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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 306 |
| AatII | GACGTC | 1 cut(s) | 304 |
| AccB1I | GGYRCC | 1 cut(s) | 261 |
| AccII | CGCG | 1 cut(s) | 246 |
| AccIII | TCCGGA | 1 cut(s) | 226 |
| AciI | CCGC | 2 cut(s) | 376, 597 |
| AclWI | GGATC | 2 cut(s) | 128, 198 |
| AcoI | YGGCCR | 1 cut(s) | 442 |
| AcsI | RAATTY | 1 cut(s) | 5 |
| AcyI | GRCGYC | 1 cut(s) | 301 |
| AgsI | TTSAA | 1 cut(s) | 493 |
| AluBI | AGCT | 3 cut(s) | 139, 149, 578 |
| AluI | AGCT | 3 cut(s) | 139, 149, 578 |
| Alw26I | GTCTC | 2 cut(s) | 73, 250 |
| AlwI | GGATC | 2 cut(s) | 128, 198 |
| Aor13HI | TCCGGA | 1 cut(s) | 226 |
| AoxI | GGCC | 1 cut(s) | 442 |
| ApoI | RAATTY | 1 cut(s) | 5 |
| AspLEI | GCGC | 2 cut(s) | 248, 499 |
| AspS9I | GGNCC | 1 cut(s) | 308 |
| AsuHPI | GGTGA | 3 cut(s) | 329, 365, 586 |
| AvaII | GGWCC | 1 cut(s) | 308 |
| BaeGI | GKGCMC | 1 cut(s) | 565 |
| BalI | TGGCCA | 1 cut(s) | 444 |
| BanI | GGYRCC | 1 cut(s) | 261 |
| BbsI | GAAGAC | 1 cut(s) | 53 |
| BccI | CCATC | 2 cut(s) | 73, 483 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 92, 126 |
| BciVI | GTATCC | 1 cut(s) | 283 |
| BcoDI | GTCTC | 2 cut(s) | 73, 250 |
| BfaI | CTAG | 1 cut(s) | 665 |
| BfmI | CTRYAG | 1 cut(s) | 111 |
| BfoI | RGCGCY | 1 cut(s) | 500 |
| BfuI | GTATCC | 1 cut(s) | 283 |
| Bme18I | GGWCC | 1 cut(s) | 308 |
| BmgT120I | GGNCC | 1 cut(s) | 308 |
| BmiI | GGNNCC | 4 cut(s) | 263, 362, 398, 457 |
| BmsI | GCATC | 1 cut(s) | 19 |
| BpiI | GAAGAC | 1 cut(s) | 53 |
| Bsa29I | ATCGAT | 1 cut(s) | 102 |
| BsaHI | GRCGYC | 1 cut(s) | 301 |
| BsaJI | CCNNGG | 1 cut(s) | 207 |
| BsaWI | WCCGGW | 1 cut(s) | 226 |
| Bse3DI | GCAATG | 1 cut(s) | 39 |
| BseAI | TCCGGA | 1 cut(s) | 226 |
| BseCI | ATCGAT | 1 cut(s) | 102 |
| BseDI | CCNNGG | 1 cut(s) | 207 |
| BseMI | GCAATG | 1 cut(s) | 39 |
| BseSI | GKGCMC | 1 cut(s) | 565 |
| Bsh1236I | CGCG | 1 cut(s) | 246 |
| BshFI | GGCC | 1 cut(s) | 444 |
| BshNI | GGYRCC | 1 cut(s) | 261 |
| BshVI | ATCGAT | 1 cut(s) | 102 |
| BsiSI | CCGG | 1 cut(s) | 227 |
| BslFI | GGGAC | 1 cut(s) | 312 |
| BsmAI | GTCTC | 2 cut(s) | 73, 250 |
| BsmBI | CGTCTC | 2 cut(s) | 73, 250 |
| BsmFI | GGGAC | 1 cut(s) | 312 |
| BsnI | GGCC | 1 cut(s) | 444 |
| Bsp1286I | GDGCHC | 1 cut(s) | 565 |
| Bsp13I | TCCGGA | 1 cut(s) | 226 |
