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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 121 |
| AciI | CCGC | 1 cut(s) | 487 |
| AcuI | CTGAAG | 2 cut(s) | 513, 720 |
| AcyI | GRCGYC | 1 cut(s) | 190 |
| AfeI | AGCGCT | 2 cut(s) | 258, 269 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 64, 393 |
| AgsI | TTSAA | 6 cut(s) | 96, 307, 314, 343, 594, 694 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 410 |
| AjnI | CCWGG | 1 cut(s) | 117 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 255, 287, 486, 518 |
| AluBI | AGCT | 7 cut(s) | 247, 371, 427, 529, 551, 590, 698 |
| AluI | AGCT | 7 cut(s) | 247, 371, 427, 529, 551, 590, 698 |
| Alw21I | GWGCWC | 1 cut(s) | 714 |
| Alw44I | GTGCAC | 1 cut(s) | 710 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 50 |
| Aor51HI | AGCGCT | 2 cut(s) | 258, 269 |
| ApaLI | GTGCAC | 1 cut(s) | 710 |
| ApeKI | GCWGC | 1 cut(s) | 722 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 86, 372 |
| AspLEI | GCGC | 2 cut(s) | 259, 270 |
| AspS9I | GGNCC | 1 cut(s) | 613 |
| AsuHPI | GGTGA | 2 cut(s) | 515, 670 |
| AvaII | GGWCC | 1 cut(s) | 613 |
| AxyI | CCTNAGG | 1 cut(s) | 617 |
| BaeGI | GKGCMC | 1 cut(s) | 714 |
| BanI | GGYRCC | 1 cut(s) | 121 |
| BauI | CACGAG | 1 cut(s) | 514 |
| Bbv12I | GWGCWC | 1 cut(s) | 714 |
| BbvI | GCAGC | 1 cut(s) | 709 |
| BccI | CCATC | 1 cut(s) | 653 |
| BciT130I | CCWGG | 1 cut(s) | 119 |
| BfaI | CTAG | 3 cut(s) | 15, 260, 587 |
| BfmI | CTRYAG | 2 cut(s) | 546, 723 |
| BfoI | RGCGCY | 2 cut(s) | 260, 271 |
| BisI | GCNGC | 1 cut(s) | 723 |
| BlsI | GCNGC | 1 cut(s) | 724 |
| Bme1390I | CCNGG | 1 cut(s) | 119 |
| Bme18I | GGWCC | 1 cut(s) | 613 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 410 |
| BmgT120I | GGNCC | 1 cut(s) | 613 |
| BmiI | GGNNCC | 1 cut(s) | 123 |
| BmrFI | CCNGG | 1 cut(s) | 119 |
| BmsI | GCATC | 3 cut(s) | 174, 226, 709 |
| BpuEI | CTTGAG | 1 cut(s) | 153 |
| BsaHI | GRCGYC | 1 cut(s) | 190 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 209, 239 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 64, 393 |
| Bse21I | CCTNAGG | 1 cut(s) | 617 |
| Bse3DI | GCAATG | 1 cut(s) | 283 |
| BseBI | CCWGG | 1 cut(s) | 119 |
| BseGI | GGATG | 3 cut(s) | 241, 294, 724 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 64, 393 |
| BseMI | GCAATG | 1 cut(s) | 283 |
| BseMII | CTCAG | 3 cut(s) | 223, 543, 608 |
