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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 792 |
| AccB1I | GGYRCC | 5 cut(s) | 751, 905, 918, 1310, 1403 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1238 |
| AciI | CCGC | 4 cut(s) | 220, 922, 1156, 1202 |
| AclWI | GGATC | 2 cut(s) | 90, 121 |
| AcoI | YGGCCR | 1 cut(s) | 892 |
| AcsI | RAATTY | 4 cut(s) | 25, 569, 1141, 1416 |
| AcuI | CTGAAG | 1 cut(s) | 75 |
| AcyI | GRCGYC | 3 cut(s) | 906, 981, 1311 |
| AfaI | GTAC | 2 cut(s) | 90, 389 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 915, 947, 1175, 1238, 1362 |
| AgsI | TTSAA | 5 cut(s) | 31, 517, 1034, 1047, 1146 |
| AjiI | CACGTC | 1 cut(s) | 277 |
| AjnI | CCWGG | 1 cut(s) | 270 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 429, 461, 1383, 1415 |
| AleI | CACNNNNGTG | 1 cut(s) | 507 |
| AluBI | AGCT | 6 cut(s) | 59, 296, 302, 703, 713, 1361 |
| AluI | AGCT | 6 cut(s) | 59, 296, 302, 703, 713, 1361 |
| Alw21I | GWGCWC | 1 cut(s) | 705 |
| Alw26I | GTCTC | 4 cut(s) | 433, 1068, 1105, 1214 |
| AlwI | GGATC | 2 cut(s) | 90, 121 |
| Ama87I | CYCGRG | 1 cut(s) | 260 |
| AoxI | GGCC | 5 cut(s) | 892, 1289, 1347, 1353, 1377 |
| ApeKI | GCWGC | 1 cut(s) | 320 |
| ApoI | RAATTY | 4 cut(s) | 25, 569, 1141, 1416 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 18, 546 |
| AspA2I | CCTAGG | 3 cut(s) | 47, 941, 1003 |
| AspLEI | GCGC | 2 cut(s) | 908, 1313 |
| AspS9I | GGNCC | 2 cut(s) | 794, 1354 |
| AsuHPI | GGTGA | 3 cut(s) | 1004, 1012, 1019 |
| AsuII | TTCGAA | 1 cut(s) | 1389 |
| AvaI | CYCGRG | 1 cut(s) | 260 |
| AvaII | GGWCC | 1 cut(s) | 794 |
| AvrII | CCTAGG | 3 cut(s) | 47, 941, 1003 |
| AxyI | CCTNAGG | 1 cut(s) | 746 |
| BalI | TGGCCA | 1 cut(s) | 894 |
| BanI | GGYRCC | 5 cut(s) | 751, 905, 918, 1310, 1403 |
| BanII | GRGCYC | 1 cut(s) | 705 |
| BauI | CACGAG | 1 cut(s) | 1065 |
| BbsI | GAAGAC | 3 cut(s) | 414, 617, 1219 |
| Bbv12I | GWGCWC | 1 cut(s) | 705 |
| BbvI | GCAGC | 1 cut(s) | 332 |
| BccI | CCATC | 8 cut(s) | 356, 483, 637, 971, 989, 993, 1076, 1240 |
| BciT130I | CCWGG | 1 cut(s) | 272 |
| BciVI | GTATCC | 2 cut(s) | 769, 1388 |
| BclI | TGATCA | 1 cut(s) | 585 |
| BcoDI | GTCTC | 4 cut(s) | 433, 1068, 1105, 1214 |
| BfaI | CTAG | 8 cut(s) | 48, 267, 479, 942, 1004, 1101, 1362, 1413 |
| BfmI | CTRYAG | 2 cut(s) | 237, 285 |
| BfoI | RGCGCY | 2 cut(s) | 909, 1314 |
| BfuI | GTATCC | 2 cut(s) | 769, 1388 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 329 |
| BisI | GCNGC | 1 cut(s) | 321 |
| BlnI | CCTAGG | 3 cut(s) | 47, 941, 1003 |
| BlsI | GCNGC | 1 cut(s) | 322 |