| Bsp143I | GATC | 5 cut(s) | 21, 120, 203, 649, 661 |
| Bsp19I | CCATGG | 1 cut(s) | 207 |
| BspACI | CCGC | 2 cut(s) | 376, 597 |
| BspANI | GGCC | 1 cut(s) | 444 |
| BspDI | ATCGAT | 1 cut(s) | 102 |
| BspEI | TCCGGA | 1 cut(s) | 226 |
| BspFNI | CGCG | 1 cut(s) | 246 |
| BspHI | TCATGA | 1 cut(s) | 133 |
| BspLI | GGNNCC | 4 cut(s) | 263, 362, 398, 457 |
| BspMAI | CTGCAG | 1 cut(s) | 115 |
| BspPI | GGATC | 2 cut(s) | 128, 198 |
| BspT107I | GGYRCC | 1 cut(s) | 261 |
| BsrDI | GCAATG | 1 cut(s) | 39 |
| BssECI | CCNNGG | 1 cut(s) | 207 |
| BssMI | GATC | 5 cut(s) | 21, 120, 203, 649, 661 |
| BssNI | GRCGYC | 1 cut(s) | 301 |
| BssT1I | CCWWGG | 1 cut(s) | 207 |
| Bst4CI | ACNGT | 1 cut(s) | 261 |
| Bst6I | CTCTTC | 2 cut(s) | 361, 397 |
| BstACI | GRCGYC | 1 cut(s) | 301 |
| BstDEI | CTNAG | 3 cut(s) | 252, 284, 468 |
| BstDSI | CCRYGG | 1 cut(s) | 207 |
| BstEII | GGTNACC | 2 cut(s) | 335, 371 |
| BstFNI | CGCG | 1 cut(s) | 246 |
| BstH2I | RGCGCY | 1 cut(s) | 500 |
| BstHHI | GCGC | 2 cut(s) | 248, 499 |
| BstKTI | GATC | 5 cut(s) | 24, 123, 206, 652, 664 |
| BstMAI | GTCTC | 2 cut(s) | 73, 250 |
| BstMBI | GATC | 5 cut(s) | 21, 120, 203, 649, 661 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 494, 605, 626 |
| BstPI | GGTNACC | 2 cut(s) | 335, 371 |
| BstSFI | CTRYAG | 1 cut(s) | 111 |
| BstSLI | GKGCMC | 1 cut(s) | 565 |
| BstUI | CGCG | 1 cut(s) | 246 |
| BstV2I | GAAGAC | 1 cut(s) | 53 |
| BstX2I | RGATCY | 1 cut(s) | 203 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 452 |
| BstYI | RGATCY | 1 cut(s) | 203 |
| Bsu15I | ATCGAT | 1 cut(s) | 102 |
| BsuI | GTATCC | 1 cut(s) | 283 |
| BsuRI | GGCC | 1 cut(s) | 444 |
| BsuTUI | ATCGAT | 1 cut(s) | 102 |
| BtgI | CCRYGG | 1 cut(s) | 207 |
| BtsIMutI | CAGTG | 1 cut(s) | 159 |
| CciI | TCATGA | 1 cut(s) | 133 |
| CfoI | GCGC | 2 cut(s) | 248, 499 |
| Cfr13I | GGNCC | 1 cut(s) | 308 |
| ClaI | ATCGAT | 1 cut(s) | 102 |
| CviAII | CATG | 5 cut(s) | 134, 170, 208, 357, 446 |
| CviJI | RGCY | 7 cut(s) | 139, 149, 444, 456, 474, 578, 629 |
| CviKI_1 | RGCY | 7 cut(s) | 139, 149, 444, 456, 474, 578, 629 |
| DdeI | CTNAG | 3 cut(s) | 252, 284, 468 |
| DpnI | GATC | 5 cut(s) | 23, 122, 205, 651, 663 |
| DpnII | GATC | 5 cut(s) | 21, 120, 203, 649, 661 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 306 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 306 |
