141, 358 |
| BccI | CCATC | 1 cut(s) | 625 |
| BcoDI | GTCTC | 1 cut(s) | 73 |
| BfaI | CTAG | 2 cut(s) | 201, 640 |
| BfoI | RGCGCY | 1 cut(s) | 464 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 458 |
| Bme18I | GGWCC | 1 cut(s) | 308 |
| BmgT120I | GGNCC | 1 cut(s) | 308 |
| BmiI | GGNNCC | 5 cut(s) | 148, 362, 400, 462, 477 |
| BmsI | GCATC | 1 cut(s) | 251 |
| BpiI | GAAGAC | 1 cut(s) | 53 |
| BsaBI | GATNNNNATC | 3 cut(s) | 38, 519, 635 |
| BsaHI | GRCGYC | 1 cut(s) | 461 |
| BsaJI | CCNNGG | 3 cut(s) | 207, 364, 409 |
| BsaWI | WCCGGW | 1 cut(s) | 226 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 257, 328 |
| Bse8I | GATNNNNATC | 3 cut(s) | 38, 519, 635 |
| BseAI | TCCGGA | 1 cut(s) | 226 |
| BseDI | CCNNGG | 3 cut(s) | 207, 364, 409 |
| BseGI | GGATG | 2 cut(s) | 266, 496 |
| BseJI | GATNNNNATC | 3 cut(s) | 38, 519, 635 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 257, 328 |
| BseSI | GKGCMC | 1 cut(s) | 358 |
| BsgI | GTGCAG | 1 cut(s) | 57 |
| Bsh1236I | CGCG | 2 cut(s) | 246, 450 |
| BshFI | GGCC | 2 cut(s) | 15, 538 |
| BshNI | GGYRCC | 2 cut(s) | 146, 460 |
| BsiHKAI | GWGCWC | 2 cut(s) | 141, 358 |
| BsiSI | CCGG | 1 cut(s) | 227 |
| BslFI | GGGAC | 1 cut(s) | 302 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 257, 328 |
| BsmAI | GTCTC | 1 cut(s) | 73 |
| BsmBI | CGTCTC | 1 cut(s) | 73 |
| BsmFI | GGGAC | 1 cut(s) | 302 |
| BsnI | GGCC | 2 cut(s) | 15, 538 |
| Bsp1286I | GDGCHC | 2 cut(s) | 141, 358 |
| Bsp13I | TCCGGA | 1 cut(s) | 226 |
| Bsp1407I | TGTACA | 1 cut(s) | 547 |
| Bsp143I | GATC | 4 cut(s) | 467, 520, 624, 636 |
| Bsp19I | CCATGG | 1 cut(s) | 409 |
| BspACI | CCGC | 1 cut(s) | 396 |
| BspANI | GGCC | 2 cut(s) | 15, 538 |
| BspEI | TCCGGA | 1 cut(s) | 226 |
| BspFNI | CGCG | 2 cut(s) | 246, 450 |
| BspHI | TCATGA | 1 cut(s) | 133 |
| BspLI | GGNNCC | 5 cut(s) | 148, 362, 400, 462, 477 |
| BspPI | GGATC | 1 cut(s) | 528 |
| BspT107I | GGYRCC | 2 cut(s) | 146, 460 |
| BsrGI | TGTACA | 1 cut(s) | 547 |
| BssECI | CCNNGG | 3 cut(s) | 207, 364, 409 |
| BssMI | GATC | 4 cut(s) | 467, 520, 624, 636 |
| BssNI | GRCGYC | 1 cut(s) | 461 |
| BssT1I | CCWWGG | 1 cut(s) | 409 |
| Bst4CI | ACNGT | 1 cut(s) | 365 |
| Bst6I | CTCTTC | 1 cut(s) | 377 |
| BstACI | GRCGYC | 1 cut(s) | 461 |
