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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 462 |
| AarI | CACCTGC | 1 cut(s) | 114 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 96, 798 |
| Acc36I | ACCTGC | 1 cut(s) | 114 |
| AccB1I | GGYRCC | 1 cut(s) | 638 |
| AccII | CGCG | 2 cut(s) | 401, 738 |
| AccIII | TCCGGA | 1 cut(s) | 718 |
| AciI | CCGC | 3 cut(s) | 24, 109, 430 |
| AcoI | YGGCCR | 5 cut(s) | 128, 180, 203, 238, 264 |
| AcsI | RAATTY | 1 cut(s) | 29 |
| AcvI | CACGTG | 1 cut(s) | 9 |
| AcyI | GRCGYC | 2 cut(s) | 59, 639 |
| AfaI | GTAC | 1 cut(s) | 662 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 189, 749, 820 |
| AflII | CTTAAG | 1 cut(s) | 770 |
| AflIII | ACRYGT | 1 cut(s) | 855 |
| AgsI | TTSAA | 4 cut(s) | 350, 407, 445, 579 |
| AjiI | CACGTC | 2 cut(s) | 78, 98 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 308, 340 |
| AluBI | AGCT | 6 cut(s) | 296, 338, 362, 473, 631, 653 |
| AluI | AGCT | 6 cut(s) | 296, 338, 362, 473, 631, 653 |
| Alw21I | GWGCWC | 2 cut(s) | 324, 850 |
| Alw26I | GTCTC | 2 cut(s) | 492, 565 |
| Alw44I | GTGCAC | 1 cut(s) | 846 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 106 |
| Aor13HI | TCCGGA | 1 cut(s) | 718 |
| AoxI | GGCC | 5 cut(s) | 128, 180, 203, 238, 264 |
| ApaLI | GTGCAC | 1 cut(s) | 846 |
| ApoI | RAATTY | 1 cut(s) | 29 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 218, 250 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 474 |
| AspLEI | GCGC | 3 cut(s) | 403, 641, 740 |
| AspS9I | GGNCC | 1 cut(s) | 800 |
| AsuHPI | GGTGA | 1 cut(s) | 803 |
| AvaII | GGWCC | 1 cut(s) | 800 |
| BaeGI | GKGCMC | 1 cut(s) | 850 |
| BanI | GGYRCC | 1 cut(s) | 638 |
| BanII | GRGCYC | 1 cut(s) | 6 |
| BauI | CACGAG | 2 cut(s) | 616, 674 |
| BbrPI | CACGTG | 1 cut(s) | 9 |
| BbsI | GAAGAC | 1 cut(s) | 545 |
| Bbv12I | GWGCWC | 2 cut(s) | 324, 850 |
| BccI | CCATC | 5 cut(s) | 164, 214, 275, 377, 487 |
| BceAI | ACGGC | 1 cut(s) | 143 |
| BcoDI | GTCTC | 2 cut(s) | 492, 565 |
| BfaI | CTAG | 3 cut(s) | 290, 309, 693 |
| BfmI | CTRYAG | 2 cut(s) | 210, 730 |
| BfoI | RGCGCY | 1 cut(s) | 642 |
| BfrI | CTTAAG | 1 cut(s) | 770 |
| BfuAI | ACCTGC | 1 cut(s) | 114 |
| BisI | GCNGC | 1 cut(s) | 24 |
| BlsI | GCNGC | 1 cut(s) | 25 |
| Bme18I | GGWCC | 1 cut(s) | 800 |
| BmgBI | CACGTC | 2 cut(s) | 78, 98 |
| BmgT120I | GGNCC | 1 cut(s) | 800 |
| BmiI | GGNNCC | 1 cut(s) | 640 |