| Bme1390I | CCNGG | 1 cut(s) | 272 |
| Bme18I | GGWCC | 1 cut(s) | 794 |
| BmeT110I | CYCGRG | 1 cut(s) | 260 |
| BmgBI | CACGTC | 1 cut(s) | 277 |
| BmgT120I | GGNCC | 2 cut(s) | 794, 1354 |
| BmiI | GGNNCC | 8 cut(s) | 753, 848, 907, 920, 1000, 1312, 1356, 1405 |
| BmrFI | CCNGG | 1 cut(s) | 272 |
| BmsI | GCATC | 4 cut(s) | 235, 583, 1000, 1356 |
| BpiI | GAAGAC | 3 cut(s) | 414, 617, 1219 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1318, 1350 |
| BpmI | CTGGAG | 2 cut(s) | 368, 1129 |
| Bpu14I | TTCGAA | 1 cut(s) | 1389 |
| BpuEI | CTTGAG | 2 cut(s) | 215, 282 |
| BsaHI | GRCGYC | 3 cut(s) | 906, 981, 1311 |
| BsaI | GGTCTC | 2 cut(s) | 433, 1068 |
| BsaJI | CCNNGG | 4 cut(s) | 47, 941, 1003, 1350 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 915, 947, 1175, 1238, 1362 |
| Bse1I | ACTGG | 4 cut(s) | 190, 385, 1112, 1380 |
| Bse21I | CCTNAGG | 1 cut(s) | 746 |
| Bse3DI | GCAATG | 1 cut(s) | 1095 |
| BseBI | CCWGG | 1 cut(s) | 272 |
| BseDI | CCNNGG | 4 cut(s) | 47, 941, 1003, 1350 |
| BseGI | GGATG | 6 cut(s) | 147, 351, 379, 982, 1264, 1371 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 915, 947, 1175, 1238, 1362 |
| BseMI | GCAATG | 1 cut(s) | 1095 |
| BseMII | CTCAG | 1 cut(s) | 552 |
| BseNI | ACTGG | 4 cut(s) | 190, 385, 1112, 1380 |
| BseXI | GCAGC | 1 cut(s) | 332 |
| BseYI | CCCAGC | 1 cut(s) | 1357 |
| BshFI | GGCC | 5 cut(s) | 894, 1291, 1349, 1355, 1379 |
| BshNI | GGYRCC | 5 cut(s) | 751, 905, 918, 1310, 1403 |
| BsiHKAI | GWGCWC | 1 cut(s) | 705 |
| BsiHKCI | CYCGRG | 1 cut(s) | 260 |
| BslFI | GGGAC | 2 cut(s) | 941, 1280 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 915, 947, 1175, 1238, 1362 |
| BsmAI | GTCTC | 4 cut(s) | 433, 1068, 1105, 1214 |
| BsmBI | CGTCTC | 1 cut(s) | 1105 |
| BsmFI | GGGAC | 2 cut(s) | 941, 1280 |
| BsnI | GGCC | 5 cut(s) | 894, 1291, 1349, 1355, 1379 |
| Bso31I | GGTCTC | 2 cut(s) | 433, 1068 |
| BsoBI | CYCGRG | 1 cut(s) | 260 |
| Bsp119I | TTCGAA | 1 cut(s) | 1389 |
| Bsp1286I | GDGCHC | 1 cut(s) | 705 |
| Bsp143I | GATC | 4 cut(s) | 82, 113, 585, 1180 |
| Bsp19I | CCATGG | 1 cut(s) | 1350 |
| BspACI | CCGC | 4 cut(s) | 220, 922, 1156, 1202 |
| BspANI | GGCC | 5 cut(s) | 894, 1291, 1349, 1355, 1379 |
| BspCNI | CTCAG | 1 cut(s) | 551 |
| BspHI | TCATGA | 1 cut(s) | 697 |
| BspLI | GGNNCC | 8 cut(s) | 753, 848, 907, 920, 1000, 1312, 1356, 1405 |
| BspPI | GGATC | 2 cut(s) | 90, 121 |
| BspT104I | TTCGAA | 1 cut(s) | 1389 |
| BspT107I | GGYRCC | 5 cut(s) | 751, 905, 918, 1310, 1403 |
| BspTNI | GGTCTC | 2 cut(s) | 433, 1068 |
| BsrDI | GCAATG | 1 cut(s) | 1095 |
| BsrI | ACTGG | 4 cut(s) | 190, 385, 1112, 1380 |
