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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 400 |
| AciI | CCGC | 2 cut(s) | 106, 400 |
| AclWI | GGATC | 1 cut(s) | 296 |
| AcoI | YGGCCR | 1 cut(s) | 454 |
| AcsI | RAATTY | 1 cut(s) | 173 |
| AfaI | GTAC | 1 cut(s) | 150 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 570 |
| AgsI | TTSAA | 2 cut(s) | 121, 505 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 29 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 33, 65 |
| AluBI | AGCT | 4 cut(s) | 307, 329, 590, 641 |
| AluI | AGCT | 4 cut(s) | 307, 329, 590, 641 |
| Alw21I | GWGCWC | 3 cut(s) | 309, 534, 592 |
| Alw26I | GTCTC | 3 cut(s) | 37, 241, 364 |
| AlwI | GGATC | 1 cut(s) | 296 |
| AoxI | GGCC | 2 cut(s) | 15, 454 |
| ApoI | RAATTY | 1 cut(s) | 173 |
| AsuHPI | GGTGA | 1 cut(s) | 598 |
| BaeGI | GKGCMC | 1 cut(s) | 577 |
| BalI | TGGCCA | 1 cut(s) | 456 |
| BanII | GRGCYC | 2 cut(s) | 309, 592 |
| BbsI | GAAGAC | 1 cut(s) | 28 |
| Bbv12I | GWGCWC | 3 cut(s) | 309, 534, 592 |
| BccI | CCATC | 3 cut(s) | 191, 241, 495 |
| BciVI | GTATCC | 1 cut(s) | 571 |
| BcoDI | GTCTC | 3 cut(s) | 37, 241, 364 |
| BfaI | CTAG | 2 cut(s) | 83, 677 |
| BfmI | CTRYAG | 1 cut(s) | 279 |
| BfuI | GTATCC | 1 cut(s) | 571 |
| BmcAI | AGTACT | 1 cut(s) | 150 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 29 |
| BmiI | GGNNCC | 2 cut(s) | 410, 469 |
| BpiI | GAAGAC | 1 cut(s) | 28 |
| Bsa29I | ATCGAT | 1 cut(s) | 270 |
| BsaI | GGTCTC | 2 cut(s) | 37, 364 |
| BsaWI | WCCGGW | 1 cut(s) | 563 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 570 |
| BseCI | ATCGAT | 1 cut(s) | 270 |
| BseGI | GGATG | 2 cut(s) | 345, 487 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 570 |
| BseMII | CTCAG | 2 cut(s) | 519, 527 |
| BseSI | GKGCMC | 1 cut(s) | 577 |
| BshFI | GGCC | 2 cut(s) | 17, 456 |
| BshVI | ATCGAT | 1 cut(s) | 270 |
| BsiHKAI | GWGCWC | 3 cut(s) | 309, 534, 592 |
| BsiSI | CCGG | 1 cut(s) | 564 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 570 |
| BsmAI | GTCTC | 3 cut(s) | 37, 241, 364 |
| BsmBI | CGTCTC | 1 cut(s) | 241 |
| BsnI | GGCC | 2 cut(s) | 17, 456 |
| Bso31I | GGTCTC | 2 cut(s) | 37, 364 |
| Bsp1286I | GDGCHC | 4 cut(s) | 309, 534, 577, 592 |
| Bsp143I | GATC | 3 cut(s) | 288, 661, 673 |
| BspACI | CCGC | 2 cut(s) | 106, 400 |
| BspANI | GGCC | 2 cut(s) | 17, 456 |
| BspCNI | CTCAG | 2 cut(s) | 520, 526 |
| BspDI | ATCGAT | 1 cut(s) | 270 |
| BspHI | TCATGA | 2 cut(s) | 301, 592 |
| BspLI | GGNNCC | 2 cut(s) | 410, 469 |
| BspPI | GGATC | 1 cut(s) | 296 |
| BspTNI | GGTCTC | 2 cut(s) | 37, 364 |
| BsrBI | CCGCTC | 1 cut(s) | 400 |
| BssMI | GATC | 3 cut(s) | 288, 661, 673 |
| Bst4CI | ACNGT | 1 cut(s) | 27 |
| Bst6I | CTCTTC | 2 cut(s) | 6, 409 |
| BstC8I | GCNNGC | 1 cut(s) | 643 |
| BstDEI | CTNAG | 4 cut(s) | 384, 480, 513, 528 |
