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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 298 |
| AccII | CGCG | 1 cut(s) | 239 |
| AciI | CCGC | 3 cut(s) | 263, 298, 361 |
| AclI | AACGTT | 1 cut(s) | 312 |
| AclWI | GGATC | 3 cut(s) | 97, 109, 110 |
| AcsI | RAATTY | 1 cut(s) | 428 |
| AcuI | CTGAAG | 1 cut(s) | 117 |
| AfaI | GTAC | 2 cut(s) | 254, 384 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 64, 262 |
| AflII | CTTAAG | 1 cut(s) | 89 |
| AgsI | TTSAA | 2 cut(s) | 167, 376 |
| AjiI | CACGTC | 2 cut(s) | 76, 136 |
| AluBI | AGCT | 3 cut(s) | 24, 155, 179 |
| AluI | AGCT | 3 cut(s) | 24, 155, 179 |
| Alw26I | GTCTC | 2 cut(s) | 32, 495 |
| AlwI | GGATC | 3 cut(s) | 97, 109, 110 |
| Ama87I | CYCGRG | 1 cut(s) | 293 |
| AoxI | GGCC | 1 cut(s) | 204 |
| ApeKI | GCWGC | 2 cut(s) | 155, 158 |
| ApoI | RAATTY | 1 cut(s) | 428 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 112, 144 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 405 |
| AspLEI | GCGC | 2 cut(s) | 81, 241 |
| AspS9I | GGNCC | 1 cut(s) | 67 |
| AvaI | CYCGRG | 1 cut(s) | 293 |
| AvaII | GGWCC | 1 cut(s) | 67 |
| BamHI | GGATCC | 1 cut(s) | 102 |
| BbsI | GAAGAC | 1 cut(s) | 476 |
| BbvI | GCAGC | 2 cut(s) | 142, 145 |
| BccI | CCATC | 2 cut(s) | 342, 418 |
| BciVI | GTATCC | 1 cut(s) | 47 |
| BcoDI | GTCTC | 2 cut(s) | 32, 495 |
| BfaI | CTAG | 1 cut(s) | 35 |
| BfrI | CTTAAG | 1 cut(s) | 89 |
| BfuI | GTATCC | 1 cut(s) | 47 |
| BisI | GCNGC | 3 cut(s) | 156, 159, 299 |
| BlsI | GCNGC | 3 cut(s) | 157, 160, 300 |
| Bme18I | GGWCC | 1 cut(s) | 67 |
| BmeT110I | CYCGRG | 1 cut(s) | 293 |
| BmgBI | CACGTC | 2 cut(s) | 76, 136 |
| BmgT120I | GGNCC | 1 cut(s) | 67 |
| BmiI | GGNNCC | 2 cut(s) | 68, 104 |
| BmsI | GCATC | 1 cut(s) | 94 |
| BpiI | GAAGAC | 1 cut(s) | 476 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 13, 45 |
| BsaBI | GATNNNNATC | 1 cut(s) | 461 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 64, 262 |
| Bse8I | GATNNNNATC | 1 cut(s) | 461 |
| BseJI | GATNNNNATC | 1 cut(s) | 461 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 64, 262 |
| BseMII | CTCAG | 1 cut(s) | 98 |
| BseRI | GAGGAG | 1 cut(s) | 135 |
| BseXI | GCAGC | 2 cut(s) | 142, 145 |
| Bsh1236I | CGCG | 1 cut(s) | 239 |
| BshFI | GGCC | 1 cut(s) | 206 |
| BsiHKCI | CYCGRG | 1 cut(s) | 293 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 64, 262 |
| BsmAI | GTCTC | 2 cut(s) | 32, 495 |
| BsmBI | CGTCTC | 1 cut(s) | 495 |
| BsnI | GGCC | 1 cut(s) | 206 |
| BsoBI | CYCGRG | 1 cut(s) | 293 |
| Bsp143I | GATC | 3 cut(s) | 102, 114, 462 |
| BspACI | CCGC | 3 cut(s) | 263, 298, 361 |
| BspANI | GGCC | 1 cut(s) | 206 |
| BspCNI | CTCAG | 1 cut(s) | 99 |
| BspFNI | CGCG | 1 cut(s) | 239 |
| BspHI | TCATGA | 2 cut(s) | 216, 316 |
| BspLI | GGNNCC | 2 cut(s) | 68, 104 |
| BspPI | GGATC | 3 cut(s) | 97, 109, 110 |
| BspTI | CTTAAG | 1 cut(s) | 89 |
| BsrBI | CCGCTC | 1 cut(s) | 298 |
