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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 402, 447 |
| Acc65I | GGTACC | 1 cut(s) | 477 |
| AccB1I | GGYRCC | 1 cut(s) | 477 |
| AccBSI | CCGCTC | 1 cut(s) | 475 |
| AciI | CCGC | 2 cut(s) | 475, 547 |
| AcuI | CTGAAG | 1 cut(s) | 330 |
| AcyI | GRCGYC | 1 cut(s) | 7 |
| AfaI | GTAC | 4 cut(s) | 38, 307, 479, 503 |
| AfeI | AGCGCT | 2 cut(s) | 75, 86 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 210, 461, 462, 556 |
| AflIII | ACRYGT | 2 cut(s) | 39, 496 |
| AgsI | TTSAA | 4 cut(s) | 124, 131, 160, 408 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 160 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 72, 104 |
| AluBI | AGCT | 5 cut(s) | 188, 244, 346, 368, 563 |
| AluI | AGCT | 5 cut(s) | 188, 244, 346, 368, 563 |
| Alw26I | GTCTC | 1 cut(s) | 54 |
| Aor51HI | AGCGCT | 2 cut(s) | 75, 86 |
| ApeKI | GCWGC | 1 cut(s) | 278 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 189 |
| Asp718I | GGTACC | 1 cut(s) | 477 |
| AspLEI | GCGC | 3 cut(s) | 76, 87, 468 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 485, 518 |
| BanI | GGYRCC | 1 cut(s) | 477 |
| BbsI | GAAGAC | 1 cut(s) | 260 |
| BbvI | GCAGC | 1 cut(s) | 290 |
| BccI | CCATC | 1 cut(s) | 281 |
| BcoDI | GTCTC | 1 cut(s) | 54 |
| BfaI | CTAG | 2 cut(s) | 77, 564 |
| BfmI | CTRYAG | 1 cut(s) | 363 |
| BfoI | RGCGCY | 2 cut(s) | 77, 88 |
| BisI | GCNGC | 1 cut(s) | 279 |
| BlsI | GCNGC | 1 cut(s) | 280 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 160 |
| BmiI | GGNNCC | 2 cut(s) | 421, 479 |
| BmsI | GCATC | 1 cut(s) | 43 |
| BpiI | GAAGAC | 1 cut(s) | 260 |
| BsaHI | GRCGYC | 1 cut(s) | 7 |
| BsaI | GGTCTC | 1 cut(s) | 54 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 26, 56 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 210, 461, 462, 556 |
| BseGI | GGATG | 2 cut(s) | 58, 533 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 210, 461, 462, 556 |
| BseMII | CTCAG | 1 cut(s) | 40 |
| BseRI | GAGGAG | 1 cut(s) | 101 |
| BseXI | GCAGC | 1 cut(s) | 290 |
| BshNI | GGYRCC | 1 cut(s) | 477 |
| BslFI | GGGAC | 2 cut(s) | 507, 531 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 210, 461, 462, 556 |
| BsmAI | GTCTC | 1 cut(s) | 54 |
| BsmFI | GGGAC | 2 cut(s) | 507, 531 |
| Bso31I | GGTCTC | 1 cut(s) | 54 |
| Bsp143I | GATC | 1 cut(s) | 45 |
| BspACI | CCGC | 2 cut(s) | 475, 547 |
| BspCNI | CTCAG | 1 cut(s) | 39 |
| BspHI | TCATGA | 2 cut(s) | 390, 433 |
| BspLI | GGNNCC | 2 cut(s) | 421, 479 |
| BspQI | GCTCTTC | 2 cut(s) | 75, 195 |
| BspT107I | GGYRCC | 1 cut(s) | 477 |
| BspTNI | GGTCTC | 1 cut(s) | 54 |
