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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 585, 630 |
| Acc65I | GGTACC | 1 cut(s) | 660 |
| AccB1I | GGYRCC | 2 cut(s) | 121, 660 |
| AccBSI | CCGCTC | 1 cut(s) | 658 |
| AciI | CCGC | 1 cut(s) | 658 |
| AclWI | GGATC | 2 cut(s) | 141, 518 |
| AcsI | RAATTY | 1 cut(s) | 102 |
| AcuI | CTGAAG | 1 cut(s) | 513 |
| AcyI | GRCGYC | 1 cut(s) | 190 |
| AfaI | GTAC | 2 cut(s) | 490, 662 |
| AfeI | AGCGCT | 2 cut(s) | 258, 269 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 64, 393, 644, 645, 671 |
| AgsI | TTSAA | 6 cut(s) | 96, 145, 307, 314, 343, 591 |
| AjnI | CCWGG | 1 cut(s) | 117 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 255, 287 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 125, 157 |
| AluBI | AGCT | 4 cut(s) | 371, 427, 529, 551 |
| AluI | AGCT | 4 cut(s) | 371, 427, 529, 551 |
| AlwI | GGATC | 2 cut(s) | 141, 518 |
| Ama87I | CYCGRG | 1 cut(s) | 49 |
| Aor51HI | AGCGCT | 2 cut(s) | 258, 269 |
| AoxI | GGCC | 2 cut(s) | 593, 694 |
| ApaI | GGGCCC | 1 cut(s) | 698 |
| ApoI | RAATTY | 1 cut(s) | 102 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 329, 361 |
| AseI | ATTAAT | 1 cut(s) | 534 |
| Asp718I | GGTACC | 1 cut(s) | 660 |
| AspLEI | GCGC | 3 cut(s) | 259, 270, 651 |
| AspS9I | GGNCC | 3 cut(s) | 594, 694, 695 |
| AsuC2I | CCSGG | 1 cut(s) | 131 |
| AvaI | CYCGRG | 1 cut(s) | 49 |
| BaeGI | GKGCMC | 1 cut(s) | 698 |
| BanI | GGYRCC | 2 cut(s) | 121, 660 |
| BanII | GRGCYC | 1 cut(s) | 698 |
| BauI | CACGAG | 1 cut(s) | 572 |
| BccI | CCATC | 2 cut(s) | 93, 531 |
| BciT130I | CCWGG | 1 cut(s) | 119 |
| BcnI | CCSGG | 1 cut(s) | 131 |
| BfaI | CTAG | 2 cut(s) | 260, 715 |
| BfmI | CTRYAG | 1 cut(s) | 546 |
| BfoI | RGCGCY | 2 cut(s) | 260, 271 |
| Bme1390I | CCNGG | 2 cut(s) | 119, 131 |
| BmeT110I | CYCGRG | 1 cut(s) | 49 |
| BmgT120I | GGNCC | 3 cut(s) | 594, 694, 695 |
| BmiI | GGNNCC | 4 cut(s) | 123, 521, 662, 696 |
| BmrFI | CCNGG | 2 cut(s) | 119, 131 |
| BmsI | GCATC | 2 cut(s) | 174, 226 |
| BpuEI | CTTGAG | 1 cut(s) | 153 |
| BpuMI | CCSGG | 1 cut(s) | 131 |
| BsaHI | GRCGYC | 1 cut(s) | 190 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 209, 239 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 64, 393, 644, 645, 671 |
| Bse3DI | GCAATG | 1 cut(s) | 283 |
| BseBI | CCWGG | 1 cut(s) | 119 |
| BseGI | GGATG | 1 cut(s) | 241 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 64, 393, 644, 645, 671 |
| BseMI | GCAATG | 1 cut(s) | 283 |