| BssMI | GATC | 3 cut(s) | 102, 114, 462 |
| BstAFI | CTTAAG | 1 cut(s) | 89 |
| BstC8I | GCNNGC | 1 cut(s) | 83 |
| BstDEI | CTNAG | 2 cut(s) | 107, 337 |
| BstFNI | CGCG | 1 cut(s) | 239 |
| BstHHI | GCGC | 2 cut(s) | 81, 241 |
| BstKTI | GATC | 3 cut(s) | 105, 117, 465 |
| BstMAI | GTCTC | 2 cut(s) | 32, 495 |
| BstMBI | GATC | 3 cut(s) | 102, 114, 462 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 197 |
| BstUI | CGCG | 1 cut(s) | 239 |
| BstV1I | GCAGC | 2 cut(s) | 142, 145 |
| BstV2I | GAAGAC | 1 cut(s) | 476 |
| BstX2I | RGATCY | 1 cut(s) | 102 |
| BstYI | RGATCY | 1 cut(s) | 102 |
| BsuI | GTATCC | 1 cut(s) | 47 |
| BsuRI | GGCC | 1 cut(s) | 206 |
| BtrI | CACGTC | 2 cut(s) | 76, 136 |
| BtsIMutI | CAGTG | 1 cut(s) | 447 |
| Cac8I | GCNNGC | 1 cut(s) | 83 |
| CciI | TCATGA | 2 cut(s) | 216, 316 |
| CfoI | GCGC | 2 cut(s) | 81, 241 |
| Cfr13I | GGNCC | 1 cut(s) | 67 |
| CseI | GACGC | 1 cut(s) | 245 |
| Csp6I | GTAC | 2 cut(s) | 253, 383 |
| CviAII | CATG | 3 cut(s) | 217, 229, 317 |
| CviJI | RGCY | 8 cut(s) | 24, 95, 124, 155, 179, 191, 206, 357 |
| CviKI_1 | RGCY | 8 cut(s) | 24, 95, 124, 155, 179, 191, 206, 357 |
| CviQI | GTAC | 2 cut(s) | 253, 383 |
| DdeI | CTNAG | 2 cut(s) | 107, 337 |
| DpnI | GATC | 3 cut(s) | 104, 116, 464 |
| DpnII | GATC | 3 cut(s) | 102, 114, 462 |
| Eco47I | GGWCC | 1 cut(s) | 67 |
| Eco57I | CTGAAG | 1 cut(s) | 117 |
| Eco88I | CYCGRG | 1 cut(s) | 293 |
| EcoRI | GAATTC | 1 cut(s) | 428 |
| Esp3I | CGTCTC | 1 cut(s) | 495 |
| FaeI | CATG | 3 cut(s) | 220, 232, 320 |
| FaiI | YATR | 7 cut(s) | 113, 209, 218, 230, 283, 318, 354 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 8, 40 |
| FatI | CATG | 3 cut(s) | 216, 228, 316 |
| Fnu4HI | GCNGC | 3 cut(s) | 156, 159, 299 |
| Fsp4HI | GCNGC | 3 cut(s) | 156, 159, 299 |
| FspBI | CTAG | 1 cut(s) | 35 |
| GlaI | GCGC | 2 cut(s) | 80, 240 |
| GluI | GCNGC | 3 cut(s) | 156, 159, 299 |
| HaeIII | GGCC | 1 cut(s) | 206 |
| HgaI | GACGC | 1 cut(s) | 245 |
| HhaI | GCGC | 2 cut(s) | 81, 241 |
| Hin1II | CATG | 3 cut(s) | 220, 232, 320 |
| Hin6I | GCGC | 2 cut(s) | 79, 239 |
| HinP1I | GCGC | 2 cut(s) | 79, 239 |
| HinfI | GANTC | 2 cut(s) | 320, 472 |
| Hpy166II | GTNNAC | 1 cut(s) | 437 |
| Hpy188I | TCNGA | 1 cut(s) | 400 |
| Hpy188III | TCNNGA | 6 cut(s) | 106, 131, 217, 317, 332, 466 |
| Hpy8I | GTNNAC | 1 cut(s) | 437 |
| HpyAV | CCTTC | 2 cut(s) | 92, 493 |
| HpyCH4IV | ACGT | 3 cut(s) | 75, 135, 312 |
| HpyCH4V | TGCA | 1 cut(s) | 496 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 197 |
| HpyF3I | CTNAG | 2 cut(s) | 107, 337 |
| HpySE526I | ACGT | 3 cut(s) | 75, 135, 312 |
| Hsp92II | CATG | 3 cut(s) | 220, 232, 320 |
| HspAI | GCGC | 2 cut(s) | 79, 239 |
| Kzo9I | GATC | 3 cut(s) | 102, 114, 462 |
| LmnI | GCTCC | 2 cut(s) | 34, 246 |
| LpnPI | CCDG | 6 cut(s) | 23, 36, 95, 116, 119, 345 |
| Lsp1109I | GCAGC | 2 cut(s) | 142, 145 |