| BsrBI | CCGCTC | 1 cut(s) | 475 |
| BssMI | GATC | 1 cut(s) | 45 |
| BssNI | GRCGYC | 1 cut(s) | 7 |
| Bst6I | CTCTTC | 2 cut(s) | 75, 195 |
| BstACI | GRCGYC | 1 cut(s) | 7 |
| BstDEI | CTNAG | 1 cut(s) | 26 |
| BstF5I | GGATG | 2 cut(s) | 58, 533 |
| BstH2I | RGCGCY | 2 cut(s) | 77, 88 |
| BstHHI | GCGC | 3 cut(s) | 76, 87, 468 |
| BstKTI | GATC | 1 cut(s) | 48 |
| BstMAI | GTCTC | 1 cut(s) | 54 |
| BstMBI | GATC | 1 cut(s) | 45 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 82, 295, 472 |
| BstNSI | RCATGY | 2 cut(s) | 43, 500 |
| BstSFI | CTRYAG | 1 cut(s) | 363 |
| BstV1I | GCAGC | 1 cut(s) | 290 |
| BstV2I | GAAGAC | 1 cut(s) | 260 |
| BtgZI | GCGATG | 1 cut(s) | 259 |
| BtsCI | GGATG | 2 cut(s) | 58, 533 |
| CciI | TCATGA | 2 cut(s) | 390, 433 |
| CfoI | GCGC | 3 cut(s) | 76, 87, 468 |
| CseI | GACGC | 1 cut(s) | 15 |
| Csp6I | GTAC | 4 cut(s) | 37, 306, 478, 502 |
| CviAII | CATG | 8 cut(s) | 13, 40, 205, 377, 391, 434, 497, 521 |
| CviJI | RGCY | 7 cut(s) | 188, 244, 346, 368, 412, 563, 571 |
| CviKI_1 | RGCY | 7 cut(s) | 188, 244, 346, 368, 412, 563, 571 |
| CviQI | GTAC | 4 cut(s) | 37, 306, 478, 502 |
| DdeI | CTNAG | 1 cut(s) | 26 |
| DpnI | GATC | 1 cut(s) | 47 |
| DpnII | GATC | 1 cut(s) | 45 |
| DriI | GACNNNNNGTC | 1 cut(s) | 160 |
| Eam1104I | CTCTTC | 2 cut(s) | 75, 195 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 160 |
| EarI | CTCTTC | 2 cut(s) | 75, 195 |
| Eco31I | GGTCTC | 1 cut(s) | 54 |
| Eco47III | AGCGCT | 2 cut(s) | 75, 86 |
| Eco57I | CTGAAG | 1 cut(s) | 330 |
| FaeI | CATG | 8 cut(s) | 16, 43, 208, 380, 394, 437, 500, 524 |
| FaqI | GGGAC | 2 cut(s) | 507, 531 |
| FatI | CATG | 8 cut(s) | 12, 39, 204, 376, 390, 433, 496, 520 |
| Fnu4HI | GCNGC | 1 cut(s) | 279 |
| FokI | GGATG | 2 cut(s) | 65, 540 |
| Fsp4HI | GCNGC | 1 cut(s) | 279 |
| FspBI | CTAG | 2 cut(s) | 77, 564 |
| GlaI | GCGC | 3 cut(s) | 75, 86, 467 |
| GluI | GCNGC | 1 cut(s) | 279 |
| HaeII | RGCGCY | 2 cut(s) | 77, 88 |
| HgaI | GACGC | 1 cut(s) | 15 |
| HhaI | GCGC | 3 cut(s) | 76, 87, 468 |
| Hin1I | GRCGYC | 1 cut(s) | 7 |
| Hin1II | CATG | 8 cut(s) | 16, 43, 208, 380, 394, 437, 500, 524 |
| Hin6I | GCGC | 3 cut(s) | 74, 85, 466 |
| HinP1I | GCGC | 3 cut(s) | 74, 85, 466 |
| HinfI | GANTC | 2 cut(s) | 104, 256 |
| Hpy166II | GTNNAC | 2 cut(s) | 221, 502 |
| Hpy188I | TCNGA | 2 cut(s) | 29, 184 |
| Hpy188III | TCNNGA | 2 cut(s) | 391, 434 |
| Hpy8I | GTNNAC | 2 cut(s) | 221, 502 |
| Hpy99I | CGWCG | 1 cut(s) | 9 |
| HpyAV | CCTTC | 2 cut(s) | 118, 277 |
| HpyCH4V | TGCA | 2 cut(s) | 56, 452 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 82, 295, 472 |