| BssECI | CCNNGG | 4 cut(s) | 47, 941, 1003, 1350 |
| BssMI | GATC | 4 cut(s) | 82, 113, 585, 1180 |
| BssNI | GRCGYC | 3 cut(s) | 906, 981, 1311 |
| BssSI | CACGAG | 1 cut(s) | 1065 |
| BssT1I | CCWWGG | 4 cut(s) | 47, 941, 1003, 1350 |
| Bst2BI | CACGAG | 1 cut(s) | 1065 |
| Bst2UI | CCWGG | 1 cut(s) | 272 |
| Bst4CI | ACNGT | 2 cut(s) | 286, 1225 |
| Bst6I | CTCTTC | 1 cut(s) | 847 |
| BstACI | GRCGYC | 3 cut(s) | 906, 981, 1311 |
| BstBI | TTCGAA | 1 cut(s) | 1389 |
| BstC8I | GCNNGC | 3 cut(s) | 224, 294, 949 |
| BstDEI | CTNAG | 6 cut(s) | 135, 325, 538, 651, 746, 768 |
| BstDSI | CCRYGG | 1 cut(s) | 1350 |
| BstF5I | GGATG | 6 cut(s) | 147, 351, 379, 982, 1264, 1371 |
| BstH2I | RGCGCY | 2 cut(s) | 909, 1314 |
| BstHHI | GCGC | 2 cut(s) | 908, 1313 |
| BstKTI | GATC | 4 cut(s) | 85, 116, 588, 1183 |
| BstMAI | GTCTC | 4 cut(s) | 433, 1068, 1105, 1214 |
| BstMBI | GATC | 4 cut(s) | 82, 113, 585, 1180 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 308, 317, 329, 338, 1199, 1346 |
| BstNI | CCWGG | 1 cut(s) | 272 |
| BstSCI | CCNGG | 1 cut(s) | 270 |
| BstSFI | CTRYAG | 2 cut(s) | 237, 285 |
| BstV1I | GCAGC | 1 cut(s) | 332 |
| BstV2I | GAAGAC | 3 cut(s) | 414, 617, 1219 |
| BstX2I | RGATCY | 1 cut(s) | 113 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 902 |
| BstYI | RGATCY | 1 cut(s) | 113 |
| Bsu36I | CCTNAGG | 1 cut(s) | 746 |
| BsuI | GTATCC | 2 cut(s) | 769, 1388 |
| BsuRI | GGCC | 5 cut(s) | 894, 1291, 1349, 1355, 1379 |
| BtgI | CCRYGG | 1 cut(s) | 1350 |
| BtgZI | GCGATG | 1 cut(s) | 611 |
| BtrI | CACGTC | 1 cut(s) | 277 |
| BtsCI | GGATG | 6 cut(s) | 147, 351, 379, 982, 1264, 1371 |
| BtsIMutI | CAGTG | 1 cut(s) | 1387 |
| Cac8I | GCNNGC | 3 cut(s) | 224, 294, 949 |
| CciI | TCATGA | 1 cut(s) | 697 |
| CfoI | GCGC | 2 cut(s) | 908, 1313 |
| Cfr13I | GGNCC | 2 cut(s) | 794, 1354 |
| CseI | GACGC | 1 cut(s) | 970 |
| Csp6I | GTAC | 2 cut(s) | 89, 388 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1309, 1344 |
| CviAII | CATG | 8 cut(s) | 668, 698, 734, 896, 965, 989, 1307, 1351 |
| CviQI | GTAC | 2 cut(s) | 89, 388 |
| DdeI | CTNAG | 6 cut(s) | 135, 325, 538, 651, 746, 768 |
| DinI | GGCGCC | 2 cut(s) | 907, 1312 |
| DpnI | GATC | 4 cut(s) | 84, 115, 587, 1182 |
| DpnII | GATC | 4 cut(s) | 82, 113, 585, 1180 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 792 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 792 |
| EaeI | YGGCCR | 1 cut(s) | 892 |
| Eam1104I | CTCTTC | 1 cut(s) | 847 |
| EarI | CTCTTC | 1 cut(s) | 847 |
| EciI | GGCGGA | 1 cut(s) | 209 |
| Ecl136II | GAGCTC | 1 cut(s) | 703 |