| BseSI | GKGCMC | 1 cut(s) | 714 |
| BseXI | GCAGC | 1 cut(s) | 709 |
| BshNI | GGYRCC | 1 cut(s) | 121 |
| BsiHKAI | GWGCWC | 1 cut(s) | 714 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 64, 393 |
| Bsp1286I | GDGCHC | 1 cut(s) | 714 |
| Bsp143I | GATC | 3 cut(s) | 133, 228, 510 |
| BspACI | CCGC | 1 cut(s) | 487 |
| BspCNI | CTCAG | 3 cut(s) | 222, 544, 609 |
| BspLI | GGNNCC | 1 cut(s) | 123 |
| BspMAI | CTGCAG | 1 cut(s) | 727 |
| BspQI | GCTCTTC | 2 cut(s) | 258, 378 |
| BspT107I | GGYRCC | 1 cut(s) | 121 |
| BsrDI | GCAATG | 1 cut(s) | 283 |
| BssMI | GATC | 3 cut(s) | 133, 228, 510 |
| BssNI | GRCGYC | 1 cut(s) | 190 |
| BssSI | CACGAG | 1 cut(s) | 514 |
| Bst2BI | CACGAG | 1 cut(s) | 514 |
| Bst2UI | CCWGG | 1 cut(s) | 119 |
| Bst4CI | ACNGT | 2 cut(s) | 62, 384 |
| Bst6I | CTCTTC | 2 cut(s) | 258, 378 |
| BstACI | GRCGYC | 1 cut(s) | 190 |
| BstC8I | GCNNGC | 3 cut(s) | 165, 577, 581 |
| BstDEI | CTNAG | 3 cut(s) | 209, 552, 617 |
| BstEII | GGTNACC | 1 cut(s) | 67 |
| BstF5I | GGATG | 3 cut(s) | 241, 294, 724 |
| BstH2I | RGCGCY | 2 cut(s) | 260, 271 |
| BstHHI | GCGC | 2 cut(s) | 259, 270 |
| BstKTI | GATC | 3 cut(s) | 136, 231, 513 |
| BstMBI | GATC | 3 cut(s) | 133, 228, 510 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 265 |
| BstNI | CCWGG | 1 cut(s) | 119 |
| BstNSI | RCATGY | 1 cut(s) | 167 |
| BstPI | GGTNACC | 1 cut(s) | 67 |
| BstSCI | CCNGG | 1 cut(s) | 117 |
| BstSFI | CTRYAG | 2 cut(s) | 546, 723 |
| BstSLI | GKGCMC | 1 cut(s) | 714 |
| BstV1I | GCAGC | 1 cut(s) | 709 |
| Bsu36I | CCTNAGG | 1 cut(s) | 617 |
| BtsCI | GGATG | 3 cut(s) | 241, 294, 724 |
| BtsIMutI | CAGTG | 1 cut(s) | 489 |
| Cac8I | GCNNGC | 3 cut(s) | 165, 577, 581 |
| CaiI | CAGNNNCTG | 1 cut(s) | 50 |
| CfoI | GCGC | 2 cut(s) | 259, 270 |
| Cfr13I | GGNCC | 1 cut(s) | 613 |
| CseI | GACGC | 1 cut(s) | 198 |
| CviAII | CATG | 6 cut(s) | 31, 137, 164, 388, 560, 601 |
| CviJI | RGCY | 8 cut(s) | 247, 371, 427, 464, 529, 551, 590, 698 |
| CviKI_1 | RGCY | 8 cut(s) | 247, 371, 427, 464, 529, 551, 590, 698 |
| DdeI | CTNAG | 3 cut(s) | 209, 552, 617 |
| DpnI | GATC | 3 cut(s) | 135, 230, 512 |
| DpnII | GATC | 3 cut(s) | 133, 228, 510 |
| DriI | GACNNNNNGTC | 1 cut(s) | 410 |
| Eam1104I | CTCTTC | 2 cut(s) | 258, 378 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 410 |
| EarI | CTCTTC | 2 cut(s) | 258, 378 |
| Eco47I | GGWCC | 1 cut(s) | 613 |
