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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 538 |
| AciI | CCGC | 1 cut(s) | 250 |
| AcsI | RAATTY | 1 cut(s) | 317 |
| AfaI | GTAC | 1 cut(s) | 137 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 569 |
| AgsI | TTSAA | 2 cut(s) | 55, 265 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 177, 209 |
| AluBI | AGCT | 6 cut(s) | 44, 50, 451, 461, 504, 532 |
| AluI | AGCT | 6 cut(s) | 44, 50, 451, 461, 504, 532 |
| Alw26I | GTCTC | 2 cut(s) | 181, 385 |
| Ama87I | CYCGRG | 1 cut(s) | 8 |
| Aor13HI | TCCGGA | 1 cut(s) | 538 |
| AoxI | GGCC | 1 cut(s) | 574 |
| ApoI | RAATTY | 1 cut(s) | 317 |
| AspS9I | GGNCC | 1 cut(s) | 574 |
| AvaI | CYCGRG | 1 cut(s) | 8 |
| BbsI | GAAGAC | 2 cut(s) | 162, 365 |
| BccI | CCATC | 3 cut(s) | 104, 231, 385 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 404, 438 |
| BcoDI | GTCTC | 2 cut(s) | 181, 385 |
| BfaI | CTAG | 2 cut(s) | 15, 227 |
| BfmI | CTRYAG | 1 cut(s) | 519 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 77 |
| BglII | AGATCT | 1 cut(s) | 515 |
| BmeT110I | CYCGRG | 1 cut(s) | 8 |
| BmgT120I | GGNCC | 1 cut(s) | 574 |
| BmiI | GGNNCC | 1 cut(s) | 575 |
| BmsI | GCATC | 1 cut(s) | 331 |
| BpiI | GAAGAC | 2 cut(s) | 162, 365 |
| BpmI | CTGGAG | 1 cut(s) | 116 |
| BpuEI | CTTGAG | 1 cut(s) | 30 |
| Bsa29I | ATCGAT | 1 cut(s) | 414 |
| BsaI | GGTCTC | 1 cut(s) | 181 |
| BsaWI | WCCGGW | 1 cut(s) | 538 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 569 |
| Bse1I | ACTGG | 1 cut(s) | 133 |
| BseAI | TCCGGA | 1 cut(s) | 538 |
| BseCI | ATCGAT | 1 cut(s) | 414 |
| BseGI | GGATG | 3 cut(s) | 99, 127, 489 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 569 |
| BseNI | ACTGG | 1 cut(s) | 133 |
| BshFI | GGCC | 1 cut(s) | 576 |
| BshVI | ATCGAT | 1 cut(s) | 414 |
| BsiHKCI | CYCGRG | 1 cut(s) | 8 |
| BsiSI | CCGG | 1 cut(s) | 539 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 569 |
| BsmAI | GTCTC | 2 cut(s) | 181, 385 |
| BsnI | GGCC | 1 cut(s) | 576 |
| Bso31I | GGTCTC | 1 cut(s) | 181 |
| BsoBI | CYCGRG | 1 cut(s) | 8 |
| Bsp13I | TCCGGA | 1 cut(s) | 538 |
| Bsp143I | GATC | 3 cut(s) | 333, 432, 515 |
| BspACI | CCGC | 1 cut(s) | 250 |
| BspANI | GGCC | 1 cut(s) | 576 |
| BspDI | ATCGAT | 1 cut(s) | 414 |
| BspEI | TCCGGA | 1 cut(s) | 538 |
| BspHI | TCATGA | 1 cut(s) | 445 |
| BspLI | GGNNCC | 1 cut(s) | 575 |
| BspQI | GCTCTTC | 1 cut(s) | 494 |
| BspTNI | GGTCTC | 1 cut(s) | 181 |
| BsrI | ACTGG | 1 cut(s) | 133 |
