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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 121 |
| AcsI | RAATTY | 1 cut(s) | 667 |
| AfaI | GTAC | 2 cut(s) | 248, 405 |
| AgsI | TTSAA | 2 cut(s) | 376, 587 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AleI | CACNNNNGTG | 2 cut(s) | 366, 452 |
| AluBI | AGCT | 3 cut(s) | 155, 562, 616 |
| AluI | AGCT | 3 cut(s) | 155, 562, 616 |
| Alw21I | GWGCWC | 1 cut(s) | 564 |
| Alw26I | GTCTC | 3 cut(s) | 182, 292, 496 |
| ApoI | RAATTY | 1 cut(s) | 667 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 405 |
| AsuC2I | CCSGG | 1 cut(s) | 107 |
| BanII | GRGCYC | 1 cut(s) | 564 |
| BbsI | GAAGAC | 1 cut(s) | 273 |
| Bbv12I | GWGCWC | 1 cut(s) | 564 |
| BccI | CCATC | 3 cut(s) | 342, 496, 534 |
| BceAI | ACGGC | 1 cut(s) | 191 |
| BcnI | CCSGG | 1 cut(s) | 107 |
| BcoDI | GTCTC | 3 cut(s) | 182, 292, 496 |
| BfaI | CTAG | 2 cut(s) | 126, 338 |
| BfmI | CTRYAG | 1 cut(s) | 534 |
| BmcAI | AGTACT | 1 cut(s) | 405 |
| Bme1390I | CCNGG | 1 cut(s) | 107 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmiI | GGNNCC | 1 cut(s) | 571 |
| BmrFI | CCNGG | 1 cut(s) | 107 |
| BmrI | ACTGGG | 1 cut(s) | 44 |
| BmuI | ACTGGG | 1 cut(s) | 44 |
| BpiI | GAAGAC | 1 cut(s) | 273 |
| BpmI | CTGGAG | 1 cut(s) | 227 |
| BpuEI | CTTGAG | 2 cut(s) | 74, 140 |
| BpuMI | CCSGG | 1 cut(s) | 107 |
| Bsa29I | ATCGAT | 1 cut(s) | 525 |
| BsaI | GGTCTC | 1 cut(s) | 292 |
| BsaJI | CCNNGG | 1 cut(s) | 183 |
| Bse1I | ACTGG | 2 cut(s) | 39, 244 |
| Bse3DI | GCAATG | 1 cut(s) | 316 |
| BseCI | ATCGAT | 1 cut(s) | 525 |
| BseDI | CCNNGG | 1 cut(s) | 183 |
| BseGI | GGATG | 5 cut(s) | 210, 238, 545, 549, 654 |
| BseMI | GCAATG | 1 cut(s) | 316 |
| BseNI | ACTGG | 2 cut(s) | 39, 244 |
| BshVI | ATCGAT | 1 cut(s) | 525 |
| BsiHKAI | GWGCWC | 1 cut(s) | 564 |
| BsiSI | CCGG | 1 cut(s) | 106 |
| BslFI | GGGAC | 1 cut(s) | 52 |
| BsmAI | GTCTC | 3 cut(s) | 182, 292, 496 |
| BsmBI | CGTCTC | 1 cut(s) | 496 |
| BsmFI | GGGAC | 1 cut(s) | 52 |
| Bso31I | GGTCTC | 1 cut(s) | 292 |
| Bsp1286I | GDGCHC | 1 cut(s) | 564 |
| Bsp143I | GATC | 1 cut(s) | 334 |
| BspDI | ATCGAT | 1 cut(s) | 525 |
| BspHI | TCATGA | 2 cut(s) | 70, 556 |
| BspLI | GGNNCC | 1 cut(s) | 571 |
| BspTNI | GGTCTC | 1 cut(s) | 292 |
| BsrDI | GCAATG | 1 cut(s) | 316 |
| BsrI | ACTGG | 2 cut(s) | 39, 244 |
| BssECI | CCNNGG | 1 cut(s) | 183 |
| BssMI | GATC | 1 cut(s) | 334 |
| BssT1I | CCWWGG | 1 cut(s) | 183 |
| Bst4CI | ACNGT | 2 cut(s) | 535, 580 |
| Bst6I | CTCTTC | 1 cut(s) | 647 |
| BstC8I | GCNNGC | 1 cut(s) | 153 |
| BstDEI | CTNAG | 1 cut(s) | 711 |
| BstF5I | GGATG | 5 cut(s) | 210, 238, 545, 549, 654 |
| BstKTI | GATC | 1 cut(s) | 337 |
| BstMAI | GTCTC | 3 cut(s) | 182, 292, 496 |
| BstMBI | GATC | 1 cut(s) | 334 |