| Eco47III | AGCGCT | 2 cut(s) | 258, 269 |
| Eco57I | CTGAAG | 2 cut(s) | 513, 720 |
| Eco81I | CCTNAGG | 1 cut(s) | 617 |
| Eco91I | GGTNACC | 1 cut(s) | 67 |
| EcoO109I | RGGNCCY | 1 cut(s) | 613 |
| EcoO65I | GGTNACC | 1 cut(s) | 67 |
| EcoRII | CCWGG | 1 cut(s) | 117 |
| FaeI | CATG | 6 cut(s) | 34, 140, 167, 391, 563, 604 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 621, 653 |
| FatI | CATG | 6 cut(s) | 30, 136, 163, 387, 559, 600 |
| FauNDI | CATATG | 1 cut(s) | 195 |
| Fnu4HI | GCNGC | 1 cut(s) | 723 |
| FokI | GGATG | 3 cut(s) | 248, 281, 731 |
| Fsp4HI | GCNGC | 1 cut(s) | 723 |
| FspBI | CTAG | 3 cut(s) | 15, 260, 587 |
| GlaI | GCGC | 2 cut(s) | 258, 269 |
| GluI | GCNGC | 1 cut(s) | 723 |
| HaeII | RGCGCY | 2 cut(s) | 260, 271 |
| HgaI | GACGC | 1 cut(s) | 198 |
| HhaI | GCGC | 2 cut(s) | 259, 270 |
| Hin1I | GRCGYC | 1 cut(s) | 190 |
| Hin1II | CATG | 6 cut(s) | 34, 140, 167, 391, 563, 604 |
| Hin6I | GCGC | 2 cut(s) | 257, 268 |
| HinP1I | GCGC | 2 cut(s) | 257, 268 |
| HinfI | GANTC | 3 cut(s) | 18, 38, 287 |
| HphI | GGTGA | 2 cut(s) | 515, 670 |
| Hpy166II | GTNNAC | 2 cut(s) | 404, 712 |
| Hpy188I | TCNGA | 3 cut(s) | 52, 212, 367 |
| Hpy188III | TCNNGA | 3 cut(s) | 181, 514, 594 |
| Hpy8I | GTNNAC | 2 cut(s) | 404, 712 |
| Hpy99I | CGWCG | 1 cut(s) | 192 |
| HpyAV | CCTTC | 2 cut(s) | 301, 460 |
| HpyCH4III | ACNGT | 2 cut(s) | 62, 384 |
| HpyCH4V | TGCA | 4 cut(s) | 239, 641, 712, 725 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 265 |
| HpyF3I | CTNAG | 3 cut(s) | 209, 552, 617 |
| Hsp92I | GRCGYC | 1 cut(s) | 190 |
| Hsp92II | CATG | 6 cut(s) | 34, 140, 167, 391, 563, 604 |
| HspAI | GCGC | 2 cut(s) | 257, 268 |
| Kzo9I | GATC | 3 cut(s) | 133, 228, 510 |
| LguI | GCTCTTC | 2 cut(s) | 258, 378 |
| LmnI | GCTCC | 1 cut(s) | 622 |
| LpnPI | CCDG | 7 cut(s) | 30, 104, 131, 144, 312, 539, 629 |
| Lsp1109I | GCAGC | 1 cut(s) | 709 |
| LweI | GCATC | 3 cut(s) | 174, 226, 709 |
| MaeI | CTAG | 3 cut(s) | 15, 260, 587 |
| MaeIII | GTNAC | 3 cut(s) | 67, 412, 676 |
| MalI | GATC | 3 cut(s) | 135, 230, 512 |
| MboI | GATC | 3 cut(s) | 133, 228, 510 |
| MboII | GAAGA | 6 cut(s) | 275, 365, 656, 659, 662, 713 |
| MhlI | GDGCHC | 1 cut(s) | 714 |
| MluCI | AATT | 2 cut(s) | 361, 429 |
| MlyI | GAGTC | 2 cut(s) | 12, 32 |
| MmeI | TCCRAC | 1 cut(s) | 484 |
| MnlI | CCTC | 5 cut(s) | 302, 387, 510, 612, 679 |
| MroXI | GAANNNNTTC | 2 cut(s) | 86, 372 |