| BssMI | GATC | 3 cut(s) | 333, 432, 515 |
| Bst6I | CTCTTC | 1 cut(s) | 494 |
| BstC8I | GCNNGC | 1 cut(s) | 42 |
| BstDEI | CTNAG | 3 cut(s) | 73, 399, 564 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 567 |
| BstF5I | GGATG | 3 cut(s) | 99, 127, 489 |
| BstKTI | GATC | 3 cut(s) | 336, 435, 518 |
| BstMAI | GTCTC | 2 cut(s) | 181, 385 |
| BstMBI | GATC | 3 cut(s) | 333, 432, 515 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 56, 77, 86 |
| BstSFI | CTRYAG | 1 cut(s) | 519 |
| BstV2I | GAAGAC | 2 cut(s) | 162, 365 |
| BstX2I | RGATCY | 1 cut(s) | 515 |
| BstYI | RGATCY | 1 cut(s) | 515 |
| Bsu15I | ATCGAT | 1 cut(s) | 414 |
| BsuRI | GGCC | 1 cut(s) | 576 |
| BsuTUI | ATCGAT | 1 cut(s) | 414 |
| BtgZI | GCGATG | 1 cut(s) | 359 |
| BtsCI | GGATG | 3 cut(s) | 99, 127, 489 |
| Cac8I | GCNNGC | 1 cut(s) | 42 |
| CciI | TCATGA | 1 cut(s) | 445 |
| Cfr13I | GGNCC | 1 cut(s) | 574 |
| ClaI | ATCGAT | 1 cut(s) | 414 |
| Csp6I | GTAC | 1 cut(s) | 136 |
| CviAII | CATG | 3 cut(s) | 206, 446, 482 |
| CviQI | GTAC | 1 cut(s) | 136 |
| DdeI | CTNAG | 3 cut(s) | 73, 399, 564 |
| DpnI | GATC | 3 cut(s) | 335, 434, 517 |
| DpnII | GATC | 3 cut(s) | 333, 432, 515 |
| Eam1104I | CTCTTC | 1 cut(s) | 494 |
| EarI | CTCTTC | 1 cut(s) | 494 |
| Eco31I | GGTCTC | 1 cut(s) | 181 |
| Eco88I | CYCGRG | 1 cut(s) | 8 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 567 |
| EcoRI | GAATTC | 1 cut(s) | 317 |
| FaeI | CATG | 3 cut(s) | 209, 449, 485 |
| FatI | CATG | 3 cut(s) | 205, 445, 481 |
| FauNDI | CATATG | 1 cut(s) | 117 |
| FokI | GGATG | 3 cut(s) | 86, 134, 476 |
| FspBI | CTAG | 2 cut(s) | 15, 227 |
| GsuI | CTGGAG | 1 cut(s) | 116 |
| HaeIII | GGCC | 1 cut(s) | 576 |
| HapII | CCGG | 1 cut(s) | 539 |
| Hin1II | CATG | 3 cut(s) | 209, 449, 485 |
| HindIII | AAGCTT | 2 cut(s) | 48, 530 |
| HinfI | GANTC | 7 cut(s) | 4, 109, 125, 209, 361, 411, 542 |
| HpaII | CCGG | 1 cut(s) | 539 |
| Hpy188III | TCNNGA | 6 cut(s) | 8, 221, 275, 446, 513, 539 |
| HpyCH4IV | ACGT | 1 cut(s) | 201 |
| HpyCH4V | TGCA | 3 cut(s) | 300, 386, 425 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 56, 77, 86 |
| HpyF3I | CTNAG | 3 cut(s) | 73, 399, 564 |
| HpySE526I | ACGT | 1 cut(s) | 201 |
| Hsp92II | CATG | 3 cut(s) | 209, 449, 485 |
| Kpn2I | TCCGGA | 1 cut(s) | 538 |
| Kzo9I | GATC | 3 cut(s) | 333, 432, 515 |
| LguI | GCTCTTC | 1 cut(s) | 494 |
| LmnI | GCTCC | 1 cut(s) | 458 |
| LpnPI | CCDG | 6 cut(s) | 146, 227, 234, 390, 411, 552 |
| LweI | GCATC | 1 cut(s) | 331 |