| Eco130I | CCWWGG | 4 cut(s) | 47, 941, 1003, 1350 |
| Eco24I | GRGCYC | 1 cut(s) | 705 |
| Eco31I | GGTCTC | 2 cut(s) | 433, 1068 |
| Eco32I | GATATC | 2 cut(s) | 197, 217 |
| Eco47I | GGWCC | 1 cut(s) | 794 |
| Eco53kI | GAGCTC | 1 cut(s) | 703 |
| Eco57I | CTGAAG | 1 cut(s) | 75 |
| Eco81I | CCTNAGG | 1 cut(s) | 746 |
| Eco88I | CYCGRG | 1 cut(s) | 260 |
| EcoICRI | GAGCTC | 1 cut(s) | 703 |
| EcoRI | GAATTC | 3 cut(s) | 569, 1141, 1416 |
| EcoRII | CCWGG | 1 cut(s) | 270 |
| EcoRV | GATATC | 2 cut(s) | 197, 217 |
| EcoT14I | CCWWGG | 4 cut(s) | 47, 941, 1003, 1350 |
| EcoT22I | ATGCAT | 1 cut(s) | 1308 |
| EcoT38I | GRGCYC | 1 cut(s) | 705 |
| EgeI | GGCGCC | 2 cut(s) | 907, 1312 |
| EheI | GGCGCC | 2 cut(s) | 907, 1312 |
| ErhI | CCWWGG | 4 cut(s) | 47, 941, 1003, 1350 |
| Esp3I | CGTCTC | 1 cut(s) | 1105 |
| FaeI | CATG | 8 cut(s) | 671, 701, 737, 899, 968, 992, 1310, 1354 |
| FaqI | GGGAC | 2 cut(s) | 941, 1280 |
| FatI | CATG | 8 cut(s) | 667, 697, 733, 895, 964, 988, 1306, 1350 |
| FauNDI | CATATG | 1 cut(s) | 369 |
| FbaI | TGATCA | 1 cut(s) | 585 |
| Fnu4HI | GCNGC | 1 cut(s) | 321 |
| FokI | GGATG | 6 cut(s) | 154, 338, 386, 989, 1271, 1378 |
| FriOI | GRGCYC | 1 cut(s) | 705 |
| Fsp4HI | GCNGC | 1 cut(s) | 321 |
| FspBI | CTAG | 8 cut(s) | 48, 267, 479, 942, 1004, 1101, 1362, 1413 |
| GlaI | GCGC | 2 cut(s) | 907, 1312 |
| GluI | GCNGC | 1 cut(s) | 321 |
| GsaI | CCCAGC | 1 cut(s) | 1361 |
| GsuI | CTGGAG | 2 cut(s) | 368, 1129 |
| HaeII | RGCGCY | 2 cut(s) | 909, 1314 |
| HaeIII | GGCC | 5 cut(s) | 894, 1291, 1349, 1355, 1379 |
| HgaI | GACGC | 1 cut(s) | 970 |
| HhaI | GCGC | 2 cut(s) | 908, 1313 |
| Hin1I | GRCGYC | 3 cut(s) | 906, 981, 1311 |
| Hin1II | CATG | 8 cut(s) | 671, 701, 737, 899, 968, 992, 1310, 1354 |
| Hin6I | GCGC | 2 cut(s) | 906, 1311 |
| HinP1I | GCGC | 2 cut(s) | 906, 1311 |
| HincII | GTYRAC | 1 cut(s) | 860 |
| HindII | GTYRAC | 1 cut(s) | 860 |
| HindIII | AAGCTT | 1 cut(s) | 300 |
| HphI | GGTGA | 3 cut(s) | 1004, 1012, 1019 |
| Hpy166II | GTNNAC | 2 cut(s) | 860, 932 |
| Hpy188I | TCNGA | 3 cut(s) | 8, 24, 541 |
| Hpy188III | TCNNGA | 9 cut(s) | 192, 212, 260, 473, 527, 698, 783, 1091, 1439 |
| Hpy8I | GTNNAC | 2 cut(s) | 860, 932 |
| Hpy99I | CGWCG | 1 cut(s) | 728 |
| HpyAV | CCTTC | 5 cut(s) | 411, 634, 640, 812, 1385 |
| HpyCH4III | ACNGT | 2 cut(s) | 286, 1225 |
| HpyCH4IV | ACGT | 5 cut(s) | 276, 453, 787, 862, 1128 |
| HpyCH4V | TGCA | 7 cut(s) | 67, 98, 129, 638, 677, 1174, 1306 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 308, 317, 329, 338, 1199, 1346 |
| HpyF3I | CTNAG | 6 cut(s) | 135, 325, 538, 651, 746, 768 |