| BstAUI | TGTACA | 1 cut(s) | 547 |
| BstC8I | GCNNGC | 1 cut(s) | 354 |
| BstDEI | CTNAG | 2 cut(s) | 216, 279 |
| BstDSI | CCRYGG | 3 cut(s) | 207, 364, 409 |
| BstF5I | GGATG | 2 cut(s) | 266, 496 |
| BstFNI | CGCG | 2 cut(s) | 246, 450 |
| BstH2I | RGCGCY | 1 cut(s) | 464 |
| BstHHI | GCGC | 3 cut(s) | 248, 452, 463 |
| BstKTI | GATC | 4 cut(s) | 470, 523, 627, 639 |
| BstMAI | GTCTC | 1 cut(s) | 73 |
| BstMBI | GATC | 4 cut(s) | 467, 520, 624, 636 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 458, 601 |
| BstNSI | RCATGY | 1 cut(s) | 548 |
| BstSLI | GKGCMC | 1 cut(s) | 358 |
| BstUI | CGCG | 2 cut(s) | 246, 450 |
| BstV2I | GAAGAC | 1 cut(s) | 53 |
| BsuRI | GGCC | 2 cut(s) | 15, 538 |
| BtgI | CCRYGG | 3 cut(s) | 207, 364, 409 |
| BtsCI | GGATG | 2 cut(s) | 266, 496 |
| BtsIMutI | CAGTG | 1 cut(s) | 74 |
| Cac8I | GCNNGC | 1 cut(s) | 354 |
| CciI | TCATGA | 1 cut(s) | 133 |
| CfoI | GCGC | 3 cut(s) | 248, 452, 463 |
| Cfr13I | GGNCC | 1 cut(s) | 308 |
| Csp6I | GTAC | 1 cut(s) | 548 |
| CviAII | CATG | 5 cut(s) | 134, 151, 410, 545, 612 |
| CviJI | RGCY | 8 cut(s) | 15, 20, 139, 161, 220, 401, 478, 538 |
| CviKI_1 | RGCY | 8 cut(s) | 15, 20, 139, 161, 220, 401, 478, 538 |
| CviQI | GTAC | 1 cut(s) | 548 |
| DdeI | CTNAG | 2 cut(s) | 216, 279 |
| DinI | GGCGCC | 1 cut(s) | 462 |
| DpnI | GATC | 4 cut(s) | 469, 522, 626, 638 |
| DpnII | GATC | 4 cut(s) | 467, 520, 624, 636 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 306 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 306 |
| EaeI | YGGCCR | 1 cut(s) | 13 |
| Eam1104I | CTCTTC | 1 cut(s) | 377 |
| EarI | CTCTTC | 1 cut(s) | 377 |
| EciI | GGCGGA | 1 cut(s) | 411 |
| Ecl136II | GAGCTC | 1 cut(s) | 139 |
| Eco130I | CCWWGG | 1 cut(s) | 409 |
| Eco24I | GRGCYC | 1 cut(s) | 141 |
| Eco47I | GGWCC | 1 cut(s) | 308 |
| Eco53kI | GAGCTC | 1 cut(s) | 139 |
| EcoICRI | GAGCTC | 1 cut(s) | 139 |
| EcoT14I | CCWWGG | 1 cut(s) | 409 |
| EcoT38I | GRGCYC | 1 cut(s) | 141 |
| EgeI | GGCGCC | 1 cut(s) | 462 |
| EheI | GGCGCC | 1 cut(s) | 462 |
| ErhI | CCWWGG | 1 cut(s) | 409 |
| Esp3I | CGTCTC | 1 cut(s) | 73 |
| FaeI | CATG | 5 cut(s) | 137, 154, 413, 548, 615 |
| FaqI | GGGAC | 1 cut(s) | 302 |
| FatI | CATG | 5 cut(s) | 133, 150, 409, 544, 611 |