| BmsI | GCATC | 2 cut(s) | 21, 441 |
| BpiI | GAAGAC | 1 cut(s) | 545 |
| BsaAI | YACGTR | 1 cut(s) | 9 |
| BsaHI | GRCGYC | 2 cut(s) | 59, 639 |
| BsaJI | CCNNGG | 2 cut(s) | 699, 744 |
| BsaWI | WCCGGW | 1 cut(s) | 718 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 308, 338 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 189, 749, 820 |
| Bse118I | RCCGGY | 1 cut(s) | 140 |
| Bse1I | ACTGG | 2 cut(s) | 63, 131 |
| BseAI | TCCGGA | 1 cut(s) | 718 |
| BseDI | CCNNGG | 2 cut(s) | 699, 744 |
| BseGI | GGATG | 1 cut(s) | 83 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 189, 749, 820 |
| BseNI | ACTGG | 2 cut(s) | 63, 131 |
| BseSI | GKGCMC | 1 cut(s) | 850 |
| Bsh1236I | CGCG | 2 cut(s) | 401, 738 |
| BshFI | GGCC | 5 cut(s) | 130, 182, 205, 240, 266 |
| BshNI | GGYRCC | 1 cut(s) | 638 |
| BsiHKAI | GWGCWC | 2 cut(s) | 324, 850 |
| BsiSI | CCGG | 7 cut(s) | 141, 179, 190, 202, 222, 263, 719 |
| BslFI | GGGAC | 1 cut(s) | 794 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 189, 749, 820 |
| BsmAI | GTCTC | 2 cut(s) | 492, 565 |
| BsmBI | CGTCTC | 1 cut(s) | 565 |
| BsmFI | GGGAC | 1 cut(s) | 794 |
| BsnI | GGCC | 5 cut(s) | 130, 182, 205, 240, 266 |
| Bsp1286I | GDGCHC | 3 cut(s) | 6, 324, 850 |
| Bsp13I | TCCGGA | 1 cut(s) | 718 |
| Bsp143I | GATC | 1 cut(s) | 531 |
| BspACI | CCGC | 3 cut(s) | 24, 109, 430 |
| BspANI | GGCC | 5 cut(s) | 130, 182, 205, 240, 266 |
| BspEI | TCCGGA | 1 cut(s) | 718 |
| BspFNI | CGCG | 2 cut(s) | 401, 738 |
| BspHI | TCATGA | 2 cut(s) | 378, 625 |
| BspLI | GGNNCC | 1 cut(s) | 640 |
| BspMI | ACCTGC | 1 cut(s) | 114 |
| BspQI | GCTCTTC | 1 cut(s) | 480 |
| BspT107I | GGYRCC | 1 cut(s) | 638 |
| BspTI | CTTAAG | 1 cut(s) | 770 |
| BsrFI | RCCGGY | 1 cut(s) | 140 |
| BsrI | ACTGG | 2 cut(s) | 63, 131 |
| BssAI | RCCGGY | 1 cut(s) | 140 |
| BssECI | CCNNGG | 2 cut(s) | 699, 744 |
| BssMI | GATC | 1 cut(s) | 531 |
| BssNI | GRCGYC | 2 cut(s) | 59, 639 |
| BssSI | CACGAG | 2 cut(s) | 616, 674 |
| BssT1I | CCWWGG | 1 cut(s) | 744 |
| Bst2BI | CACGAG | 2 cut(s) | 616, 674 |
| Bst4CI | ACNGT | 1 cut(s) | 214 |
| Bst6I | CTCTTC | 1 cut(s) | 480 |
| BstACI | GRCGYC | 2 cut(s) | 59, 639 |
| BstAFI | CTTAAG | 1 cut(s) | 770 |
| BstBAI | YACGTR | 1 cut(s) | 9 |
| BstC8I | GCNNGC | 3 cut(s) | 57, 72, 846 |
| BstDEI | CTNAG | 1 cut(s) | 708 |
| BstDSI | CCRYGG | 1 cut(s) | 699 |
| BstF5I | GGATG | 1 cut(s) | 83 |
| BstFNI | CGCG | 2 cut(s) | 401, 738 |
