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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 372 |
| AccB1I | GGYRCC | 1 cut(s) | 548 |
| AccII | CGCG | 1 cut(s) | 648 |
| AccIII | TCCGGA | 1 cut(s) | 628 |
| AciI | CCGC | 2 cut(s) | 159, 340 |
| AclWI | GGATC | 1 cut(s) | 116 |
| AcsI | RAATTY | 1 cut(s) | 102 |
| AfaI | GTAC | 1 cut(s) | 363 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 64, 659 |
| AgsI | TTSAA | 2 cut(s) | 13, 167 |
| AluBI | AGCT | 4 cut(s) | 179, 220, 541, 563 |
| AluI | AGCT | 4 cut(s) | 179, 220, 541, 563 |
| Alw21I | GWGCWC | 2 cut(s) | 141, 222 |
| Alw26I | GTCTC | 1 cut(s) | 32 |
| AlwI | GGATC | 1 cut(s) | 116 |
| Aor13HI | TCCGGA | 1 cut(s) | 628 |
| ApeKI | GCWGC | 1 cut(s) | 277 |
| ApoI | RAATTY | 1 cut(s) | 102 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 384 |
| AspLEI | GCGC | 2 cut(s) | 50, 650 |
| AspS9I | GGNCC | 1 cut(s) | 247 |
| AvaII | GGWCC | 1 cut(s) | 247 |
| BanI | GGYRCC | 1 cut(s) | 548 |
| BanII | GRGCYC | 1 cut(s) | 222 |
| BbsI | GAAGAC | 1 cut(s) | 455 |
| Bbv12I | GWGCWC | 2 cut(s) | 141, 222 |
| BbvI | GCAGC | 1 cut(s) | 289 |
| BccI | CCATC | 4 cut(s) | 92, 122, 321, 397 |
| BciVI | GTATCC | 1 cut(s) | 47 |
| BcoDI | GTCTC | 1 cut(s) | 32 |
| BfaI | CTAG | 2 cut(s) | 35, 603 |
| BfmI | CTRYAG | 1 cut(s) | 640 |
| BfuI | GTATCC | 1 cut(s) | 47 |
| BisI | GCNGC | 2 cut(s) | 159, 278 |
| BlsI | GCNGC | 2 cut(s) | 160, 279 |
| Bme18I | GGWCC | 1 cut(s) | 247 |
| BmgT120I | GGNCC | 1 cut(s) | 247 |
| BmiI | GGNNCC | 3 cut(s) | 249, 550, 616 |
| BpiI | GAAGAC | 1 cut(s) | 455 |
| BpuEI | CTTGAG | 1 cut(s) | 257 |
| BsaJI | CCNNGG | 2 cut(s) | 609, 654 |
| BsaWI | WCCGGW | 1 cut(s) | 628 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 64, 659 |
| BseAI | TCCGGA | 1 cut(s) | 628 |
| BseDI | CCNNGG | 2 cut(s) | 609, 654 |
| BseGI | GGATG | 1 cut(s) | 114 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 64, 659 |
| BseXI | GCAGC | 1 cut(s) | 289 |
| Bsh1236I | CGCG | 1 cut(s) | 648 |
| BshNI | GGYRCC | 1 cut(s) | 548 |
| BsiHKAI | GWGCWC | 2 cut(s) | 141, 222 |
| BsiSI | CCGG | 1 cut(s) | 629 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 64, 659 |
| BsmAI | GTCTC | 1 cut(s) | 32 |
| BsmI | GAATGC | 1 cut(s) | 517 |
| Bsp1286I | GDGCHC | 2 cut(s) | 141, 222 |
| Bsp13I | TCCGGA | 1 cut(s) | 628 |
| Bsp143I | GATC | 1 cut(s) | 121 |
| BspACI | CCGC | 2 cut(s) | 159, 340 |
| BspEI | TCCGGA | 1 cut(s) | 628 |
| BspFNI | CGCG | 1 cut(s) | 648 |
| BspHI | TCATGA | 2 cut(s) | 195, 535 |
| BspLI | GGNNCC | 3 cut(s) | 249, 550, 616 |
| BspPI | GGATC | 1 cut(s) | 116 |
| BspT107I | GGYRCC | 1 cut(s) | 548 |
| BssECI | CCNNGG | 2 cut(s) | 609, 654 |
| BssMI | GATC | 1 cut(s) | 121 |
| BssT1I | CCWWGG | 1 cut(s) | 654 |
| Bst6I | CTCTTC | 1 cut(s) | 237 |
| BstDEI | CTNAG | 2 cut(s) | 489, 564 |
| BstDSI | CCRYGG | 1 cut(s) | 609 |
| BstF5I | GGATG | 1 cut(s) | 114 |
| BstFNI | CGCG | 1 cut(s) | 648 |
