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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 636 |
| AarI | CACCTGC | 1 cut(s) | 154 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 972 |
| Acc36I | ACCTGC | 2 cut(s) | 154, 226 |
| AccB1I | GGYRCC | 1 cut(s) | 812 |
| AccBSI | CCGCTC | 1 cut(s) | 253 |
| AccII | CGCG | 2 cut(s) | 19, 912 |
| AciI | CCGC | 4 cut(s) | 30, 225, 251, 604 |
| AcoI | YGGCCR | 7 cut(s) | 49, 69, 199, 334, 345, 359, 384 |
| AcsI | RAATTY | 4 cut(s) | 181, 205, 326, 350 |
| AfaI | GTAC | 2 cut(s) | 91, 1021 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 47, 74, 99, 343, 463, 923, 994 |
| AflII | CTTAAG | 1 cut(s) | 488 |
| AgsI | TTSAA | 5 cut(s) | 106, 210, 566, 619, 753 |
| AjiI | CACGTC | 1 cut(s) | 262 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 524, 556 |
| AluBI | AGCT | 7 cut(s) | 26, 418, 554, 578, 647, 805, 827 |
| AluI | AGCT | 7 cut(s) | 26, 418, 554, 578, 647, 805, 827 |
| Alw21I | GWGCWC | 1 cut(s) | 540 |
| Alw26I | GTCTC | 1 cut(s) | 431 |
| AoxI | GGCC | 9 cut(s) | 31, 49, 69, 199, 229, 334, 345, 359, 384 |
| ApeKI | GCWGC | 1 cut(s) | 129 |
| ApoI | RAATTY | 4 cut(s) | 181, 205, 326, 350 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 648 |
| AspLEI | GCGC | 5 cut(s) | 6, 19, 449, 480, 914 |
| AspS9I | GGNCC | 4 cut(s) | 32, 230, 466, 974 |
| AsuC2I | CCSGG | 1 cut(s) | 100 |
| AsuHPI | GGTGA | 2 cut(s) | 109, 178 |
| AvaII | GGWCC | 2 cut(s) | 466, 974 |
| BanI | GGYRCC | 1 cut(s) | 812 |
| BauI | CACGAG | 2 cut(s) | 790, 848 |
| BbsI | GAAGAC | 1 cut(s) | 719 |
| Bbv12I | GWGCWC | 1 cut(s) | 540 |
| BbvI | GCAGC | 1 cut(s) | 141 |
| BccI | CCATC | 6 cut(s) | 44, 395, 491, 521, 661, 740 |
| BciVI | GTATCC | 1 cut(s) | 446 |
| BcnI | CCSGG | 1 cut(s) | 100 |
| BcoDI | GTCTC | 1 cut(s) | 431 |
| BfaI | CTAG | 4 cut(s) | 434, 525, 867, 963 |
| BfmI | CTRYAG | 1 cut(s) | 127 |
| BfrI | CTTAAG | 1 cut(s) | 488 |
| BfuAI | ACCTGC | 2 cut(s) | 154, 226 |
| BfuI | GTATCC | 1 cut(s) | 446 |
| BisI | GCNGC | 2 cut(s) | 31, 130 |
| BlsI | GCNGC | 2 cut(s) | 32, 131 |
| Bme1390I | CCNGG | 1 cut(s) | 100 |
| Bme18I | GGWCC | 2 cut(s) | 466, 974 |
| BmgBI | CACGTC | 1 cut(s) | 262 |
| BmgT120I | GGNCC | 4 cut(s) | 32, 230, 466, 974 |
| BmiI | GGNNCC | 6 cut(s) | 34, 196, 232, 467, 814, 1028 |