| FokI | GGATG | 2 cut(s) | 273, 503 |
| FriOI | GRGCYC | 1 cut(s) | 141 |
| FspBI | CTAG | 2 cut(s) | 201, 640 |
| GlaI | GCGC | 3 cut(s) | 247, 451, 462 |
| HaeII | RGCGCY | 1 cut(s) | 464 |
| HaeIII | GGCC | 2 cut(s) | 15, 538 |
| HapII | CCGG | 1 cut(s) | 227 |
| HhaI | GCGC | 3 cut(s) | 248, 452, 463 |
| Hin1I | GRCGYC | 1 cut(s) | 461 |
| Hin1II | CATG | 5 cut(s) | 137, 154, 413, 548, 615 |
| Hin6I | GCGC | 3 cut(s) | 246, 450, 461 |
| HinP1I | GCGC | 3 cut(s) | 246, 450, 461 |
| HincII | GTYRAC | 1 cut(s) | 374 |
| HindII | GTYRAC | 1 cut(s) | 374 |
| HinfI | GANTC | 2 cut(s) | 49, 230 |
| HpaII | CCGG | 1 cut(s) | 227 |
| Hpy166II | GTNNAC | 2 cut(s) | 356, 374 |
| Hpy188I | TCNGA | 2 cut(s) | 99, 406 |
| Hpy188III | TCNNGA | 6 cut(s) | 43, 134, 227, 297, 589, 628 |
| Hpy8I | GTNNAC | 2 cut(s) | 356, 374 |
| HpyAV | CCTTC | 2 cut(s) | 70, 326 |
| HpyCH4III | ACNGT | 1 cut(s) | 365 |
| HpyCH4IV | ACGT | 4 cut(s) | 118, 156, 376, 583 |
| HpyCH4V | TGCA | 5 cut(s) | 74, 113, 264, 356, 568 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 458, 601 |
| HpyF3I | CTNAG | 2 cut(s) | 216, 279 |
| HpySE526I | ACGT | 4 cut(s) | 118, 156, 376, 583 |
| Hsp92I | GRCGYC | 1 cut(s) | 461 |
| Hsp92II | CATG | 5 cut(s) | 137, 154, 413, 548, 615 |
| HspAI | GCGC | 3 cut(s) | 246, 450, 461 |
| KasI | GGCGCC | 1 cut(s) | 460 |
| Kpn2I | TCCGGA | 1 cut(s) | 226 |
| Kzo9I | GATC | 4 cut(s) | 467, 520, 624, 636 |
| LmnI | GCTCC | 3 cut(s) | 268, 398, 475 |
| LpnPI | CCDG | 6 cut(s) | 99, 240, 282, 291, 492, 571 |
| LweI | GCATC | 1 cut(s) | 251 |
| MaeI | CTAG | 2 cut(s) | 201, 640 |
| MaeII | ACGT | 4 cut(s) | 118, 156, 376, 583 |
| MaeIII | GTNAC | 1 cut(s) | 416 |
| MalI | GATC | 4 cut(s) | 469, 522, 626, 638 |
| MboI | GATC | 4 cut(s) | 467, 520, 624, 636 |
| MboII | GAAGA | 5 cut(s) | 58, 199, 308, 394, 634 |
| MhlI | GDGCHC | 2 cut(s) | 141, 358 |
| MlsI | TGGCCA | 1 cut(s) | 15 |
| MluCI | AATT | 4 cut(s) | 91, 235, 292, 606 |
| MluNI | TGGCCA | 1 cut(s) | 15 |
| Mly113I | GGCGCC | 1 cut(s) | 461 |
| MlyI | GAGTC | 2 cut(s) | 43, 239 |
| MmeI | TCCRAC | 1 cut(s) | 429 |
| MnlI | CCTC | 7 cut(s) | 251, 322, 342, 362, 386, 412, 474 |
| Mox20I | TGGCCA | 1 cut(s) | 15 |
| MroI | TCCGGA | 1 cut(s) | 226 |