| MslI | CAYNNNNRTG | 1 cut(s) | 717 |
| MspR9I | CCNGG | 1 cut(s) | 119 |
| MvaI | CCWGG | 1 cut(s) | 119 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 265 |
| NdeI | CATATG | 1 cut(s) | 195 |
| NdeII | GATC | 3 cut(s) | 133, 228, 510 |
| NlaIII | CATG | 6 cut(s) | 34, 140, 167, 391, 563, 604 |
| NlaIV | GGNNCC | 1 cut(s) | 123 |
| NmuCI | GTSAC | 2 cut(s) | 412, 676 |
| NspI | RCATGY | 1 cut(s) | 167 |
| PaeI | GCATGC | 1 cut(s) | 167 |
| PciSI | GCTCTTC | 2 cut(s) | 258, 378 |
| PdmI | GAANNNNTTC | 2 cut(s) | 86, 372 |
| PfeI | GAWTC | 1 cut(s) | 287 |
| PkrI | GCNGC | 1 cut(s) | 724 |
| PleI | GAGTC | 2 cut(s) | 12, 32 |
| PpsI | GAGTC | 2 cut(s) | 12, 32 |
| PpuMI | RGGWCCY | 1 cut(s) | 613 |
| Psp5II | RGGWCCY | 1 cut(s) | 613 |
| Psp6I | CCWGG | 1 cut(s) | 117 |
| PspEI | GGTNACC | 1 cut(s) | 67 |
| PspGI | CCWGG | 1 cut(s) | 117 |
| PspN4I | GGNNCC | 1 cut(s) | 123 |
| PspPI | GGNCC | 1 cut(s) | 613 |
| PspPPI | RGGWCCY | 1 cut(s) | 613 |
| PstI | CTGCAG | 1 cut(s) | 727 |
| PstNI | CAGNNNCTG | 1 cut(s) | 50 |
| RseI | CAYNNNNRTG | 1 cut(s) | 717 |
| SapI | GCTCTTC | 2 cut(s) | 258, 378 |
| SatI | GCNGC | 1 cut(s) | 723 |
| Sau3AI | GATC | 3 cut(s) | 133, 228, 510 |
| Sau96I | GGNCC | 1 cut(s) | 613 |
| SchI | GAGTC | 2 cut(s) | 12, 32 |
| ScrFI | CCNGG | 1 cut(s) | 119 |
| SduI | GDGCHC | 1 cut(s) | 714 |
| SfaNI | GCATC | 3 cut(s) | 174, 226, 709 |
| SfcI | CTRYAG | 2 cut(s) | 546, 723 |
| SinI | GGWCC | 1 cut(s) | 613 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 717 |
| SmlI | CTYRAG | 1 cut(s) | 168 |
| SmoI | CTYRAG | 1 cut(s) | 168 |
| SphI | GCATGC | 1 cut(s) | 167 |
| Sse9I | AATT | 2 cut(s) | 361, 429 |
| SsiI | CCGC | 1 cut(s) | 487 |
| SspI | AATATT | 1 cut(s) | 105 |
| SspMI | CTAG | 3 cut(s) | 15, 260, 587 |
| StyD4I | CCNGG | 1 cut(s) | 117 |
| TaaI | ACNGT | 2 cut(s) | 62, 384 |
| TaqI | TCGA | 3 cut(s) | 5, 21, 227 |
| TasI | AATT | 2 cut(s) | 361, 429 |
| TfiI | GAWTC | 1 cut(s) | 287 |
| TscAI | CASTG | 1 cut(s) | 496 |
| TseFI | GTSAC | 2 cut(s) | 412, 676 |
| TseI | GCWGC | 1 cut(s) | 722 |
| Tsp45I | GTSAC | 2 cut(s) | 412, 676 |
| TspDTI | ATGAA | 2 cut(s) | 24, 720 |
| TspRI | CASTG | 1 cut(s) | 496 |
| VneI | GTGCAC | 1 cut(s) | 710 |
| VpaK11BI | GGWCC | 1 cut(s) | 613 |
| XceI | RCATGY | 1 cut(s) | 167 |
| XmnI | GAANNNNTTC | 2 cut(s) | 86, 372 |
| XspI | CTAG | 3 cut(s) | 15, 260, 587 |