| BmrFI | CCNGG | 1 cut(s) | 100 |
| BpiI | GAAGAC | 1 cut(s) | 719 |
| BpuMI | CCSGG | 1 cut(s) | 100 |
| BsaBI | GATNNNNATC | 1 cut(s) | 704 |
| BsaJI | CCNNGG | 3 cut(s) | 873, 918, 1030 |
| BsaWI | WCCGGW | 4 cut(s) | 74, 191, 272, 369 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 524, 554 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 47, 74, 99, 343, 463, 923, 994 |
| Bse118I | RCCGGY | 5 cut(s) | 47, 51, 67, 197, 293 |
| Bse1I | ACTGG | 1 cut(s) | 448 |
| Bse8I | GATNNNNATC | 1 cut(s) | 704 |
| BseDI | CCNNGG | 3 cut(s) | 873, 918, 1030 |
| BseGI | GGATG | 4 cut(s) | 36, 405, 513, 788 |
| BseJI | GATNNNNATC | 1 cut(s) | 704 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 47, 74, 99, 343, 463, 923, 994 |
| BseNI | ACTGG | 1 cut(s) | 448 |
| BseX3I | CGGCCG | 1 cut(s) | 49 |
| BseXI | GCAGC | 1 cut(s) | 141 |
| BseYI | CCCAGC | 1 cut(s) | 233 |
| Bsh1236I | CGCG | 2 cut(s) | 19, 912 |
| Bsh1285I | CGRYCG | 1 cut(s) | 52 |
| BshFI | GGCC | 9 cut(s) | 33, 51, 71, 201, 231, 336, 347, 361, 386 |
| BshNI | GGYRCC | 1 cut(s) | 812 |
| BsiEI | CGRYCG | 1 cut(s) | 52 |
| BsiHKAI | GWGCWC | 1 cut(s) | 540 |
| BslFI | GGGAC | 2 cut(s) | 646, 968 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 47, 74, 99, 343, 463, 923, 994 |
| BsmAI | GTCTC | 1 cut(s) | 431 |
| BsmFI | GGGAC | 2 cut(s) | 646, 968 |
| BsnI | GGCC | 9 cut(s) | 33, 51, 71, 201, 231, 336, 347, 361, 386 |
| Bsp1286I | GDGCHC | 1 cut(s) | 540 |
| Bsp143I | GATC | 2 cut(s) | 281, 705 |
| BspACI | CCGC | 4 cut(s) | 30, 225, 251, 604 |
| BspANI | GGCC | 9 cut(s) | 33, 51, 71, 201, 231, 336, 347, 361, 386 |
| BspFNI | CGCG | 2 cut(s) | 19, 912 |
| BspHI | TCATGA | 1 cut(s) | 799 |
| BspLI | GGNNCC | 6 cut(s) | 34, 196, 232, 467, 814, 1028 |
| BspMAI | CTGCAG | 1 cut(s) | 131 |
| BspMI | ACCTGC | 2 cut(s) | 154, 226 |
| BspT107I | GGYRCC | 1 cut(s) | 812 |
| BspTI | CTTAAG | 1 cut(s) | 488 |
| BsrBI | CCGCTC | 1 cut(s) | 253 |
| BsrFI | RCCGGY | 5 cut(s) | 47, 51, 67, 197, 293 |
| BsrI | ACTGG | 1 cut(s) | 448 |
| BssAI | RCCGGY | 5 cut(s) | 47, 51, 67, 197, 293 |
| BssECI | CCNNGG | 3 cut(s) | 873, 918, 1030 |
| BssMI | GATC | 2 cut(s) | 281, 705 |
| BssSI | CACGAG | 2 cut(s) | 790, 848 |
| BssT1I | CCWWGG | 2 cut(s) | 918, 1030 |
| Bst2BI | CACGAG | 2 cut(s) | 790, 848 |
| BstAFI | CTTAAG | 1 cut(s) | 488 |