| BstSCI | CCNGG | 1 cut(s) | 105 |
| BstSFI | CTRYAG | 1 cut(s) | 534 |
| BstV2I | GAAGAC | 1 cut(s) | 273 |
| Bsu15I | ATCGAT | 1 cut(s) | 525 |
| BsuTUI | ATCGAT | 1 cut(s) | 525 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 5 cut(s) | 210, 238, 545, 549, 654 |
| BtsIMutI | CAGTG | 1 cut(s) | 32 |
| Cac8I | GCNNGC | 1 cut(s) | 153 |
| CciI | TCATGA | 2 cut(s) | 70, 556 |
| ClaI | ATCGAT | 1 cut(s) | 525 |
| Csp6I | GTAC | 2 cut(s) | 247, 404 |
| CviAII | CATG | 5 cut(s) | 71, 557, 574, 593, 637 |
| CviJI | RGCY | 8 cut(s) | 48, 155, 182, 206, 280, 562, 572, 616 |
| CviKI_1 | RGCY | 8 cut(s) | 48, 155, 182, 206, 280, 562, 572, 616 |
| CviQI | GTAC | 2 cut(s) | 247, 404 |
| DdeI | CTNAG | 1 cut(s) | 711 |
| DpnI | GATC | 1 cut(s) | 336 |
| DpnII | GATC | 1 cut(s) | 334 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 121 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 121 |
| Eam1104I | CTCTTC | 1 cut(s) | 647 |
| EarI | CTCTTC | 1 cut(s) | 647 |
| Ecl136II | GAGCTC | 1 cut(s) | 562 |
| Eco130I | CCWWGG | 1 cut(s) | 183 |
| Eco24I | GRGCYC | 1 cut(s) | 564 |
| Eco31I | GGTCTC | 1 cut(s) | 292 |
| Eco32I | GATATC | 1 cut(s) | 445 |
| Eco53kI | GAGCTC | 1 cut(s) | 562 |
| EcoICRI | GAGCTC | 1 cut(s) | 562 |
| EcoRI | GAATTC | 1 cut(s) | 667 |
| EcoRV | GATATC | 1 cut(s) | 445 |
| EcoT14I | CCWWGG | 1 cut(s) | 183 |
| EcoT38I | GRGCYC | 1 cut(s) | 564 |
| ErhI | CCWWGG | 1 cut(s) | 183 |
| Esp3I | CGTCTC | 1 cut(s) | 496 |
| FaeI | CATG | 5 cut(s) | 74, 560, 577, 596, 640 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 656, 688 |
| FaqI | GGGAC | 1 cut(s) | 52 |
| FatI | CATG | 5 cut(s) | 70, 556, 573, 592, 636 |
| FauNDI | CATATG | 1 cut(s) | 228 |
| FokI | GGATG | 5 cut(s) | 197, 245, 552, 556, 661 |
| FriOI | GRGCYC | 1 cut(s) | 564 |
| FspBI | CTAG | 2 cut(s) | 126, 338 |
| GsuI | CTGGAG | 1 cut(s) | 227 |
| HapII | CCGG | 1 cut(s) | 106 |
| Hin1II | CATG | 5 cut(s) | 74, 560, 577, 596, 640 |
| HincII | GTYRAC | 1 cut(s) | 627 |
| HindII | GTYRAC | 1 cut(s) | 627 |
| HpaII | CCGG | 1 cut(s) | 106 |
| Hpy166II | GTNNAC | 1 cut(s) | 627 |
| Hpy188I | TCNGA | 3 cut(s) | 133, 258, 400 |
| Hpy188III | TCNNGA | 5 cut(s) | 71, 119, 332, 338, 557 |
| Hpy8I | GTNNAC | 1 cut(s) | 627 |
| HpyAV | CCTTC | 3 cut(s) | 92, 270, 493 |
| HpyCH4III | ACNGT | 2 cut(s) | 535, 580 |
| HpyCH4IV | ACGT | 1 cut(s) | 135 |
| HpyCH4V | TGCA | 1 cut(s) | 677 |
| HpyF3I | CTNAG | 1 cut(s) | 711 |
| HpySE526I | ACGT | 1 cut(s) | 135 |
| Hsp92II | CATG | 5 cut(s) | 74, 560, 577, 596, 640 |
| Kzo9I | GATC | 1 cut(s) | 334 |
| LmnI | GCTCC | 3 cut(s) | 34, 246, 569 |
| LpnPI | CCDG | 7 cut(s) | 20, 23, 36, 119, 257, 286, 345 |
| MaeI | CTAG | 2 cut(s) | 126, 338 |
| MaeII | ACGT | 1 cut(s) | 135 |