| MscI | TGGCCA | 1 cut(s) | 15 |
| MseI | TTAA | 1 cut(s) | 38 |
| MslI | CAYNNNNRTG | 1 cut(s) | 489 |
| Msp20I | TGGCCA | 1 cut(s) | 15 |
| MspI | CCGG | 1 cut(s) | 227 |
| MvnI | CGCG | 2 cut(s) | 246, 450 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 458, 601 |
| NarI | GGCGCC | 1 cut(s) | 461 |
| NcoI | CCATGG | 1 cut(s) | 409 |
| NdeII | GATC | 4 cut(s) | 467, 520, 624, 636 |
| NlaIII | CATG | 5 cut(s) | 137, 154, 413, 548, 615 |
| NlaIV | GGNNCC | 5 cut(s) | 148, 362, 400, 462, 477 |
| NmeAIII | GCCGAG | 1 cut(s) | 368 |
| NspI | RCATGY | 1 cut(s) | 548 |
| PagI | TCATGA | 1 cut(s) | 133 |
| PciI | ACATGT | 1 cut(s) | 544 |
| PleI | GAGTC | 2 cut(s) | 43, 238 |
| PluTI | GGCGCC | 1 cut(s) | 464 |
| PpsI | GAGTC | 2 cut(s) | 43, 238 |
| PscI | ACATGT | 1 cut(s) | 544 |
| Psp124BI | GAGCTC | 1 cut(s) | 141 |
| PspN4I | GGNNCC | 5 cut(s) | 148, 362, 400, 462, 477 |
| PspPI | GGNCC | 1 cut(s) | 308 |
| RsaI | GTAC | 1 cut(s) | 549 |
| RsaNI | GTAC | 1 cut(s) | 548 |
| RseI | CAYNNNNRTG | 1 cut(s) | 489 |
| SacI | GAGCTC | 1 cut(s) | 141 |
| SaqAI | TTAA | 1 cut(s) | 38 |
| Sau3AI | GATC | 4 cut(s) | 467, 520, 624, 636 |
| Sau96I | GGNCC | 1 cut(s) | 308 |
| SchI | GAGTC | 2 cut(s) | 43, 239 |
| SduI | GDGCHC | 2 cut(s) | 141, 358 |
| SfaNI | GCATC | 1 cut(s) | 251 |
| SfoI | GGCGCC | 1 cut(s) | 462 |
| SinI | GGWCC | 1 cut(s) | 308 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 489 |
| Sse9I | AATT | 4 cut(s) | 91, 235, 292, 606 |
| SsiI | CCGC | 1 cut(s) | 396 |
| SspDI | GGCGCC | 1 cut(s) | 460 |
| SspI | AATATT | 1 cut(s) | 178 |
| SspMI | CTAG | 2 cut(s) | 201, 640 |
| SstI | GAGCTC | 1 cut(s) | 141 |
| StyI | CCWWGG | 1 cut(s) | 409 |
| TaaI | ACNGT | 1 cut(s) | 365 |
| TaiI | ACGT | 4 cut(s) | 121, 159, 379, 586 |
| TaqI | TCGA | 4 cut(s) | 42, 466, 502, 513 |
| TasI | AATT | 4 cut(s) | 91, 235, 292, 606 |
| TatI | WGTACW | 1 cut(s) | 547 |
| Tru1I | TTAA | 1 cut(s) | 38 |
| Tru9I | TTAA | 1 cut(s) | 38 |
| TscAI | CASTG | 1 cut(s) | 81 |
| TspDTI | ATGAA | 2 cut(s) | 122, 167 |
| TspGWI | ACGGA | 1 cut(s) | 373 |
| TspRI | CASTG | 1 cut(s) | 81 |
| VneI | GTGCAC | 1 cut(s) | 354 |
| VpaK11BI | GGWCC | 1 cut(s) | 308 |
| XceI | RCATGY | 1 cut(s) | 548 |
| XspI | CTAG | 2 cut(s) | 201, 640 |