| BstF5I | GGATG | 2 cut(s) | 345, 487 |
| BstKTI | GATC | 3 cut(s) | 291, 664, 676 |
| BstMAI | GTCTC | 3 cut(s) | 37, 241, 364 |
| BstMBI | GATC | 3 cut(s) | 288, 661, 673 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 638 |
| BstSFI | CTRYAG | 1 cut(s) | 279 |
| BstSLI | GKGCMC | 1 cut(s) | 577 |
| BstV2I | GAAGAC | 1 cut(s) | 28 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 464 |
| Bsu15I | ATCGAT | 1 cut(s) | 270 |
| BsuI | GTATCC | 1 cut(s) | 571 |
| BsuRI | GGCC | 2 cut(s) | 17, 456 |
| BsuTUI | ATCGAT | 1 cut(s) | 270 |
| BtsCI | GGATG | 2 cut(s) | 345, 487 |
| Cac8I | GCNNGC | 1 cut(s) | 643 |
| CciI | TCATGA | 2 cut(s) | 301, 592 |
| ClaI | ATCGAT | 1 cut(s) | 270 |
| CseI | GACGC | 1 cut(s) | 506 |
| Csp6I | GTAC | 1 cut(s) | 149 |
| CviAII | CATG | 6 cut(s) | 93, 302, 338, 376, 458, 593 |
| CviJI | RGCY | 8 cut(s) | 17, 307, 329, 456, 468, 486, 590, 641 |
| CviKI_1 | RGCY | 8 cut(s) | 17, 307, 329, 456, 468, 486, 590, 641 |
| CviQI | GTAC | 1 cut(s) | 149 |
| DdeI | CTNAG | 4 cut(s) | 384, 480, 513, 528 |
| DpnI | GATC | 3 cut(s) | 290, 663, 675 |
| DpnII | GATC | 3 cut(s) | 288, 661, 673 |
| DriI | GACNNNNNGTC | 1 cut(s) | 29 |
| EaeI | YGGCCR | 1 cut(s) | 454 |
| Eam1104I | CTCTTC | 2 cut(s) | 6, 409 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 29 |
| EarI | CTCTTC | 2 cut(s) | 6, 409 |
| Ecl136II | GAGCTC | 2 cut(s) | 307, 590 |
| Eco24I | GRGCYC | 2 cut(s) | 309, 592 |
| Eco31I | GGTCTC | 2 cut(s) | 37, 364 |
| Eco32I | GATATC | 1 cut(s) | 190 |
| Eco53kI | GAGCTC | 2 cut(s) | 307, 590 |
| EcoICRI | GAGCTC | 2 cut(s) | 307, 590 |
| EcoRI | GAATTC | 1 cut(s) | 173 |
| EcoRV | GATATC | 1 cut(s) | 190 |
| EcoT38I | GRGCYC | 2 cut(s) | 309, 592 |
| Esp3I | CGTCTC | 1 cut(s) | 241 |
| FaeI | CATG | 6 cut(s) | 96, 305, 341, 379, 461, 596 |
| FatI | CATG | 6 cut(s) | 92, 301, 337, 375, 457, 592 |
| FokI | GGATG | 2 cut(s) | 332, 474 |
| FriOI | GRGCYC | 2 cut(s) | 309, 592 |
| FspBI | CTAG | 2 cut(s) | 83, 677 |
| HaeIII | GGCC | 2 cut(s) | 17, 456 |
| HapII | CCGG | 1 cut(s) | 564 |
| HgaI | GACGC | 1 cut(s) | 506 |
| Hin1II | CATG | 6 cut(s) | 96, 305, 341, 379, 461, 596 |
| HincII | GTYRAC | 1 cut(s) | 422 |
| HindII | GTYRAC | 1 cut(s) | 422 |
| HinfI | GANTC | 2 cut(s) | 267, 524 |
| HpaII | CCGG | 1 cut(s) | 564 |
| HphI | GGTGA | 1 cut(s) | 598 |
| Hpy166II | GTNNAC | 1 cut(s) | 422 |
| Hpy188I | TCNGA | 3 cut(s) | 145, 397, 529 |
| Hpy188III | TCNNGA | 5 cut(s) | 77, 302, 593, 665, 677 |
| Hpy8I | GTNNAC | 1 cut(s) | 422 |
| HpyAV | CCTTC | 1 cut(s) | 238 |
| HpyCH4III | ACNGT | 1 cut(s) | 27 |
| HpyCH4IV | ACGT | 2 cut(s) | 57, 424 |
| HpyCH4V | TGCA | 2 cut(s) | 156, 254 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 638 |
| HpyF3I | CTNAG | 4 cut(s) | 384, 480, 513, 528 |
| HpySE526I | ACGT | 2 cut(s) | 57, 424 |