| MaeIII | GTNAC | 2 cut(s) | 317, 529 |
| MalI | GATC | 1 cut(s) | 336 |
| MboI | GATC | 1 cut(s) | 334 |
| MboII | GAAGA | 3 cut(s) | 275, 278, 664 |
| MfeI | CAATTG | 1 cut(s) | 42 |
| MhlI | GDGCHC | 1 cut(s) | 564 |
| MluCI | AATT | 4 cut(s) | 17, 42, 428, 667 |
| MlyI | GAGTC | 3 cut(s) | 109, 131, 632 |
| MnlI | CCTC | 2 cut(s) | 462, 693 |
| MroXI | GAANNNNTTC | 1 cut(s) | 405 |
| MseI | TTAA | 2 cut(s) | 414, 422 |
| MslI | CAYNNNNRTG | 4 cut(s) | 215, 231, 366, 452 |
| MspI | CCGG | 1 cut(s) | 106 |
| MspR9I | CCNGG | 1 cut(s) | 107 |
| MunI | CAATTG | 1 cut(s) | 42 |
| NciI | CCSGG | 1 cut(s) | 107 |
| NdeI | CATATG | 1 cut(s) | 228 |
| NdeII | GATC | 1 cut(s) | 334 |
| NlaIII | CATG | 5 cut(s) | 74, 560, 577, 596, 640 |
| NlaIV | GGNNCC | 1 cut(s) | 571 |
| NmuCI | GTSAC | 1 cut(s) | 317 |
| OliI | CACNNNNGTG | 2 cut(s) | 366, 452 |
| PagI | TCATGA | 2 cut(s) | 70, 556 |
| PdmI | GAANNNNTTC | 1 cut(s) | 405 |
| PfeI | GAWTC | 8 cut(s) | 67, 102, 110, 236, 472, 522, 604, 632 |
| PfoI | TCCNGGA | 1 cut(s) | 105 |
| PleI | GAGTC | 3 cut(s) | 109, 130, 631 |
| PpsI | GAGTC | 3 cut(s) | 109, 130, 631 |
| Psp124BI | GAGCTC | 1 cut(s) | 564 |
| PspN4I | GGNNCC | 1 cut(s) | 571 |
| RsaI | GTAC | 2 cut(s) | 248, 405 |
| RsaNI | GTAC | 2 cut(s) | 247, 404 |
| RseI | CAYNNNNRTG | 4 cut(s) | 215, 231, 366, 452 |
| SacI | GAGCTC | 1 cut(s) | 564 |
| SaqAI | TTAA | 2 cut(s) | 414, 422 |
| Sau3AI | GATC | 1 cut(s) | 334 |
| ScaI | AGTACT | 1 cut(s) | 405 |
| SchI | GAGTC | 3 cut(s) | 109, 131, 632 |
| ScrFI | CCNGG | 1 cut(s) | 107 |
| SduI | GDGCHC | 1 cut(s) | 564 |
| SfcI | CTRYAG | 1 cut(s) | 534 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 215, 231, 366, 452 |
| SmlI | CTYRAG | 2 cut(s) | 89, 119 |
| SmoI | CTYRAG | 2 cut(s) | 89, 119 |
| Sse9I | AATT | 4 cut(s) | 17, 42, 428, 667 |
| SspMI | CTAG | 2 cut(s) | 126, 338 |
| SstI | GAGCTC | 1 cut(s) | 564 |
| StyD4I | CCNGG | 1 cut(s) | 105 |
| StyI | CCWWGG | 1 cut(s) | 183 |
| TaaI | ACNGT | 2 cut(s) | 535, 580 |
| TaiI | ACGT | 1 cut(s) | 138 |
| TaqI | TCGA | 6 cut(s) | 96, 113, 520, 525, 602, 621 |
| TasI | AATT | 4 cut(s) | 17, 42, 428, 667 |
| TatI | WGTACW | 1 cut(s) | 403 |
| TfiI | GAWTC | 8 cut(s) | 67, 102, 110, 236, 472, 522, 604, 632 |
| Tru1I | TTAA | 2 cut(s) | 414, 422 |
| Tru9I | TTAA | 2 cut(s) | 414, 422 |
| TscAI | CASTG | 1 cut(s) | 39 |
| TseFI | GTSAC | 1 cut(s) | 317 |
| Tsp45I | GTSAC | 1 cut(s) | 317 |
| TspDTI | ATGAA | 5 cut(s) | 17, 59, 276, 545, 665 |
| TspGWI | ACGGA | 4 cut(s) | 305, 644, 661, 674 |
| TspRI | CASTG | 1 cut(s) | 39 |
| XapI | RAATTY | 1 cut(s) | 667 |
| XbaI | TCTAGA | 1 cut(s) | 337 |
| XmnI | GAANNNNTTC | 1 cut(s) | 405 |
| XspI | CTAG | 2 cut(s) | 126, 338 |
| ZrmI | AGTACT | 1 cut(s) | 405 |