| MaeI | CTAG | 2 cut(s) | 15, 227 |
| MaeII | ACGT | 1 cut(s) | 201 |
| MaeIII | GTNAC | 1 cut(s) | 554 |
| MalI | GATC | 3 cut(s) | 335, 434, 517 |
| MboI | GATC | 3 cut(s) | 333, 432, 515 |
| MboII | GAAGA | 6 cut(s) | 164, 167, 197, 364, 370, 511 |
| MflI | RGATCY | 1 cut(s) | 515 |
| MluCI | AATT | 3 cut(s) | 317, 508, 547 |
| MlyI | GAGTC | 3 cut(s) | 103, 203, 355 |
| MmeI | TCCRAC | 1 cut(s) | 436 |
| MnlI | CCTC | 3 cut(s) | 70, 257, 563 |
| MroI | TCCGGA | 1 cut(s) | 538 |
| MseI | TTAA | 1 cut(s) | 311 |
| MslI | CAYNNNNRTG | 3 cut(s) | 104, 120, 494 |
| MspI | CCGG | 1 cut(s) | 539 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 56, 77, 86 |
| NdeI | CATATG | 1 cut(s) | 117 |
| NdeII | GATC | 3 cut(s) | 333, 432, 515 |
| NlaIII | CATG | 3 cut(s) | 209, 449, 485 |
| NlaIV | GGNNCC | 1 cut(s) | 575 |
| NmuCI | GTSAC | 1 cut(s) | 554 |
| PaeR7I | CTCGAG | 1 cut(s) | 8 |
| PagI | TCATGA | 1 cut(s) | 445 |
| PciSI | GCTCTTC | 1 cut(s) | 494 |
| PfeI | GAWTC | 4 cut(s) | 4, 125, 411, 542 |
| PleI | GAGTC | 3 cut(s) | 103, 203, 355 |
| PpsI | GAGTC | 3 cut(s) | 103, 203, 355 |
| PspN4I | GGNNCC | 1 cut(s) | 575 |
| PspPI | GGNCC | 1 cut(s) | 574 |
| PsuI | RGATCY | 1 cut(s) | 515 |
| RsaI | GTAC | 1 cut(s) | 137 |
| RsaNI | GTAC | 1 cut(s) | 136 |
| RseI | CAYNNNNRTG | 3 cut(s) | 104, 120, 494 |
| SapI | GCTCTTC | 1 cut(s) | 494 |
| SaqAI | TTAA | 1 cut(s) | 311 |
| Sau3AI | GATC | 3 cut(s) | 333, 432, 515 |
| Sau96I | GGNCC | 1 cut(s) | 574 |
| SchI | GAGTC | 3 cut(s) | 103, 203, 355 |
| SetI | ASST | 9 cut(s) | 46, 52, 204, 228, 443, 453, 463, 506, 534 |
| SfaNI | GCATC | 1 cut(s) | 331 |
| SfcI | CTRYAG | 1 cut(s) | 519 |
| Sfr274I | CTCGAG | 1 cut(s) | 8 |
| SlaI | CTCGAG | 1 cut(s) | 8 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 104, 120, 494 |
| SmlI | CTYRAG | 2 cut(s) | 8, 45 |
| SmoI | CTYRAG | 2 cut(s) | 8, 45 |
| Sse9I | AATT | 3 cut(s) | 317, 508, 547 |
| SsiI | CCGC | 1 cut(s) | 250 |
| SspMI | CTAG | 2 cut(s) | 15, 227 |
| TaiI | ACGT | 1 cut(s) | 204 |
| TaqI | TCGA | 5 cut(s) | 9, 183, 409, 414, 512 |
| TasI | AATT | 3 cut(s) | 317, 508, 547 |
| TfiI | GAWTC | 4 cut(s) | 4, 125, 411, 542 |
| Tru1I | TTAA | 1 cut(s) | 311 |
| Tru9I | TTAA | 1 cut(s) | 311 |
| TseFI | GTSAC | 1 cut(s) | 554 |
| Tsp45I | GTSAC | 1 cut(s) | 554 |
| TspDTI | ATGAA | 4 cut(s) | 161, 165, 434, 479 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 567 |
| XapI | RAATTY | 1 cut(s) | 317 |
| XhoI | CTCGAG | 1 cut(s) | 8 |
| XspI | CTAG | 2 cut(s) | 15, 227 |