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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 474 |
| AccB1I | GGYRCC | 1 cut(s) | 587 |
| AccII | CGCG | 1 cut(s) | 414 |
| AciI | CCGC | 2 cut(s) | 106, 417 |
| AclWI | GGATC | 2 cut(s) | 38, 296 |
| AcoI | YGGCCR | 1 cut(s) | 574 |
| AcsI | RAATTY | 1 cut(s) | 173 |
| AcyI | GRCGYC | 1 cut(s) | 588 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 626 |
| AgsI | TTSAA | 4 cut(s) | 80, 121, 332, 625 |
| AluBI | AGCT | 3 cut(s) | 307, 317, 489 |
| AluI | AGCT | 3 cut(s) | 307, 317, 489 |
| Alw21I | GWGCWC | 1 cut(s) | 654 |
| Alw26I | GTCTC | 1 cut(s) | 107 |
| AlwI | GGATC | 2 cut(s) | 38, 296 |
| AoxI | GGCC | 3 cut(s) | 430, 574, 629 |
| ApoI | RAATTY | 1 cut(s) | 173 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 150 |
| AspLEI | GCGC | 2 cut(s) | 416, 590 |
| AspS9I | GGNCC | 2 cut(s) | 430, 629 |
| BalI | TGGCCA | 1 cut(s) | 576 |
| BanI | GGYRCC | 1 cut(s) | 587 |
| Bbv12I | GWGCWC | 1 cut(s) | 654 |
| BccI | CCATC | 5 cut(s) | 87, 163, 241, 416, 615 |
| BcoDI | GTCTC | 1 cut(s) | 107 |
| BfaI | CTAG | 2 cut(s) | 453, 474 |
| BfmI | CTRYAG | 1 cut(s) | 279 |
| BfoI | RGCGCY | 1 cut(s) | 591 |
| BisI | GCNGC | 1 cut(s) | 417 |
| BlsI | GCNGC | 1 cut(s) | 418 |
| BmgT120I | GGNCC | 2 cut(s) | 430, 629 |
| BmiI | GGNNCC | 3 cut(s) | 431, 530, 589 |
| BmsI | GCATC | 2 cut(s) | 187, 397 |
| BsaHI | GRCGYC | 1 cut(s) | 588 |
| BsaJI | CCNNGG | 1 cut(s) | 375 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 626 |
| BseDI | CCNNGG | 1 cut(s) | 375 |
| BseGI | GGATG | 1 cut(s) | 607 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 626 |
| BseMII | CTCAG | 1 cut(s) | 639 |
| Bsh1236I | CGCG | 1 cut(s) | 414 |
| BshFI | GGCC | 3 cut(s) | 432, 576, 631 |
| BshNI | GGYRCC | 1 cut(s) | 587 |
| BsiHKAI | GWGCWC | 1 cut(s) | 654 |
| BslFI | GGGAC | 1 cut(s) | 602 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 626 |
| BsmAI | GTCTC | 1 cut(s) | 107 |
| BsmFI | GGGAC | 1 cut(s) | 602 |
| BsnI | GGCC | 3 cut(s) | 432, 576, 631 |
| Bsp1286I | GDGCHC | 1 cut(s) | 654 |
| Bsp143I | GATC | 2 cut(s) | 30, 288 |
| BspACI | CCGC | 2 cut(s) | 106, 417 |
| BspANI | GGCC | 3 cut(s) | 432, 576, 631 |
| BspCNI | CTCAG | 1 cut(s) | 640 |
| BspFNI | CGCG | 1 cut(s) | 414 |
| BspHI | TCATGA | 1 cut(s) | 301 |
| BspLI | GGNNCC | 3 cut(s) | 431, 530, 589 |
| BspMAI | CTGCAG | 1 cut(s) | 283 |
| BspPI | GGATC | 2 cut(s) | 38, 296 |
| BspT107I | GGYRCC | 1 cut(s) | 587 |
| BssECI | CCNNGG | 1 cut(s) | 375 |
| BssMI | GATC | 2 cut(s) | 30, 288 |
| BssNI | GRCGYC | 1 cut(s) | 588 |
| Bst4CI | ACNGT | 1 cut(s) | 376 |
| Bst6I | CTCTTC | 1 cut(s) | 529 |
| BstACI | GRCGYC | 1 cut(s) | 588 |
| BstDEI | CTNAG | 2 cut(s) | 600, 648 |
| BstDSI | CCRYGG | 1 cut(s) | 375 |
| BstEII | GGTNACC | 1 cut(s) | 503 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 624 |
| BstF5I | GGATG | 1 cut(s) | 607 |
| BstFNI | CGCG | 1 cut(s) | 414 |