| BstH2I | RGCGCY | 1 cut(s) | 642 |
| BstHHI | GCGC | 3 cut(s) | 403, 641, 740 |
| BstKTI | GATC | 1 cut(s) | 534 |
| BstMAI | GTCTC | 2 cut(s) | 492, 565 |
| BstMBI | GATC | 1 cut(s) | 531 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 44, 100, 350, 359 |
| BstNSI | RCATGY | 1 cut(s) | 859 |
| BstSFI | CTRYAG | 2 cut(s) | 210, 730 |
| BstSLI | GKGCMC | 1 cut(s) | 850 |
| BstUI | CGCG | 2 cut(s) | 401, 738 |
| BstV2I | GAAGAC | 1 cut(s) | 545 |
| BsuRI | GGCC | 5 cut(s) | 130, 182, 205, 240, 266 |
| BtgI | CCRYGG | 1 cut(s) | 699 |
| BtrI | CACGTC | 2 cut(s) | 78, 98 |
| BtsCI | GGATG | 1 cut(s) | 83 |
| BveI | ACCTGC | 1 cut(s) | 114 |
| Cac8I | GCNNGC | 3 cut(s) | 57, 72, 846 |
| CaiI | CAGNNNCTG | 1 cut(s) | 106 |
| CciI | TCATGA | 2 cut(s) | 378, 625 |
| CfoI | GCGC | 3 cut(s) | 403, 641, 740 |
| Cfr10I | RCCGGY | 1 cut(s) | 140 |
| Cfr13I | GGNCC | 1 cut(s) | 800 |
| CseI | GACGC | 5 cut(s) | 36, 48, 407, 762, 801 |
| Csp6I | GTAC | 1 cut(s) | 661 |
| CviAII | CATG | 5 cut(s) | 379, 391, 626, 643, 856 |
| CviQI | GTAC | 1 cut(s) | 661 |
| DdeI | CTNAG | 1 cut(s) | 708 |
| DinI | GGCGCC | 1 cut(s) | 640 |
| DpnI | GATC | 1 cut(s) | 533 |
| DpnII | GATC | 1 cut(s) | 531 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 96, 798 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 96, 798 |
| EaeI | YGGCCR | 5 cut(s) | 128, 180, 203, 238, 264 |
| Eam1104I | CTCTTC | 1 cut(s) | 480 |
| EarI | CTCTTC | 1 cut(s) | 480 |
| Eco130I | CCWWGG | 1 cut(s) | 744 |
| Eco24I | GRGCYC | 1 cut(s) | 6 |
| Eco47I | GGWCC | 1 cut(s) | 800 |
| Eco72I | CACGTG | 1 cut(s) | 9 |
| EcoRI | GAATTC | 1 cut(s) | 29 |
| EcoT14I | CCWWGG | 1 cut(s) | 744 |
| EcoT38I | GRGCYC | 1 cut(s) | 6 |
| EgeI | GGCGCC | 1 cut(s) | 640 |
| EheI | GGCGCC | 1 cut(s) | 640 |
| ErhI | CCWWGG | 1 cut(s) | 744 |
| Esp3I | CGTCTC | 1 cut(s) | 565 |
| FaeI | CATG | 5 cut(s) | 382, 394, 629, 646, 859 |
| FaqI | GGGAC | 1 cut(s) | 794 |
| FatI | CATG | 5 cut(s) | 378, 390, 625, 642, 855 |
| Fnu4HI | GCNGC | 1 cut(s) | 24 |
| FokI | GGATG | 1 cut(s) | 70 |
| FriOI | GRGCYC | 1 cut(s) | 6 |
| Fsp4HI | GCNGC | 1 cut(s) | 24 |
| FspBI | CTAG | 3 cut(s) | 290, 309, 693 |
| GlaI | GCGC | 3 cut(s) | 402, 640, 739 |
| GluI | GCNGC | 1 cut(s) | 24 |
| HaeII | RGCGCY | 1 cut(s) | 642 |
| HaeIII | GGCC | 5 cut(s) | 130, 182, 205, 240, 266 |
| HapII | CCGG | 7 cut(s) | 141, 179, 190, 202, 222, 263, 719 |