| HpySE526I | ACGT | 5 cut(s) | 276, 453, 787, 862, 1128 |
| Hsp92I | GRCGYC | 3 cut(s) | 906, 981, 1311 |
| Hsp92II | CATG | 8 cut(s) | 671, 701, 737, 899, 968, 992, 1310, 1354 |
| HspAI | GCGC | 2 cut(s) | 906, 1311 |
| KasI | GGCGCC | 2 cut(s) | 905, 1310 |
| Ksp22I | TGATCA | 1 cut(s) | 585 |
| Kzo9I | GATC | 4 cut(s) | 82, 113, 585, 1180 |
| LmnI | GCTCC | 4 cut(s) | 175, 387, 710, 1004 |
| Lsp1109I | GCAGC | 1 cut(s) | 332 |
| LweI | GCATC | 4 cut(s) | 235, 583, 1000, 1356 |
| MaeI | CTAG | 8 cut(s) | 48, 267, 479, 942, 1004, 1101, 1362, 1413 |
| MaeII | ACGT | 5 cut(s) | 276, 453, 787, 862, 1128 |
| MaeIII | GTNAC | 6 cut(s) | 146, 458, 821, 1103, 1208, 1341 |
| MalI | GATC | 4 cut(s) | 84, 115, 587, 1182 |
| MboI | GATC | 4 cut(s) | 82, 113, 585, 1180 |
| MboII | GAAGA | 6 cut(s) | 416, 419, 449, 622, 864, 1219 |
| MflI | RGATCY | 1 cut(s) | 113 |
| MhlI | GDGCHC | 1 cut(s) | 705 |
| MlsI | TGGCCA | 1 cut(s) | 894 |
| MluCI | AATT | 6 cut(s) | 25, 158, 569, 1141, 1280, 1416 |
| MluNI | TGGCCA | 1 cut(s) | 894 |
| Mly113I | GGCGCC | 2 cut(s) | 906, 1311 |
| MlyI | GAGTC | 4 cut(s) | 355, 455, 607, 962 |
| MmeI | TCCRAC | 1 cut(s) | 1111 |
| Mox20I | TGGCCA | 1 cut(s) | 894 |
| Mph1103I | ATGCAT | 1 cut(s) | 1308 |
| MroXI | GAANNNNTTC | 2 cut(s) | 18, 546 |
| MscI | TGGCCA | 1 cut(s) | 894 |
| MseI | TTAA | 3 cut(s) | 555, 563, 1163 |
| MslI | CAYNNNNRTG | 8 cut(s) | 356, 372, 507, 900, 990, 993, 1057, 1215 |
| Msp20I | TGGCCA | 1 cut(s) | 894 |
| MspR9I | CCNGG | 1 cut(s) | 272 |
| MvaI | CCWGG | 1 cut(s) | 272 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 308, 317, 329, 338, 1199, 1346 |
| NarI | GGCGCC | 2 cut(s) | 906, 1311 |
| NcoI | CCATGG | 1 cut(s) | 1350 |
| NdeI | CATATG | 1 cut(s) | 369 |
| NdeII | GATC | 4 cut(s) | 82, 113, 585, 1180 |
| NlaIII | CATG | 8 cut(s) | 671, 701, 737, 899, 968, 992, 1310, 1354 |
| NlaIV | GGNNCC | 8 cut(s) | 753, 848, 907, 920, 1000, 1312, 1356, 1405 |
| NmuCI | GTSAC | 3 cut(s) | 458, 1103, 1208 |
| NsiI | ATGCAT | 1 cut(s) | 1308 |
| NspV | TTCGAA | 1 cut(s) | 1389 |
| OliI | CACNNNNGTG | 1 cut(s) | 507 |
| PaeR7I | CTCGAG | 1 cut(s) | 260 |
| PagI | TCATGA | 1 cut(s) | 697 |
| PdmI | GAANNNNTTC | 2 cut(s) | 18, 546 |
| PfeI | GAWTC | 7 cut(s) | 14, 41, 243, 256, 663, 684, 1017 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1238 |
| PkrI | GCNGC | 1 cut(s) | 322 |
| PleI | GAGTC | 4 cut(s) | 355, 455, 607, 962 |
| PluTI | GGCGCC | 2 cut(s) | 909, 1314 |
| PpsI | GAGTC | 4 cut(s) | 355, 455, 607, 962 |
| Psp124BI | GAGCTC | 1 cut(s) | 705 |
| Psp6I | CCWGG | 1 cut(s) | 270 |