| EaeI | YGGCCR | 1 cut(s) | 442 |
| Eam1104I | CTCTTC | 2 cut(s) | 361, 397 |
| EarI | CTCTTC | 2 cut(s) | 361, 397 |
| Eco130I | CCWWGG | 1 cut(s) | 207 |
| Eco47I | GGWCC | 1 cut(s) | 308 |
| Eco91I | GGTNACC | 2 cut(s) | 335, 371 |
| EcoO65I | GGTNACC | 2 cut(s) | 335, 371 |
| EcoRI | GAATTC | 1 cut(s) | 5 |
| EcoT14I | CCWWGG | 1 cut(s) | 207 |
| ErhI | CCWWGG | 1 cut(s) | 207 |
| Esp3I | CGTCTC | 2 cut(s) | 73, 250 |
| FaeI | CATG | 5 cut(s) | 137, 173, 211, 360, 449 |
| FaqI | GGGAC | 1 cut(s) | 312 |
| FatI | CATG | 5 cut(s) | 133, 169, 207, 356, 445 |
| FspBI | CTAG | 1 cut(s) | 665 |
| GlaI | GCGC | 2 cut(s) | 247, 498 |
| HaeII | RGCGCY | 1 cut(s) | 500 |
| HaeIII | GGCC | 1 cut(s) | 444 |
| HapII | CCGG | 1 cut(s) | 227 |
| HhaI | GCGC | 2 cut(s) | 248, 499 |
| Hin1I | GRCGYC | 1 cut(s) | 301 |
| Hin1II | CATG | 5 cut(s) | 137, 173, 211, 360, 449 |
| Hin6I | GCGC | 2 cut(s) | 246, 497 |
| HinP1I | GCGC | 2 cut(s) | 246, 497 |
| HinfI | GANTC | 3 cut(s) | 49, 99, 230 |
| HpaII | CCGG | 1 cut(s) | 227 |
| HphI | GGTGA | 3 cut(s) | 329, 365, 586 |
| Hpy188III | TCNNGA | 8 cut(s) | 17, 134, 201, 227, 297, 537, 653, 665 |
| HpyAV | CCTTC | 2 cut(s) | 70, 326 |
| HpyCH4III | ACNGT | 1 cut(s) | 261 |
| HpyCH4IV | ACGT | 1 cut(s) | 301 |
| HpyCH4V | TGCA | 3 cut(s) | 32, 74, 113 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 494, 605, 626 |
| HpyF3I | CTNAG | 3 cut(s) | 252, 284, 468 |
| HpySE526I | ACGT | 1 cut(s) | 301 |
| Hsp92I | GRCGYC | 1 cut(s) | 301 |
| Hsp92II | CATG | 5 cut(s) | 137, 173, 211, 360, 449 |
| HspAI | GCGC | 2 cut(s) | 246, 497 |
| Kpn2I | TCCGGA | 1 cut(s) | 226 |
| Kzo9I | GATC | 5 cut(s) | 21, 120, 203, 649, 661 |
| LmnI | GCTCC | 2 cut(s) | 146, 461 |
| LpnPI | CCDG | 4 cut(s) | 99, 240, 426, 606 |
| LweI | GCATC | 1 cut(s) | 19 |
| MaeI | CTAG | 1 cut(s) | 665 |
| MaeII | ACGT | 1 cut(s) | 301 |
| MaeIII | GTNAC | 5 cut(s) | 106, 157, 335, 371, 592 |
| MalI | GATC | 5 cut(s) | 23, 122, 205, 651, 663 |
| MboI | GATC | 5 cut(s) | 21, 120, 203, 649, 661 |
| MboII | GAAGA | 7 cut(s) | 58, 199, 378, 414, 596, 659, 668 |
| MflI | RGATCY | 1 cut(s) | 203 |
| MhlI | GDGCHC | 1 cut(s) | 565 |
| MlsI | TGGCCA | 1 cut(s) | 444 |
| MluCI | AATT | 6 cut(s) | 5, 196, 235, 316, 481, 588 |