| BstC8I | GCNNGC | 5 cut(s) | 8, 28, 53, 229, 552 |
| BstDEI | CTNAG | 2 cut(s) | 882, 945 |
| BstDSI | CCRYGG | 1 cut(s) | 873 |
| BstF5I | GGATG | 4 cut(s) | 36, 405, 513, 788 |
| BstFNI | CGCG | 2 cut(s) | 19, 912 |
| BstHHI | GCGC | 5 cut(s) | 6, 19, 449, 480, 914 |
| BstKTI | GATC | 2 cut(s) | 284, 708 |
| BstMAI | GTCTC | 1 cut(s) | 431 |
| BstMBI | GATC | 2 cut(s) | 281, 705 |
| BstMCI | CGRYCG | 1 cut(s) | 52 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 16, 23, 264, 566, 575, 590 |
| BstSCI | CCNGG | 1 cut(s) | 98 |
| BstSFI | CTRYAG | 1 cut(s) | 127 |
| BstUI | CGCG | 2 cut(s) | 19, 912 |
| BstV1I | GCAGC | 1 cut(s) | 141 |
| BstV2I | GAAGAC | 1 cut(s) | 719 |
| BstZI | CGGCCG | 1 cut(s) | 49 |
| BsuI | GTATCC | 1 cut(s) | 446 |
| BsuRI | GGCC | 9 cut(s) | 33, 51, 71, 201, 231, 336, 347, 361, 386 |
| BtgI | CCRYGG | 1 cut(s) | 873 |
| BtrI | CACGTC | 1 cut(s) | 262 |
| BtsCI | GGATG | 4 cut(s) | 36, 405, 513, 788 |
| BveI | ACCTGC | 2 cut(s) | 154, 226 |
| Cac8I | GCNNGC | 5 cut(s) | 8, 28, 53, 229, 552 |
| CciI | TCATGA | 1 cut(s) | 799 |
| CfoI | GCGC | 5 cut(s) | 6, 19, 449, 480, 914 |
| Cfr10I | RCCGGY | 5 cut(s) | 47, 51, 67, 197, 293 |
| Cfr13I | GGNCC | 4 cut(s) | 32, 230, 466, 974 |
| CseI | GACGC | 2 cut(s) | 8, 936 |
| Csp6I | GTAC | 2 cut(s) | 90, 1020 |
| CviAII | CATG | 2 cut(s) | 800, 817 |
| CviQI | GTAC | 2 cut(s) | 90, 1020 |
| DdeI | CTNAG | 2 cut(s) | 882, 945 |
| DpnI | GATC | 2 cut(s) | 283, 707 |
| DpnII | GATC | 2 cut(s) | 281, 705 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 972 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 972 |
| EaeI | YGGCCR | 7 cut(s) | 49, 69, 199, 334, 345, 359, 384 |
| EagI | CGGCCG | 1 cut(s) | 49 |
| EclXI | CGGCCG | 1 cut(s) | 49 |
| Eco130I | CCWWGG | 2 cut(s) | 918, 1030 |
| Eco47I | GGWCC | 2 cut(s) | 466, 974 |
| Eco52I | CGGCCG | 1 cut(s) | 49 |
| EcoO109I | RGGNCCY | 2 cut(s) | 230, 466 |
| EcoT14I | CCWWGG | 2 cut(s) | 918, 1030 |
| ErhI | CCWWGG | 2 cut(s) | 918, 1030 |
| FaeI | CATG | 2 cut(s) | 803, 820 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 407, 439 |
| FaqI | GGGAC | 2 cut(s) | 646, 968 |
| FatI | CATG | 2 cut(s) | 799, 816 |
| Fnu4HI | GCNGC | 2 cut(s) | 31, 130 |
| FokI | GGATG | 4 cut(s) | 23, 412, 500, 795 |
| Fsp4HI | GCNGC | 2 cut(s) | 31, 130 |