| Hsp92II | CATG | 6 cut(s) | 96, 305, 341, 379, 461, 596 |
| Kzo9I | GATC | 3 cut(s) | 288, 661, 673 |
| LmnI | GCTCC | 3 cut(s) | 314, 397, 473 |
| LpnPI | CCDG | 6 cut(s) | 31, 90, 267, 438, 563, 577 |
| MaeI | CTAG | 2 cut(s) | 83, 677 |
| MaeII | ACGT | 2 cut(s) | 57, 424 |
| MaeIII | GTNAC | 4 cut(s) | 62, 88, 274, 604 |
| MalI | GATC | 3 cut(s) | 290, 663, 675 |
| MbiI | CCGCTC | 1 cut(s) | 400 |
| MboI | GATC | 3 cut(s) | 288, 661, 673 |
| MboII | GAAGA | 9 cut(s) | 20, 23, 33, 53, 367, 426, 608, 671, 680 |
| MhlI | GDGCHC | 4 cut(s) | 309, 534, 577, 592 |
| MlsI | TGGCCA | 1 cut(s) | 456 |
| MluCI | AATT | 3 cut(s) | 173, 364, 600 |
| MluNI | TGGCCA | 1 cut(s) | 456 |
| MlyI | GAGTC | 1 cut(s) | 533 |
| MnlI | CCTC | 5 cut(s) | 7, 113, 410, 460, 522 |
| Mox20I | TGGCCA | 1 cut(s) | 456 |
| MscI | TGGCCA | 1 cut(s) | 456 |
| MseI | TTAA | 3 cut(s) | 159, 167, 474 |
| MslI | CAYNNNNRTG | 4 cut(s) | 350, 462, 492, 537 |
| Msp20I | TGGCCA | 1 cut(s) | 456 |
| MspI | CCGG | 1 cut(s) | 564 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 638 |
| NdeII | GATC | 3 cut(s) | 288, 661, 673 |
| NlaIII | CATG | 6 cut(s) | 96, 305, 341, 379, 461, 596 |
| NlaIV | GGNNCC | 2 cut(s) | 410, 469 |
| NmuCI | GTSAC | 2 cut(s) | 62, 604 |
| PagI | TCATGA | 2 cut(s) | 301, 592 |
| PfeI | GAWTC | 1 cut(s) | 267 |
| PleI | GAGTC | 1 cut(s) | 532 |
| PpsI | GAGTC | 1 cut(s) | 532 |
| Psp124BI | GAGCTC | 2 cut(s) | 309, 592 |
| PspN4I | GGNNCC | 2 cut(s) | 410, 469 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 208, 240 |
| RsaI | GTAC | 1 cut(s) | 150 |
| RsaNI | GTAC | 1 cut(s) | 149 |
| RseI | CAYNNNNRTG | 4 cut(s) | 350, 462, 492, 537 |
| SacI | GAGCTC | 2 cut(s) | 309, 592 |
| SaqAI | TTAA | 3 cut(s) | 159, 167, 474 |
| Sau3AI | GATC | 3 cut(s) | 288, 661, 673 |
| ScaI | AGTACT | 1 cut(s) | 150 |
| SchI | GAGTC | 1 cut(s) | 533 |
| SduI | GDGCHC | 4 cut(s) | 309, 534, 577, 592 |
| SfcI | CTRYAG | 1 cut(s) | 279 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 350, 462, 492, 537 |
| Sse9I | AATT | 3 cut(s) | 173, 364, 600 |
| SsiI | CCGC | 2 cut(s) | 106, 400 |
| SspMI | CTAG | 2 cut(s) | 83, 677 |
| SstI | GAGCTC | 2 cut(s) | 309, 592 |
| TaaI | ACNGT | 1 cut(s) | 27 |
| TaiI | ACGT | 2 cut(s) | 60, 427 |
| TaqI | TCGA | 3 cut(s) | 39, 265, 270 |
| TasI | AATT | 3 cut(s) | 173, 364, 600 |
| TatI | WGTACW | 1 cut(s) | 148 |
| TfiI | GAWTC | 1 cut(s) | 267 |
| Tru1I | TTAA | 3 cut(s) | 159, 167, 474 |
| Tru9I | TTAA | 3 cut(s) | 159, 167, 474 |
| TseFI | GTSAC | 2 cut(s) | 62, 604 |
| Tsp45I | GTSAC | 2 cut(s) | 62, 604 |
| TspDTI | ATGAA | 5 cut(s) | 17, 21, 290, 555, 609 |
| TspGWI | ACGGA | 4 cut(s) | 50, 223, 301, 421 |
| XapI | RAATTY | 1 cut(s) | 173 |
| XbaI | TCTAGA | 1 cut(s) | 676 |
| XspI | CTAG | 2 cut(s) | 83, 677 |
| ZrmI | AGTACT | 1 cut(s) | 150 |