| MluNI | TGGCCA | 1 cut(s) | 444 |
| MlyI | GAGTC | 1 cut(s) | 43 |
| MnlI | CCTC | 6 cut(s) | 362, 398, 418, 448, 510, 619 |
| Mox20I | TGGCCA | 1 cut(s) | 444 |
| MroI | TCCGGA | 1 cut(s) | 226 |
| MscI | TGGCCA | 1 cut(s) | 444 |
| MseI | TTAA | 1 cut(s) | 552 |
| MslI | CAYNNNNRTG | 2 cut(s) | 182, 450 |
| Msp20I | TGGCCA | 1 cut(s) | 444 |
| MspI | CCGG | 1 cut(s) | 227 |
| MvnI | CGCG | 1 cut(s) | 246 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 494, 605, 626 |
| NcoI | CCATGG | 1 cut(s) | 207 |
| NdeII | GATC | 5 cut(s) | 21, 120, 203, 649, 661 |
| NlaIII | CATG | 5 cut(s) | 137, 173, 211, 360, 449 |
| NlaIV | GGNNCC | 4 cut(s) | 263, 362, 398, 457 |
| NmuCI | GTSAC | 4 cut(s) | 157, 335, 371, 592 |
| PagI | TCATGA | 1 cut(s) | 133 |
| PfeI | GAWTC | 2 cut(s) | 99, 230 |
| PleI | GAGTC | 1 cut(s) | 43 |
| PpsI | GAGTC | 1 cut(s) | 43 |
| PspEI | GGTNACC | 2 cut(s) | 335, 371 |
| PspN4I | GGNNCC | 4 cut(s) | 263, 362, 398, 457 |
| PspPI | GGNCC | 1 cut(s) | 308 |
| PstI | CTGCAG | 1 cut(s) | 115 |
| PsuI | RGATCY | 1 cut(s) | 203 |
| RseI | CAYNNNNRTG | 2 cut(s) | 182, 450 |
| SaqAI | TTAA | 1 cut(s) | 552 |
| Sau3AI | GATC | 5 cut(s) | 21, 120, 203, 649, 661 |
| Sau96I | GGNCC | 1 cut(s) | 308 |
| SchI | GAGTC | 1 cut(s) | 43 |
| SduI | GDGCHC | 1 cut(s) | 565 |
| SfaNI | GCATC | 1 cut(s) | 19 |
| SfcI | CTRYAG | 1 cut(s) | 111 |
| SinI | GGWCC | 1 cut(s) | 308 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 182, 450 |
| Sse9I | AATT | 6 cut(s) | 5, 196, 235, 316, 481, 588 |
| SsiI | CCGC | 2 cut(s) | 376, 597 |
| SspMI | CTAG | 1 cut(s) | 665 |
| StyI | CCWWGG | 1 cut(s) | 207 |
| TaaI | ACNGT | 1 cut(s) | 261 |
| TaiI | ACGT | 1 cut(s) | 304 |
| TaqI | TCGA | 4 cut(s) | 97, 102, 200, 538 |
| TasI | AATT | 6 cut(s) | 5, 196, 235, 316, 481, 588 |
| TfiI | GAWTC | 2 cut(s) | 99, 230 |
| Tru1I | TTAA | 1 cut(s) | 552 |
| Tru9I | TTAA | 1 cut(s) | 552 |
| TscAI | CASTG | 1 cut(s) | 166 |
| TseFI | GTSAC | 4 cut(s) | 157, 335, 371, 592 |
| Tsp45I | GTSAC | 4 cut(s) | 157, 335, 371, 592 |
| TspDTI | ATGAA | 3 cut(s) | 104, 122, 167 |
| TspGWI | ACGGA | 2 cut(s) | 133, 409 |
| TspRI | CASTG | 1 cut(s) | 166 |
| VpaK11BI | GGWCC | 1 cut(s) | 308 |
| XapI | RAATTY | 1 cut(s) | 5 |
| XbaI | TCTAGA | 1 cut(s) | 664 |
| XspI | CTAG | 1 cut(s) | 665 |
| ZraI | GACGTC | 1 cut(s) | 302 |