| BstHHI | GCGC | 2 cut(s) | 50, 650 |
| BstKTI | GATC | 1 cut(s) | 124 |
| BstMAI | GTCTC | 1 cut(s) | 32 |
| BstMBI | GATC | 1 cut(s) | 121 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 167, 176 |
| BstSFI | CTRYAG | 1 cut(s) | 640 |
| BstUI | CGCG | 1 cut(s) | 648 |
| BstV1I | GCAGC | 1 cut(s) | 289 |
| BstV2I | GAAGAC | 1 cut(s) | 455 |
| BstX2I | RGATCY | 1 cut(s) | 121 |
| BstYI | RGATCY | 1 cut(s) | 121 |
| BsuI | GTATCC | 1 cut(s) | 47 |
| BtgI | CCRYGG | 1 cut(s) | 609 |
| BtsCI | GGATG | 1 cut(s) | 114 |
| BtsIMutI | CAGTG | 1 cut(s) | 426 |
| CciI | TCATGA | 2 cut(s) | 195, 535 |
| CfoI | GCGC | 2 cut(s) | 50, 650 |
| Cfr13I | GGNCC | 1 cut(s) | 247 |
| Csp6I | GTAC | 1 cut(s) | 362 |
| CviAII | CATG | 5 cut(s) | 196, 208, 536, 553, 572 |
| CviJI | RGCY | 4 cut(s) | 179, 220, 541, 563 |
| CviKI_1 | RGCY | 4 cut(s) | 179, 220, 541, 563 |
| CviQI | GTAC | 1 cut(s) | 362 |
| DdeI | CTNAG | 2 cut(s) | 489, 564 |
| DpnI | GATC | 1 cut(s) | 123 |
| DpnII | GATC | 1 cut(s) | 121 |
| Eam1104I | CTCTTC | 1 cut(s) | 237 |
| EarI | CTCTTC | 1 cut(s) | 237 |
| Ecl136II | GAGCTC | 1 cut(s) | 220 |
| Eco130I | CCWWGG | 1 cut(s) | 654 |
| Eco24I | GRGCYC | 1 cut(s) | 222 |
| Eco47I | GGWCC | 1 cut(s) | 247 |
| Eco53kI | GAGCTC | 1 cut(s) | 220 |
| EcoICRI | GAGCTC | 1 cut(s) | 220 |
| EcoO109I | RGGNCCY | 1 cut(s) | 247 |
| EcoRI | GAATTC | 1 cut(s) | 102 |
| EcoT14I | CCWWGG | 1 cut(s) | 654 |
| EcoT38I | GRGCYC | 1 cut(s) | 222 |
| ErhI | CCWWGG | 1 cut(s) | 654 |
| FaeI | CATG | 5 cut(s) | 199, 211, 539, 556, 575 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 8, 40 |
| FatI | CATG | 5 cut(s) | 195, 207, 535, 552, 571 |
| Fnu4HI | GCNGC | 2 cut(s) | 159, 278 |
| FokI | GGATG | 1 cut(s) | 101 |
| FriOI | GRGCYC | 1 cut(s) | 222 |
| Fsp4HI | GCNGC | 2 cut(s) | 159, 278 |
| FspBI | CTAG | 2 cut(s) | 35, 603 |
| GlaI | GCGC | 2 cut(s) | 49, 649 |
| GluI | GCNGC | 2 cut(s) | 159, 278 |
| HapII | CCGG | 1 cut(s) | 629 |
| HhaI | GCGC | 2 cut(s) | 50, 650 |
| Hin1II | CATG | 5 cut(s) | 199, 211, 539, 556, 575 |
| Hin6I | GCGC | 2 cut(s) | 48, 648 |
| HinP1I | GCGC | 2 cut(s) | 48, 648 |
| HinfI | GANTC | 4 cut(s) | 299, 380, 451, 632 |
| HpaII | CCGG | 1 cut(s) | 629 |
| Hpy188I | TCNGA | 2 cut(s) | 132, 501 |
| Hpy188III | TCNNGA | 7 cut(s) | 107, 196, 296, 311, 536, 603, 629 |
| HpyAV | CCTTC | 2 cut(s) | 395, 472 |
| HpyCH4IV | ACGT | 3 cut(s) | 135, 520, 558 |
| HpyCH4V | TGCA | 1 cut(s) | 515 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 167, 176 |
| HpyF3I | CTNAG | 2 cut(s) | 489, 564 |
| HpySE526I | ACGT | 3 cut(s) | 135, 520, 558 |
| Hsp92II | CATG | 5 cut(s) | 199, 211, 539, 556, 575 |
| HspAI | GCGC | 2 cut(s) | 48, 648 |
| Kpn2I | TCCGGA | 1 cut(s) | 628 |
| Kzo9I | GATC | 1 cut(s) | 121 |
| LmnI | GCTCC | 1 cut(s) | 225 |
| LpnPI | CCDG | 7 cut(s) | 36, 46, 92, 265, 324, 501, 642 |
| Lsp1109I | GCAGC | 1 cut(s) | 289 |
| MaeI | CTAG | 2 cut(s) | 35, 603 |