| BseMII | CTCAG | 2 cut(s) | 223, 543 |
| BseRI | GAGGAG | 1 cut(s) | 284 |
| BseSI | GKGCMC | 1 cut(s) | 698 |
| BshFI | GGCC | 2 cut(s) | 595, 696 |
| BshNI | GGYRCC | 2 cut(s) | 121, 660 |
| BsiHKCI | CYCGRG | 1 cut(s) | 49 |
| BsiSI | CCGG | 1 cut(s) | 131 |
| BslFI | GGGAC | 2 cut(s) | 690, 699 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 64, 393, 644, 645, 671 |
| BsmFI | GGGAC | 2 cut(s) | 690, 699 |
| BsnI | GGCC | 2 cut(s) | 595, 696 |
| BsoBI | CYCGRG | 1 cut(s) | 49 |
| Bsp120I | GGGCCC | 1 cut(s) | 694 |
| Bsp1286I | GDGCHC | 1 cut(s) | 698 |
| Bsp143I | GATC | 3 cut(s) | 133, 228, 510 |
| BspACI | CCGC | 1 cut(s) | 658 |
| BspANI | GGCC | 2 cut(s) | 595, 696 |
| BspCNI | CTCAG | 2 cut(s) | 222, 544 |
| BspHI | TCATGA | 1 cut(s) | 616 |
| BspLI | GGNNCC | 4 cut(s) | 123, 521, 662, 696 |
| BspPI | GGATC | 2 cut(s) | 141, 518 |
| BspQI | GCTCTTC | 1 cut(s) | 258 |
| BspT107I | GGYRCC | 2 cut(s) | 121, 660 |
| BsrBI | CCGCTC | 1 cut(s) | 658 |
| BsrDI | GCAATG | 1 cut(s) | 283 |
| BssMI | GATC | 3 cut(s) | 133, 228, 510 |
| BssNI | GRCGYC | 1 cut(s) | 190 |
| BssSI | CACGAG | 1 cut(s) | 572 |
| Bst2BI | CACGAG | 1 cut(s) | 572 |
| Bst2UI | CCWGG | 1 cut(s) | 119 |
| Bst4CI | ACNGT | 3 cut(s) | 62, 384, 488 |
| Bst6I | CTCTTC | 1 cut(s) | 258 |
| BstACI | GRCGYC | 1 cut(s) | 190 |
| BstC8I | GCNNGC | 1 cut(s) | 165 |
| BstDEI | CTNAG | 5 cut(s) | 14, 209, 552, 606, 666 |
| BstEII | GGTNACC | 2 cut(s) | 53, 67 |
| BstF5I | GGATG | 1 cut(s) | 241 |
| BstH2I | RGCGCY | 2 cut(s) | 260, 271 |
| BstHHI | GCGC | 3 cut(s) | 259, 270, 651 |
| BstKTI | GATC | 3 cut(s) | 136, 231, 513 |
| BstMBI | GATC | 3 cut(s) | 133, 228, 510 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 265, 655 |
| BstNI | CCWGG | 1 cut(s) | 119 |
| BstNSI | RCATGY | 1 cut(s) | 167 |
| BstPI | GGTNACC | 2 cut(s) | 53, 67 |
| BstSCI | CCNGG | 2 cut(s) | 117, 129 |
| BstSFI | CTRYAG | 1 cut(s) | 546 |
| BstSLI | GKGCMC | 1 cut(s) | 698 |
| BstX2I | RGATCY | 1 cut(s) | 133 |
| BstYI | RGATCY | 1 cut(s) | 133 |
| BsuRI | GGCC | 2 cut(s) | 595, 696 |
| BtsCI | GGATG | 1 cut(s) | 241 |
| Cac8I | GCNNGC | 1 cut(s) | 165 |
| CciI | TCATGA | 1 cut(s) | 616 |
| CfoI | GCGC | 3 cut(s) | 259, 270, 651 |
| Cfr13I | GGNCC | 3 cut(s) | 594, 694, 695 |
| CseI | GACGC | 1 cut(s) | 198 |
| Csp6I | GTAC | 2 cut(s) | 489, 661 |
| CviAII | CATG | 6 cut(s) | 31, 164, 388, 560, 617, 680 |
| CviJI | RGCY | 8 cut(s) | 48, 371, 427, 464, 529, 551, 595, 696 |
| CviKI_1 | RGCY | 8 cut(s) | 48, 371, 427, 464, 529, 551, 595, 696 |