| BstH2I | RGCGCY | 1 cut(s) | 591 |
| BstHHI | GCGC | 2 cut(s) | 416, 590 |
| BstKTI | GATC | 2 cut(s) | 33, 291 |
| BstMAI | GTCTC | 1 cut(s) | 107 |
| BstMBI | GATC | 2 cut(s) | 30, 288 |
| BstPI | GGTNACC | 1 cut(s) | 503 |
| BstSFI | CTRYAG | 1 cut(s) | 279 |
| BstUI | CGCG | 1 cut(s) | 414 |
| BstX2I | RGATCY | 1 cut(s) | 30 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 584 |
| BstYI | RGATCY | 1 cut(s) | 30 |
| BsuRI | GGCC | 3 cut(s) | 432, 576, 631 |
| BtgI | CCRYGG | 1 cut(s) | 375 |
| BtgZI | GCGATG | 1 cut(s) | 215 |
| BtsCI | GGATG | 1 cut(s) | 607 |
| CciI | TCATGA | 1 cut(s) | 301 |
| CfoI | GCGC | 2 cut(s) | 416, 590 |
| Cfr13I | GGNCC | 2 cut(s) | 430, 629 |
| CviAII | CATG | 4 cut(s) | 166, 302, 338, 578 |
| CviJI | RGCY | 8 cut(s) | 25, 307, 317, 432, 489, 576, 606, 631 |
| CviKI_1 | RGCY | 8 cut(s) | 25, 307, 317, 432, 489, 576, 606, 631 |
| DdeI | CTNAG | 2 cut(s) | 600, 648 |
| DinI | GGCGCC | 1 cut(s) | 589 |
| DpnI | GATC | 2 cut(s) | 32, 290 |
| DpnII | GATC | 2 cut(s) | 30, 288 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 474 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 474 |
| EaeI | YGGCCR | 1 cut(s) | 574 |
| Eam1104I | CTCTTC | 1 cut(s) | 529 |
| EarI | CTCTTC | 1 cut(s) | 529 |
| Eco32I | GATATC | 1 cut(s) | 190 |
| Eco91I | GGTNACC | 1 cut(s) | 503 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 624 |
| EcoO109I | RGGNCCY | 1 cut(s) | 629 |
| EcoO65I | GGTNACC | 1 cut(s) | 503 |
| EcoRV | GATATC | 1 cut(s) | 190 |
| EgeI | GGCGCC | 1 cut(s) | 589 |
| EheI | GGCGCC | 1 cut(s) | 589 |
| FaeI | CATG | 4 cut(s) | 169, 305, 341, 581 |
| FaqI | GGGAC | 1 cut(s) | 602 |
| FatI | CATG | 4 cut(s) | 165, 301, 337, 577 |
| Fnu4HI | GCNGC | 1 cut(s) | 417 |
| FokI | GGATG | 1 cut(s) | 594 |
| Fsp4HI | GCNGC | 1 cut(s) | 417 |
| FspBI | CTAG | 2 cut(s) | 453, 474 |
| GlaI | GCGC | 2 cut(s) | 415, 589 |
| GluI | GCNGC | 1 cut(s) | 417 |
| HaeII | RGCGCY | 1 cut(s) | 591 |
| HaeIII | GGCC | 3 cut(s) | 432, 576, 631 |
| HhaI | GCGC | 2 cut(s) | 416, 590 |
| Hin1I | GRCGYC | 1 cut(s) | 588 |
| Hin1II | CATG | 4 cut(s) | 169, 305, 341, 581 |
| Hin6I | GCGC | 2 cut(s) | 414, 588 |
| HinP1I | GCGC | 2 cut(s) | 414, 588 |
| HincII | GTYRAC | 1 cut(s) | 542 |
| HindII | GTYRAC | 1 cut(s) | 542 |
| HinfI | GANTC | 4 cut(s) | 65, 217, 398, 644 |
| Hpy166II | GTNNAC | 1 cut(s) | 542 |
| Hpy188I | TCNGA | 2 cut(s) | 145, 649 |
| Hpy188III | TCNNGA | 4 cut(s) | 77, 302, 369, 669 |
| Hpy8I | GTNNAC | 1 cut(s) | 542 |
| Hpy99I | CGWCG | 1 cut(s) | 59 |
| HpyAV | CCTTC | 3 cut(s) | 15, 238, 494 |
| HpyCH4III | ACNGT | 1 cut(s) | 376 |
| HpyCH4IV | ACGT | 1 cut(s) | 544 |
| HpyCH4V | TGCA | 2 cut(s) | 254, 281 |
| HpyF3I | CTNAG | 2 cut(s) | 600, 648 |
| HpySE526I | ACGT | 1 cut(s) | 544 |
| Hsp92I | GRCGYC | 1 cut(s) | 588 |
| Hsp92II | CATG | 4 cut(s) | 169, 305, 341, 581 |
| HspAI | GCGC | 2 cut(s) | 414, 588 |
| KasI | GGCGCC | 1 cut(s) | 587 |