| MaeII | ACGT | 3 cut(s) | 135, 520, 558 |
| MaeIII | GTNAC | 2 cut(s) | 5, 296 |
| MalI | GATC | 1 cut(s) | 123 |
| MboI | GATC | 1 cut(s) | 121 |
| MboII | GAAGA | 2 cut(s) | 254, 460 |
| MflI | RGATCY | 1 cut(s) | 121 |
| MhlI | GDGCHC | 2 cut(s) | 141, 222 |
| MluCI | AATT | 3 cut(s) | 102, 189, 493 |
| MlyI | GAGTC | 3 cut(s) | 293, 445, 641 |
| MnlI | CCTC | 4 cut(s) | 238, 245, 347, 653 |
| MroI | TCCGGA | 1 cut(s) | 628 |
| MroXI | GAANNNNTTC | 1 cut(s) | 384 |
| MseI | TTAA | 4 cut(s) | 20, 90, 147, 354 |
| MslI | CAYNNNNRTG | 2 cut(s) | 210, 431 |
| MspI | CCGG | 1 cut(s) | 629 |
| Mva1269I | GAATGC | 1 cut(s) | 517 |
| MvnI | CGCG | 1 cut(s) | 648 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 167, 176 |
| NdeII | GATC | 1 cut(s) | 121 |
| NlaIII | CATG | 5 cut(s) | 199, 211, 539, 556, 575 |
| NlaIV | GGNNCC | 3 cut(s) | 249, 550, 616 |
| NmuCI | GTSAC | 1 cut(s) | 296 |
| PagI | TCATGA | 2 cut(s) | 195, 535 |
| PctI | GAATGC | 1 cut(s) | 517 |
| PdmI | GAANNNNTTC | 1 cut(s) | 384 |
| PfeI | GAWTC | 1 cut(s) | 380 |
| PkrI | GCNGC | 2 cut(s) | 160, 279 |
| PleI | GAGTC | 3 cut(s) | 293, 445, 640 |
| PpsI | GAGTC | 3 cut(s) | 293, 445, 640 |
| PpuMI | RGGWCCY | 1 cut(s) | 247 |
| PsiI | TTATAA | 1 cut(s) | 372 |
| Psp124BI | GAGCTC | 1 cut(s) | 222 |
| Psp5II | RGGWCCY | 1 cut(s) | 247 |
| PspN4I | GGNNCC | 3 cut(s) | 249, 550, 616 |
| PspPI | GGNCC | 1 cut(s) | 247 |
| PspPPI | RGGWCCY | 1 cut(s) | 247 |
| PsuI | RGATCY | 1 cut(s) | 121 |
| RsaI | GTAC | 1 cut(s) | 363 |
| RsaNI | GTAC | 1 cut(s) | 362 |
| RseI | CAYNNNNRTG | 2 cut(s) | 210, 431 |
| SacI | GAGCTC | 1 cut(s) | 222 |
| SaqAI | TTAA | 4 cut(s) | 20, 90, 147, 354 |
| SatI | GCNGC | 2 cut(s) | 159, 278 |
| Sau3AI | GATC | 1 cut(s) | 121 |
| Sau96I | GGNCC | 1 cut(s) | 247 |
| SchI | GAGTC | 3 cut(s) | 293, 445, 641 |
| SduI | GDGCHC | 2 cut(s) | 141, 222 |
| SfcI | CTRYAG | 1 cut(s) | 640 |
| SinI | GGWCC | 1 cut(s) | 247 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 210, 431 |
| SmlI | CTYRAG | 1 cut(s) | 272 |
| SmoI | CTYRAG | 1 cut(s) | 272 |
| Sse9I | AATT | 3 cut(s) | 102, 189, 493 |
| SsiI | CCGC | 2 cut(s) | 159, 340 |
| SspMI | CTAG | 2 cut(s) | 35, 603 |
| SstI | GAGCTC | 1 cut(s) | 222 |
| StyI | CCWWGG | 1 cut(s) | 654 |
| TaiI | ACGT | 3 cut(s) | 138, 523, 561 |
| TasI | AATT | 3 cut(s) | 102, 189, 493 |
| TatI | WGTACW | 1 cut(s) | 361 |
| TauI | GCSGC | 1 cut(s) | 161 |
| TfiI | GAWTC | 1 cut(s) | 380 |
| Tru1I | TTAA | 4 cut(s) | 20, 90, 147, 354 |
| Tru9I | TTAA | 4 cut(s) | 20, 90, 147, 354 |
| TscAI | CASTG | 1 cut(s) | 433 |
| TseFI | GTSAC | 1 cut(s) | 296 |
| TseI | GCWGC | 1 cut(s) | 277 |
| Tsp45I | GTSAC | 1 cut(s) | 296 |
| TspDTI | ATGAA | 4 cut(s) | 224, 255, 524, 569 |
| TspRI | CASTG | 1 cut(s) | 433 |
| VpaK11BI | GGWCC | 1 cut(s) | 247 |
| XapI | RAATTY | 1 cut(s) | 102 |
| XbaI | TCTAGA | 1 cut(s) | 602 |
| XmnI | GAANNNNTTC | 1 cut(s) | 384 |
| XspI | CTAG | 2 cut(s) | 35, 603 |