| HpyF3I | CTNAG | 1 cut(s) | 26 |
| Hsp92I | GRCGYC | 1 cut(s) | 7 |
| Hsp92II | CATG | 8 cut(s) | 16, 43, 208, 380, 394, 437, 500, 524 |
| HspAI | GCGC | 3 cut(s) | 74, 85, 466 |
| KpnI | GGTACC | 1 cut(s) | 481 |
| Kzo9I | GATC | 1 cut(s) | 45 |
| LguI | GCTCTTC | 2 cut(s) | 75, 195 |
| LmnI | GCTCC | 1 cut(s) | 472 |
| LpnPI | CCDG | 3 cut(s) | 77, 129, 306 |
| Lsp1109I | GCAGC | 1 cut(s) | 290 |
| LweI | GCATC | 1 cut(s) | 43 |
| MaeI | CTAG | 2 cut(s) | 77, 564 |
| MalI | GATC | 1 cut(s) | 47 |
| MbiI | CCGCTC | 1 cut(s) | 475 |
| MboI | GATC | 1 cut(s) | 45 |
| MboII | GAAGA | 4 cut(s) | 92, 182, 265, 406 |
| MluCI | AATT | 6 cut(s) | 178, 246, 327, 397, 403, 442 |
| MlyI | GAGTC | 1 cut(s) | 250 |
| MnlI | CCTC | 9 cut(s) | 119, 122, 204, 206, 237, 327, 430, 455, 517 |
| MroXI | GAANNNNTTC | 1 cut(s) | 189 |
| MseI | TTAA | 1 cut(s) | 339 |
| MslI | CAYNNNNRTG | 1 cut(s) | 389 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 82, 295, 472 |
| NdeII | GATC | 1 cut(s) | 45 |
| NlaIII | CATG | 8 cut(s) | 16, 43, 208, 380, 394, 437, 500, 524 |
| NlaIV | GGNNCC | 2 cut(s) | 421, 479 |
| NspI | RCATGY | 2 cut(s) | 43, 500 |
| PagI | TCATGA | 2 cut(s) | 390, 433 |
| PciI | ACATGT | 2 cut(s) | 39, 496 |
| PciSI | GCTCTTC | 2 cut(s) | 75, 195 |
| PdmI | GAANNNNTTC | 1 cut(s) | 189 |
| PfeI | GAWTC | 1 cut(s) | 104 |
| PkrI | GCNGC | 1 cut(s) | 280 |
| PleI | GAGTC | 1 cut(s) | 250 |
| PpsI | GAGTC | 1 cut(s) | 250 |
| PscI | ACATGT | 2 cut(s) | 39, 496 |
| PsiI | TTATAA | 2 cut(s) | 402, 447 |
| PspN4I | GGNNCC | 2 cut(s) | 421, 479 |
| RsaI | GTAC | 4 cut(s) | 38, 307, 479, 503 |
| RsaNI | GTAC | 4 cut(s) | 37, 306, 478, 502 |
| RseI | CAYNNNNRTG | 1 cut(s) | 389 |
| SapI | GCTCTTC | 2 cut(s) | 75, 195 |
| SaqAI | TTAA | 1 cut(s) | 339 |
| SatI | GCNGC | 1 cut(s) | 279 |
| Sau3AI | GATC | 1 cut(s) | 45 |
| SchI | GAGTC | 1 cut(s) | 250 |
| SfaNI | GCATC | 1 cut(s) | 43 |
| SfcI | CTRYAG | 1 cut(s) | 363 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 389 |
| Sse9I | AATT | 6 cut(s) | 178, 246, 327, 397, 403, 442 |
| SsiI | CCGC | 2 cut(s) | 475, 547 |
| SspI | AATATT | 1 cut(s) | 355 |
| SspMI | CTAG | 2 cut(s) | 77, 564 |
| TaqI | TCGA | 1 cut(s) | 44 |
| TasI | AATT | 6 cut(s) | 178, 246, 327, 397, 403, 442 |
| TatI | WGTACW | 1 cut(s) | 36 |
| TfiI | GAWTC | 1 cut(s) | 104 |
| Tru1I | TTAA | 1 cut(s) | 339 |
| Tru9I | TTAA | 1 cut(s) | 339 |
| TseI | GCWGC | 1 cut(s) | 278 |
| TspDTI | ATGAA | 2 cut(s) | 407, 422 |
| XceI | RCATGY | 2 cut(s) | 43, 500 |
| XmnI | GAANNNNTTC | 1 cut(s) | 189 |
| XspI | CTAG | 2 cut(s) | 77, 564 |