| HgaI | GACGC | 5 cut(s) | 36, 48, 407, 762, 801 |
| HhaI | GCGC | 3 cut(s) | 403, 641, 740 |
| Hin1I | GRCGYC | 2 cut(s) | 59, 639 |
| Hin1II | CATG | 5 cut(s) | 382, 394, 629, 646, 859 |
| Hin6I | GCGC | 3 cut(s) | 401, 639, 738 |
| HinP1I | GCGC | 3 cut(s) | 401, 639, 738 |
| HincII | GTYRAC | 3 cut(s) | 114, 125, 146 |
| HindII | GTYRAC | 3 cut(s) | 114, 125, 146 |
| HinfI | GANTC | 2 cut(s) | 541, 722 |
| HpaII | CCGG | 7 cut(s) | 141, 179, 190, 202, 222, 263, 719 |
| HphI | GGTGA | 1 cut(s) | 803 |
| Hpy166II | GTNNAC | 5 cut(s) | 51, 114, 125, 146, 848 |
| Hpy188I | TCNGA | 4 cut(s) | 315, 469, 492, 591 |
| Hpy188III | TCNNGA | 9 cut(s) | 87, 290, 379, 535, 616, 626, 676, 719, 789 |
| Hpy8I | GTNNAC | 5 cut(s) | 51, 114, 125, 146, 848 |
| HpyAV | CCTTC | 2 cut(s) | 562, 818 |
| HpyCH4III | ACNGT | 1 cut(s) | 214 |
| HpyCH4IV | ACGT | 6 cut(s) | 8, 77, 97, 318, 610, 648 |
| HpyCH4V | TGCA | 2 cut(s) | 12, 848 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 44, 100, 350, 359 |
| HpyF3I | CTNAG | 1 cut(s) | 708 |
| HpySE526I | ACGT | 6 cut(s) | 8, 77, 97, 318, 610, 648 |
| Hsp92I | GRCGYC | 2 cut(s) | 59, 639 |
| Hsp92II | CATG | 5 cut(s) | 382, 394, 629, 646, 859 |
| HspAI | GCGC | 3 cut(s) | 401, 639, 738 |
| KasI | GGCGCC | 1 cut(s) | 638 |
| Kpn2I | TCCGGA | 1 cut(s) | 718 |
| Kzo9I | GATC | 1 cut(s) | 531 |
| LguI | GCTCTTC | 1 cut(s) | 480 |
| LmnI | GCTCC | 1 cut(s) | 760 |
| LweI | GCATC | 2 cut(s) | 21, 441 |
| MaeI | CTAG | 3 cut(s) | 290, 309, 693 |
| MaeII | ACGT | 6 cut(s) | 8, 77, 97, 318, 610, 648 |
| MaeIII | GTNAC | 2 cut(s) | 214, 503 |
| MalI | GATC | 1 cut(s) | 533 |
| MboI | GATC | 1 cut(s) | 531 |
| MboII | GAAGA | 3 cut(s) | 467, 550, 691 |
| MhlI | GDGCHC | 3 cut(s) | 6, 324, 850 |
| MluCI | AATT | 4 cut(s) | 29, 242, 583, 784 |
| Mly113I | GGCGCC | 1 cut(s) | 639 |
| MlyI | GAGTC | 2 cut(s) | 535, 731 |
| MnlI | CCTC | 6 cut(s) | 127, 437, 612, 743, 814, 834 |
| MroI | TCCGGA | 1 cut(s) | 718 |
| MroXI | GAANNNNTTC | 1 cut(s) | 474 |
| MseI | TTAA | 3 cut(s) | 254, 273, 771 |
| MslI | CAYNNNNRTG | 3 cut(s) | 377, 393, 674 |
| MspCI | CTTAAG | 1 cut(s) | 770 |
| MspI | CCGG | 7 cut(s) | 141, 179, 190, 202, 222, 263, 719 |
| MvnI | CGCG | 2 cut(s) | 401, 738 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 44, 100, 350, 359 |
| NarI | GGCGCC | 1 cut(s) | 639 |
| NdeII | GATC | 1 cut(s) | 531 |
| NlaIII | CATG | 5 cut(s) | 382, 394, 629, 646, 859 |