| FspBI | CTAG | 4 cut(s) | 434, 525, 867, 963 |
| GlaI | GCGC | 5 cut(s) | 5, 18, 448, 479, 913 |
| GluI | GCNGC | 2 cut(s) | 31, 130 |
| GsaI | CCCAGC | 1 cut(s) | 237 |
| HaeIII | GGCC | 9 cut(s) | 33, 51, 71, 201, 231, 336, 347, 361, 386 |
| HgaI | GACGC | 2 cut(s) | 8, 936 |
| HhaI | GCGC | 5 cut(s) | 6, 19, 449, 480, 914 |
| Hin1II | CATG | 2 cut(s) | 803, 820 |
| Hin6I | GCGC | 5 cut(s) | 4, 17, 447, 478, 912 |
| HinP1I | GCGC | 5 cut(s) | 4, 17, 447, 478, 912 |
| HincII | GTYRAC | 4 cut(s) | 278, 289, 299, 311 |
| HindII | GTYRAC | 4 cut(s) | 278, 289, 299, 311 |
| HinfI | GANTC | 2 cut(s) | 715, 896 |
| HphI | GGTGA | 2 cut(s) | 109, 178 |
| Hpy166II | GTNNAC | 5 cut(s) | 278, 289, 299, 311, 1022 |
| Hpy188I | TCNGA | 4 cut(s) | 531, 643, 765, 895 |
| Hpy188III | TCNNGA | 6 cut(s) | 506, 709, 790, 800, 850, 963 |
| Hpy8I | GTNNAC | 5 cut(s) | 278, 289, 299, 311, 1022 |
| HpyAV | CCTTC | 2 cut(s) | 736, 992 |
| HpyCH4IV | ACGT | 4 cut(s) | 261, 534, 822, 967 |
| HpyCH4V | TGCA | 2 cut(s) | 129, 149 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 16, 23, 264, 566, 575, 590 |
| HpyF3I | CTNAG | 2 cut(s) | 882, 945 |
| HpySE526I | ACGT | 4 cut(s) | 261, 534, 822, 967 |
| Hsp92II | CATG | 2 cut(s) | 803, 820 |
| HspAI | GCGC | 5 cut(s) | 4, 17, 447, 478, 912 |
| KroI | GCCGGC | 1 cut(s) | 51 |
| KroNI | GCCGGC | 1 cut(s) | 53 |
| Kzo9I | GATC | 2 cut(s) | 281, 705 |
| LmnI | GCTCC | 2 cut(s) | 598, 934 |
| Lsp1109I | GCAGC | 1 cut(s) | 141 |
| MaeI | CTAG | 4 cut(s) | 434, 525, 867, 963 |
| MaeII | ACGT | 4 cut(s) | 261, 534, 822, 967 |
| MaeIII | GTNAC | 1 cut(s) | 404 |
| MalI | GATC | 2 cut(s) | 283, 707 |
| MbiI | CCGCTC | 1 cut(s) | 253 |
| MboI | GATC | 2 cut(s) | 281, 705 |
| MboII | GAAGA | 2 cut(s) | 724, 865 |
| MhlI | GDGCHC | 1 cut(s) | 540 |
| MluCI | AATT | 7 cut(s) | 181, 205, 326, 350, 588, 757, 958 |
| MlyI | GAGTC | 2 cut(s) | 709, 905 |
| MroNI | GCCGGC | 1 cut(s) | 51 |
| MroXI | GAANNNNTTC | 1 cut(s) | 648 |
| MseI | TTAA | 3 cut(s) | 395, 489, 1039 |
| MslI | CAYNNNNRTG | 1 cut(s) | 848 |
| MspCI | CTTAAG | 1 cut(s) | 488 |
| MspR9I | CCNGG | 1 cut(s) | 100 |
| MvnI | CGCG | 2 cut(s) | 19, 912 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 16, 23, 264, 566, 575, 590 |
| NaeI | GCCGGC | 1 cut(s) | 53 |
| NciI | CCSGG | 1 cut(s) | 100 |