| PspFI | CCCAGC | 1 cut(s) | 1357 |
| PspGI | CCWGG | 1 cut(s) | 270 |
| PspN4I | GGNNCC | 8 cut(s) | 753, 848, 907, 920, 1000, 1312, 1356, 1405 |
| PspPI | GGNCC | 2 cut(s) | 794, 1354 |
| PsuI | RGATCY | 1 cut(s) | 113 |
| RsaI | GTAC | 2 cut(s) | 90, 389 |
| RsaNI | GTAC | 2 cut(s) | 89, 388 |
| RseI | CAYNNNNRTG | 8 cut(s) | 356, 372, 507, 900, 990, 993, 1057, 1215 |
| SacI | GAGCTC | 1 cut(s) | 705 |
| SaqAI | TTAA | 3 cut(s) | 555, 563, 1163 |
| SatI | GCNGC | 1 cut(s) | 321 |
| Sau3AI | GATC | 4 cut(s) | 82, 113, 585, 1180 |
| Sau96I | GGNCC | 2 cut(s) | 794, 1354 |
| SchI | GAGTC | 4 cut(s) | 355, 455, 607, 962 |
| ScrFI | CCNGG | 1 cut(s) | 272 |
| SduI | GDGCHC | 1 cut(s) | 705 |
| SfaNI | GCATC | 4 cut(s) | 235, 583, 1000, 1356 |
| SfcI | CTRYAG | 2 cut(s) | 237, 285 |
| SfoI | GGCGCC | 2 cut(s) | 907, 1312 |
| Sfr274I | CTCGAG | 1 cut(s) | 260 |
| SfuI | TTCGAA | 1 cut(s) | 1389 |
| SinI | GGWCC | 1 cut(s) | 794 |
| SlaI | CTCGAG | 1 cut(s) | 260 |
| SmiMI | CAYNNNNRTG | 8 cut(s) | 356, 372, 507, 900, 990, 993, 1057, 1215 |
| SmlI | CTYRAG | 3 cut(s) | 230, 260, 297 |
| SmoI | CTYRAG | 3 cut(s) | 230, 260, 297 |
| Sse9I | AATT | 6 cut(s) | 25, 158, 569, 1141, 1280, 1416 |
| SsiI | CCGC | 4 cut(s) | 220, 922, 1156, 1202 |
| SspDI | GGCGCC | 2 cut(s) | 905, 1310 |
| SspMI | CTAG | 8 cut(s) | 48, 267, 479, 942, 1004, 1101, 1362, 1413 |
| SstI | GAGCTC | 1 cut(s) | 705 |
| StyD4I | CCNGG | 1 cut(s) | 270 |
| StyI | CCWWGG | 4 cut(s) | 47, 941, 1003, 1350 |
| TaaI | ACNGT | 2 cut(s) | 286, 1225 |
| TaiI | ACGT | 5 cut(s) | 279, 456, 790, 865, 1131 |
| TaqI | TCGA | 6 cut(s) | 85, 261, 435, 661, 726, 1389 |
| TasI | AATT | 6 cut(s) | 25, 158, 569, 1141, 1280, 1416 |
| TfiI | GAWTC | 7 cut(s) | 14, 41, 243, 256, 663, 684, 1017 |
| Tru1I | TTAA | 3 cut(s) | 555, 563, 1163 |
| Tru9I | TTAA | 3 cut(s) | 555, 563, 1163 |
| TscAI | CASTG | 1 cut(s) | 1387 |
| TseFI | GTSAC | 3 cut(s) | 458, 1103, 1208 |
| TseI | GCWGC | 1 cut(s) | 320 |
| Tsp45I | GTSAC | 3 cut(s) | 458, 1103, 1208 |
| TspDTI | ATGAA | 5 cut(s) | 413, 417, 686, 731, 1414 |
| TspGWI | ACGGA | 4 cut(s) | 446, 859, 917, 1271 |
| TspRI | CASTG | 1 cut(s) | 1387 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1238 |
| VpaK11BI | GGWCC | 1 cut(s) | 794 |
| XapI | RAATTY | 4 cut(s) | 25, 569, 1141, 1416 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 992 |
| XhoI | CTCGAG | 1 cut(s) | 260 |
| XmaJI | CCTAGG | 3 cut(s) | 47, 941, 1003 |
| XmnI | GAANNNNTTC | 2 cut(s) | 18, 546 |
| XspI | CTAG | 8 cut(s) | 48, 267, 479, 942, 1004, 1101, 1362, 1413 |
| Zsp2I | ATGCAT | 1 cut(s) | 1308 |