| NlaIV | GGNNCC | 1 cut(s) | 640 |
| NmuCI | GTSAC | 1 cut(s) | 503 |
| NspI | RCATGY | 1 cut(s) | 859 |
| PagI | TCATGA | 2 cut(s) | 378, 625 |
| PaqCI | CACCTGC | 1 cut(s) | 114 |
| PciI | ACATGT | 1 cut(s) | 855 |
| PciSI | GCTCTTC | 1 cut(s) | 480 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 760 |
| PdmI | GAANNNNTTC | 1 cut(s) | 474 |
| PkrI | GCNGC | 1 cut(s) | 25 |
| PleI | GAGTC | 2 cut(s) | 535, 730 |
| PluTI | GGCGCC | 1 cut(s) | 642 |
| PmaCI | CACGTG | 1 cut(s) | 9 |
| PmlI | CACGTG | 1 cut(s) | 9 |
| PpsI | GAGTC | 2 cut(s) | 535, 730 |
| Ppu21I | YACGTR | 1 cut(s) | 9 |
| PscI | ACATGT | 1 cut(s) | 855 |
| PsiI | TTATAA | 1 cut(s) | 462 |
| PspCI | CACGTG | 1 cut(s) | 9 |
| PspN4I | GGNNCC | 1 cut(s) | 640 |
| PspPI | GGNCC | 1 cut(s) | 800 |
| PstNI | CAGNNNCTG | 1 cut(s) | 106 |
| RsaI | GTAC | 1 cut(s) | 662 |
| RsaNI | GTAC | 1 cut(s) | 661 |
| RseI | CAYNNNNRTG | 3 cut(s) | 377, 393, 674 |
| SapI | GCTCTTC | 1 cut(s) | 480 |
| SaqAI | TTAA | 3 cut(s) | 254, 273, 771 |
| SatI | GCNGC | 1 cut(s) | 24 |
| Sau3AI | GATC | 1 cut(s) | 531 |
| Sau96I | GGNCC | 1 cut(s) | 800 |
| SchI | GAGTC | 2 cut(s) | 535, 731 |
| SduI | GDGCHC | 3 cut(s) | 6, 324, 850 |
| SfaNI | GCATC | 2 cut(s) | 21, 441 |
| SfcI | CTRYAG | 2 cut(s) | 210, 730 |
| SfoI | GGCGCC | 1 cut(s) | 640 |
| SinI | GGWCC | 1 cut(s) | 800 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 377, 393, 674 |
| SmlI | CTYRAG | 1 cut(s) | 770 |
| SmoI | CTYRAG | 1 cut(s) | 770 |
| Sse9I | AATT | 4 cut(s) | 29, 242, 583, 784 |
| SsiI | CCGC | 3 cut(s) | 24, 109, 430 |
| SspDI | GGCGCC | 1 cut(s) | 638 |
| SspI | AATATT | 1 cut(s) | 528 |
| SspMI | CTAG | 3 cut(s) | 290, 309, 693 |
| StyI | CCWWGG | 1 cut(s) | 744 |
| TaaI | ACNGT | 1 cut(s) | 214 |
| TaiI | ACGT | 6 cut(s) | 11, 80, 100, 321, 613, 651 |
| TaqI | TCGA | 2 cut(s) | 159, 534 |
| TasI | AATT | 4 cut(s) | 29, 242, 583, 784 |
| TauI | GCSGC | 1 cut(s) | 26 |
| Tru1I | TTAA | 3 cut(s) | 254, 273, 771 |
| Tru9I | TTAA | 3 cut(s) | 254, 273, 771 |
| TseFI | GTSAC | 1 cut(s) | 503 |
| Tsp45I | GTSAC | 1 cut(s) | 503 |
| TspDTI | ATGAA | 3 cut(s) | 407, 614, 659 |
| Vha464I | CTTAAG | 1 cut(s) | 770 |
| VneI | GTGCAC | 1 cut(s) | 846 |
| VpaK11BI | GGWCC | 1 cut(s) | 800 |
| XapI | RAATTY | 1 cut(s) | 29 |
| XbaI | TCTAGA | 1 cut(s) | 289 |
| XceI | RCATGY | 1 cut(s) | 859 |
| XmnI | GAANNNNTTC | 1 cut(s) | 474 |
| XspI | CTAG | 3 cut(s) | 290, 309, 693 |