| CviQI | GTAC | 2 cut(s) | 489, 661 |
| DdeI | CTNAG | 5 cut(s) | 14, 209, 552, 606, 666 |
| DpnI | GATC | 3 cut(s) | 135, 230, 512 |
| DpnII | GATC | 3 cut(s) | 133, 228, 510 |
| Eam1104I | CTCTTC | 1 cut(s) | 258 |
| EarI | CTCTTC | 1 cut(s) | 258 |
| Eco24I | GRGCYC | 1 cut(s) | 698 |
| Eco47III | AGCGCT | 2 cut(s) | 258, 269 |
| Eco57I | CTGAAG | 1 cut(s) | 513 |
| Eco88I | CYCGRG | 1 cut(s) | 49 |
| Eco91I | GGTNACC | 2 cut(s) | 53, 67 |
| EcoO65I | GGTNACC | 2 cut(s) | 53, 67 |
| EcoRII | CCWGG | 1 cut(s) | 117 |
| EcoT38I | GRGCYC | 1 cut(s) | 698 |
| FaeI | CATG | 6 cut(s) | 34, 167, 391, 563, 620, 683 |
| FaqI | GGGAC | 2 cut(s) | 690, 699 |
| FatI | CATG | 6 cut(s) | 30, 163, 387, 559, 616, 679 |
| FauNDI | CATATG | 1 cut(s) | 195 |
| FokI | GGATG | 1 cut(s) | 248 |
| FriOI | GRGCYC | 1 cut(s) | 698 |
| FspBI | CTAG | 2 cut(s) | 260, 715 |
| GlaI | GCGC | 3 cut(s) | 258, 269, 650 |
| HaeII | RGCGCY | 2 cut(s) | 260, 271 |
| HaeIII | GGCC | 2 cut(s) | 595, 696 |
| HapII | CCGG | 1 cut(s) | 131 |
| HgaI | GACGC | 1 cut(s) | 198 |
| HhaI | GCGC | 3 cut(s) | 259, 270, 651 |
| Hin1I | GRCGYC | 1 cut(s) | 190 |
| Hin1II | CATG | 6 cut(s) | 34, 167, 391, 563, 620, 683 |
| Hin6I | GCGC | 3 cut(s) | 257, 268, 649 |
| HinP1I | GCGC | 3 cut(s) | 257, 268, 649 |
| HinfI | GANTC | 3 cut(s) | 18, 38, 287 |
| HpaII | CCGG | 1 cut(s) | 131 |
| Hpy166II | GTNNAC | 1 cut(s) | 404 |
| Hpy188I | TCNGA | 2 cut(s) | 212, 367 |
| Hpy188III | TCNNGA | 3 cut(s) | 181, 574, 617 |
| Hpy8I | GTNNAC | 1 cut(s) | 404 |
| Hpy99I | CGWCG | 1 cut(s) | 192 |
| HpyAV | CCTTC | 2 cut(s) | 301, 460 |
| HpyCH4III | ACNGT | 3 cut(s) | 62, 384, 488 |
| HpyCH4V | TGCA | 3 cut(s) | 239, 378, 635 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 265, 655 |
| HpyF3I | CTNAG | 5 cut(s) | 14, 209, 552, 606, 666 |
| Hsp92I | GRCGYC | 1 cut(s) | 190 |
| Hsp92II | CATG | 6 cut(s) | 34, 167, 391, 563, 620, 683 |
| HspAI | GCGC | 3 cut(s) | 257, 268, 649 |
| KpnI | GGTACC | 1 cut(s) | 664 |
| Kzo9I | GATC | 3 cut(s) | 133, 228, 510 |
| LguI | GCTCTTC | 1 cut(s) | 258 |
| LpnPI | CCDG | 6 cut(s) | 30, 104, 131, 144, 312, 489 |
| LweI | GCATC | 2 cut(s) | 174, 226 |
| MaeI | CTAG | 2 cut(s) | 260, 715 |
| MaeIII | GTNAC | 2 cut(s) | 53, 67 |
| MalI | GATC | 3 cut(s) | 135, 230, 512 |
| MbiI | CCGCTC | 1 cut(s) | 658 |
| MboI | GATC | 3 cut(s) | 133, 228, 510 |
| MboII | GAAGA | 1 cut(s) | 275 |
| MflI | RGATCY | 1 cut(s) | 133 |
| MhlI | GDGCHC | 1 cut(s) | 698 |