| NdeII | GATC | 2 cut(s) | 281, 705 |
| NgoMIV | GCCGGC | 1 cut(s) | 51 |
| NlaIII | CATG | 2 cut(s) | 803, 820 |
| NlaIV | GGNNCC | 6 cut(s) | 34, 196, 232, 467, 814, 1028 |
| PagI | TCATGA | 1 cut(s) | 799 |
| PaqCI | CACCTGC | 1 cut(s) | 154 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 934 |
| PdiI | GCCGGC | 1 cut(s) | 53 |
| PdmI | GAANNNNTTC | 1 cut(s) | 648 |
| PkrI | GCNGC | 2 cut(s) | 32, 131 |
| PleI | GAGTC | 2 cut(s) | 709, 904 |
| PpsI | GAGTC | 2 cut(s) | 709, 904 |
| PpuMI | RGGWCCY | 1 cut(s) | 466 |
| PsiI | TTATAA | 1 cut(s) | 636 |
| Psp5II | RGGWCCY | 1 cut(s) | 466 |
| PspFI | CCCAGC | 1 cut(s) | 233 |
| PspN4I | GGNNCC | 6 cut(s) | 34, 196, 232, 467, 814, 1028 |
| PspPI | GGNCC | 4 cut(s) | 32, 230, 466, 974 |
| PspPPI | RGGWCCY | 1 cut(s) | 466 |
| PstI | CTGCAG | 1 cut(s) | 131 |
| RsaI | GTAC | 2 cut(s) | 91, 1021 |
| RsaNI | GTAC | 2 cut(s) | 90, 1020 |
| RseI | CAYNNNNRTG | 1 cut(s) | 848 |
| SaqAI | TTAA | 3 cut(s) | 395, 489, 1039 |
| SatI | GCNGC | 2 cut(s) | 31, 130 |
| Sau3AI | GATC | 2 cut(s) | 281, 705 |
| Sau96I | GGNCC | 4 cut(s) | 32, 230, 466, 974 |
| SchI | GAGTC | 2 cut(s) | 709, 905 |
| ScrFI | CCNGG | 1 cut(s) | 100 |
| SduI | GDGCHC | 1 cut(s) | 540 |
| SfcI | CTRYAG | 1 cut(s) | 127 |
| SinI | GGWCC | 2 cut(s) | 466, 974 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 848 |
| SmlI | CTYRAG | 1 cut(s) | 488 |
| SmoI | CTYRAG | 1 cut(s) | 488 |
| Sse9I | AATT | 7 cut(s) | 181, 205, 326, 350, 588, 757, 958 |
| SsiI | CCGC | 4 cut(s) | 30, 225, 251, 604 |
| SspMI | CTAG | 4 cut(s) | 434, 525, 867, 963 |
| StyD4I | CCNGG | 1 cut(s) | 98 |
| StyI | CCWWGG | 2 cut(s) | 918, 1030 |
| TaiI | ACGT | 4 cut(s) | 264, 537, 825, 970 |
| TaqI | TCGA | 2 cut(s) | 139, 708 |
| TasI | AATT | 7 cut(s) | 181, 205, 326, 350, 588, 757, 958 |
| TauI | GCSGC | 1 cut(s) | 33 |
| Tru1I | TTAA | 3 cut(s) | 395, 489, 1039 |
| Tru9I | TTAA | 3 cut(s) | 395, 489, 1039 |
| TseI | GCWGC | 1 cut(s) | 129 |
| TspDTI | ATGAA | 2 cut(s) | 788, 833 |
| TspGWI | ACGGA | 1 cut(s) | 1039 |
| Vha464I | CTTAAG | 1 cut(s) | 488 |
| VpaK11BI | GGWCC | 2 cut(s) | 466, 974 |
| XapI | RAATTY | 4 cut(s) | 181, 205, 326, 350 |
| XbaI | TCTAGA | 1 cut(s) | 962 |
| XmnI | GAANNNNTTC | 1 cut(s) | 648 |
| XspI | CTAG | 4 cut(s) | 434, 525, 867, 963 |