| LweI | GCATC | 1 cut(s) | 94 |
| MaeI | CTAG | 1 cut(s) | 35 |
| MaeII | ACGT | 3 cut(s) | 75, 135, 312 |
| MaeIII | GTNAC | 2 cut(s) | 5, 71 |
| MalI | GATC | 3 cut(s) | 104, 116, 464 |
| MbiI | CCGCTC | 1 cut(s) | 298 |
| MboI | GATC | 3 cut(s) | 102, 114, 462 |
| MboII | GAAGA | 2 cut(s) | 179, 481 |
| MflI | RGATCY | 1 cut(s) | 102 |
| MluCI | AATT | 3 cut(s) | 210, 394, 428 |
| MlyI | GAGTC | 1 cut(s) | 466 |
| MnlI | CCTC | 4 cut(s) | 156, 181, 266, 368 |
| MroXI | GAANNNNTTC | 1 cut(s) | 405 |
| MseI | TTAA | 1 cut(s) | 90 |
| MslI | CAYNNNNRTG | 1 cut(s) | 231 |
| MspCI | CTTAAG | 1 cut(s) | 89 |
| MvnI | CGCG | 1 cut(s) | 239 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 197 |
| NdeII | GATC | 3 cut(s) | 102, 114, 462 |
| NlaIII | CATG | 3 cut(s) | 220, 232, 320 |
| NlaIV | GGNNCC | 2 cut(s) | 68, 104 |
| NmuCI | GTSAC | 1 cut(s) | 71 |
| PaeR7I | CTCGAG | 1 cut(s) | 293 |
| PagI | TCATGA | 2 cut(s) | 216, 316 |
| PdmI | GAANNNNTTC | 1 cut(s) | 405 |
| PfeI | GAWTC | 1 cut(s) | 320 |
| PkrI | GCNGC | 3 cut(s) | 157, 160, 300 |
| PleI | GAGTC | 1 cut(s) | 466 |
| PpsI | GAGTC | 1 cut(s) | 466 |
| Psp1406I | AACGTT | 1 cut(s) | 312 |
| PspN4I | GGNNCC | 2 cut(s) | 68, 104 |
| PspPI | GGNCC | 1 cut(s) | 67 |
| PspXI | VCTCGAGB | 1 cut(s) | 293 |
| PsuI | RGATCY | 1 cut(s) | 102 |
| RsaI | GTAC | 2 cut(s) | 254, 384 |
| RsaNI | GTAC | 2 cut(s) | 253, 383 |
| RseI | CAYNNNNRTG | 1 cut(s) | 231 |
| SaqAI | TTAA | 1 cut(s) | 90 |
| SatI | GCNGC | 3 cut(s) | 156, 159, 299 |
| Sau3AI | GATC | 3 cut(s) | 102, 114, 462 |
| Sau96I | GGNCC | 1 cut(s) | 67 |
| SchI | GAGTC | 1 cut(s) | 466 |
| SetI | ASST | 9 cut(s) | 12, 26, 78, 138, 157, 181, 258, 315, 485 |
| SfaNI | GCATC | 1 cut(s) | 94 |
| Sfr274I | CTCGAG | 1 cut(s) | 293 |
| SinI | GGWCC | 1 cut(s) | 67 |
| SlaI | CTCGAG | 1 cut(s) | 293 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 231 |
| SmlI | CTYRAG | 2 cut(s) | 89, 293 |
| SmoI | CTYRAG | 2 cut(s) | 89, 293 |
| Sse9I | AATT | 3 cut(s) | 210, 394, 428 |
| SsiI | CCGC | 3 cut(s) | 263, 298, 361 |
| SspMI | CTAG | 1 cut(s) | 35 |
| TaiI | ACGT | 3 cut(s) | 78, 138, 315 |
| TaqI | TCGA | 2 cut(s) | 294, 465 |
| TasI | AATT | 3 cut(s) | 210, 394, 428 |
| TatI | WGTACW | 1 cut(s) | 382 |
| TauI | GCSGC | 1 cut(s) | 301 |
| TfiI | GAWTC | 1 cut(s) | 320 |
| Tru1I | TTAA | 1 cut(s) | 90 |
| Tru9I | TTAA | 1 cut(s) | 90 |
| TscAI | CASTG | 1 cut(s) | 454 |
| TseFI | GTSAC | 1 cut(s) | 71 |
| TseI | GCWGC | 2 cut(s) | 155, 158 |
| Tsp45I | GTSAC | 1 cut(s) | 71 |
| TspDTI | ATGAA | 3 cut(s) | 210, 245, 305 |
| TspGWI | ACGGA | 1 cut(s) | 59 |
| TspRI | CASTG | 1 cut(s) | 454 |
| Vha464I | CTTAAG | 1 cut(s) | 89 |
| VpaK11BI | GGWCC | 1 cut(s) | 67 |
| XapI | RAATTY | 1 cut(s) | 428 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 279 |
| XhoI | CTCGAG | 1 cut(s) | 293 |
| XmnI | GAANNNNTTC | 1 cut(s) | 405 |
| XspI | CTAG | 1 cut(s) | 35 |