| MluCI | AATT | 6 cut(s) | 102, 361, 429, 580, 586, 625 |
| MlyI | GAGTC | 2 cut(s) | 12, 32 |
| MnlI | CCTC | 7 cut(s) | 302, 305, 387, 570, 613, 638, 676 |
| MseI | TTAA | 1 cut(s) | 534 |
| MslI | CAYNNNNRTG | 1 cut(s) | 572 |
| MspI | CCGG | 1 cut(s) | 131 |
| MspR9I | CCNGG | 2 cut(s) | 119, 131 |
| MvaI | CCWGG | 1 cut(s) | 119 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 265, 655 |
| NciI | CCSGG | 1 cut(s) | 131 |
| NdeI | CATATG | 1 cut(s) | 195 |
| NdeII | GATC | 3 cut(s) | 133, 228, 510 |
| NlaIII | CATG | 6 cut(s) | 34, 167, 391, 563, 620, 683 |
| NlaIV | GGNNCC | 4 cut(s) | 123, 521, 662, 696 |
| NspI | RCATGY | 1 cut(s) | 167 |
| PaeI | GCATGC | 1 cut(s) | 167 |
| PagI | TCATGA | 1 cut(s) | 616 |
| PciSI | GCTCTTC | 1 cut(s) | 258 |
| PfeI | GAWTC | 1 cut(s) | 287 |
| PleI | GAGTC | 2 cut(s) | 12, 32 |
| PpsI | GAGTC | 2 cut(s) | 12, 32 |
| PshBI | ATTAAT | 1 cut(s) | 534 |
| PsiI | TTATAA | 2 cut(s) | 585, 630 |
| Psp6I | CCWGG | 1 cut(s) | 117 |
| PspEI | GGTNACC | 2 cut(s) | 53, 67 |
| PspGI | CCWGG | 1 cut(s) | 117 |
| PspN4I | GGNNCC | 4 cut(s) | 123, 521, 662, 696 |
| PspOMI | GGGCCC | 1 cut(s) | 694 |
| PspPI | GGNCC | 3 cut(s) | 594, 694, 695 |
| PsuI | RGATCY | 1 cut(s) | 133 |
| RsaI | GTAC | 2 cut(s) | 490, 662 |
| RsaNI | GTAC | 2 cut(s) | 489, 661 |
| RseI | CAYNNNNRTG | 1 cut(s) | 572 |
| SapI | GCTCTTC | 1 cut(s) | 258 |
| SaqAI | TTAA | 1 cut(s) | 534 |
| Sau3AI | GATC | 3 cut(s) | 133, 228, 510 |
| Sau96I | GGNCC | 3 cut(s) | 594, 694, 695 |
| SchI | GAGTC | 2 cut(s) | 12, 32 |
| ScrFI | CCNGG | 2 cut(s) | 119, 131 |
| SduI | GDGCHC | 1 cut(s) | 698 |
| SfaNI | GCATC | 2 cut(s) | 174, 226 |
| SfcI | CTRYAG | 1 cut(s) | 546 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 572 |
| SmlI | CTYRAG | 1 cut(s) | 168 |
| SmoI | CTYRAG | 1 cut(s) | 168 |
| SphI | GCATGC | 1 cut(s) | 167 |
| Sse9I | AATT | 6 cut(s) | 102, 361, 429, 580, 586, 625 |
| SsiI | CCGC | 1 cut(s) | 658 |
| SspI | AATATT | 1 cut(s) | 538 |
| SspMI | CTAG | 2 cut(s) | 260, 715 |
| StyD4I | CCNGG | 2 cut(s) | 117, 129 |
| TaaI | ACNGT | 3 cut(s) | 62, 384, 488 |
| TaqI | TCGA | 3 cut(s) | 5, 21, 227 |
| TasI | AATT | 6 cut(s) | 102, 361, 429, 580, 586, 625 |
| TfiI | GAWTC | 1 cut(s) | 287 |
| Tru1I | TTAA | 1 cut(s) | 534 |
| Tru9I | TTAA | 1 cut(s) | 534 |
| TspDTI | ATGAA | 2 cut(s) | 24, 605 |
| TspGWI | ACGGA | 1 cut(s) | 523 |
| VspI | ATTAAT | 1 cut(s) | 534 |
| XapI | RAATTY | 1 cut(s) | 102 |
| XceI | RCATGY | 1 cut(s) | 167 |
| XspI | CTAG | 2 cut(s) | 260, 715 |