| Kzo9I | GATC | 2 cut(s) | 30, 288 |
| LmnI | GCTCC | 1 cut(s) | 314 |
| LpnPI | CCDG | 3 cut(s) | 31, 83, 246 |
| LweI | GCATC | 2 cut(s) | 187, 397 |
| MaeI | CTAG | 2 cut(s) | 453, 474 |
| MaeII | ACGT | 1 cut(s) | 544 |
| MaeIII | GTNAC | 2 cut(s) | 274, 503 |
| MalI | GATC | 2 cut(s) | 32, 290 |
| MboI | GATC | 2 cut(s) | 30, 288 |
| MboII | GAAGA | 2 cut(s) | 367, 546 |
| MflI | RGATCY | 1 cut(s) | 30 |
| MhlI | GDGCHC | 1 cut(s) | 654 |
| MlsI | TGGCCA | 1 cut(s) | 576 |
| MluCI | AATT | 6 cut(s) | 80, 173, 267, 364, 403, 460 |
| MluNI | TGGCCA | 1 cut(s) | 576 |
| Mly113I | GGCGCC | 1 cut(s) | 588 |
| MlyI | GAGTC | 3 cut(s) | 211, 407, 653 |
| MmeI | TCCRAC | 1 cut(s) | 292 |
| MnlI | CCTC | 7 cut(s) | 419, 456, 490, 530, 550, 554, 642 |
| Mox20I | TGGCCA | 1 cut(s) | 576 |
| MroXI | GAANNNNTTC | 1 cut(s) | 150 |
| MscI | TGGCCA | 1 cut(s) | 576 |
| MseI | TTAA | 2 cut(s) | 159, 177 |
| MslI | CAYNNNNRTG | 3 cut(s) | 582, 612, 657 |
| Msp20I | TGGCCA | 1 cut(s) | 576 |
| MspA1I | CMGCKG | 1 cut(s) | 419 |
| MvnI | CGCG | 1 cut(s) | 414 |
| NarI | GGCGCC | 1 cut(s) | 588 |
| NdeII | GATC | 2 cut(s) | 30, 288 |
| NlaIII | CATG | 4 cut(s) | 169, 305, 341, 581 |
| NlaIV | GGNNCC | 3 cut(s) | 431, 530, 589 |
| PagI | TCATGA | 1 cut(s) | 301 |
| PdmI | GAANNNNTTC | 1 cut(s) | 150 |
| PfeI | GAWTC | 1 cut(s) | 65 |
| PkrI | GCNGC | 1 cut(s) | 418 |
| PleI | GAGTC | 3 cut(s) | 211, 406, 652 |
| PluTI | GGCGCC | 1 cut(s) | 591 |
| PpsI | GAGTC | 3 cut(s) | 211, 406, 652 |
| PspEI | GGTNACC | 1 cut(s) | 503 |
| PspN4I | GGNNCC | 3 cut(s) | 431, 530, 589 |
| PspPI | GGNCC | 2 cut(s) | 430, 629 |
| PstI | CTGCAG | 1 cut(s) | 283 |
| PsuI | RGATCY | 1 cut(s) | 30 |
| RseI | CAYNNNNRTG | 3 cut(s) | 582, 612, 657 |
| SaqAI | TTAA | 2 cut(s) | 159, 177 |
| SatI | GCNGC | 1 cut(s) | 417 |
| Sau3AI | GATC | 2 cut(s) | 30, 288 |
| Sau96I | GGNCC | 2 cut(s) | 430, 629 |
| SchI | GAGTC | 3 cut(s) | 211, 407, 653 |
| SduI | GDGCHC | 1 cut(s) | 654 |
| SetI | ASST | 7 cut(s) | 230, 309, 319, 491, 505, 541, 547 |
| SfaNI | GCATC | 2 cut(s) | 187, 397 |
| SfcI | CTRYAG | 1 cut(s) | 279 |
| SfoI | GGCGCC | 1 cut(s) | 589 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 582, 612, 657 |
| Sse9I | AATT | 6 cut(s) | 80, 173, 267, 364, 403, 460 |
| SsiI | CCGC | 2 cut(s) | 106, 417 |
| SspDI | GGCGCC | 1 cut(s) | 587 |
| SspMI | CTAG | 2 cut(s) | 453, 474 |
| TaaI | ACNGT | 1 cut(s) | 376 |
| TaiI | ACGT | 1 cut(s) | 547 |
| TaqI | TCGA | 1 cut(s) | 368 |
| TasI | AATT | 6 cut(s) | 80, 173, 267, 364, 403, 460 |
| TauI | GCSGC | 1 cut(s) | 419 |
| TfiI | GAWTC | 1 cut(s) | 65 |
| Tru1I | TTAA | 2 cut(s) | 159, 177 |
| Tru9I | TTAA | 2 cut(s) | 159, 177 |
| TspDTI | ATGAA | 3 cut(s) | 17, 21, 290 |
| TspGWI | ACGGA | 1 cut(s) | 541 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 624 |
| XapI | RAATTY | 1 cut(s) | 173 |
| XmnI | GAANNNNTTC | 1 cut(s) | 150 |
| XspI | CTAG | 2 cut(s) | 453, 474 |