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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 842 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 291, 787 |
| AciI | CCGC | 2 cut(s) | 60, 496 |
| AcsI | RAATTY | 2 cut(s) | 311, 440 |
| AcyI | GRCGYC | 2 cut(s) | 825, 843 |
| AfaI | GTAC | 1 cut(s) | 665 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 256, 291, 787, 791 |
| AgsI | TTSAA | 1 cut(s) | 878 |
| AjiI | CACGTC | 2 cut(s) | 178, 204 |
| AjnI | CCWGG | 2 cut(s) | 546, 847 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 705, 737 |
| AluBI | AGCT | 3 cut(s) | 125, 572, 578 |
| AluI | AGCT | 3 cut(s) | 125, 572, 578 |
| Alw26I | GTCTC | 1 cut(s) | 709 |
| Ama87I | CYCGRG | 1 cut(s) | 536 |
| AoxI | GGCC | 3 cut(s) | 55, 139, 282 |
| ApaI | GGGCCC | 1 cut(s) | 59 |
| ApeKI | GCWGC | 2 cut(s) | 62, 857 |
| ApoI | RAATTY | 2 cut(s) | 311, 440 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 444 |
| AspLEI | GCGC | 3 cut(s) | 217, 797, 845 |
| AspS9I | GGNCC | 5 cut(s) | 55, 56, 134, 140, 282 |
| AsuC2I | CCSGG | 4 cut(s) | 138, 231, 242, 318 |
| AsuHPI | GGTGA | 3 cut(s) | 848, 856, 863 |
| AvaI | CYCGRG | 1 cut(s) | 536 |
| AvaII | GGWCC | 1 cut(s) | 134 |
| BaeGI | GKGCMC | 1 cut(s) | 59 |
| BanI | GGYRCC | 1 cut(s) | 842 |
| BanII | GRGCYC | 1 cut(s) | 59 |
| BbsI | GAAGAC | 2 cut(s) | 87, 690 |
| BbvI | GCAGC | 2 cut(s) | 49, 844 |
| BccI | CCATC | 4 cut(s) | 632, 815, 833, 837 |
| BciT130I | CCWGG | 2 cut(s) | 548, 849 |
| BcnI | CCSGG | 4 cut(s) | 138, 231, 242, 318 |
| BcoDI | GTCTC | 1 cut(s) | 709 |
| BfaI | CTAG | 3 cut(s) | 77, 543, 755 |
| BfmI | CTRYAG | 1 cut(s) | 513 |
| BfoI | RGCGCY | 2 cut(s) | 218, 846 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 605 |
| BisI | GCNGC | 2 cut(s) | 63, 858 |
| BlsI | GCNGC | 2 cut(s) | 64, 859 |
| Bme1390I | CCNGG | 6 cut(s) | 138, 231, 242, 318, 548, 849 |
| Bme18I | GGWCC | 1 cut(s) | 134 |
| BmeT110I | CYCGRG | 1 cut(s) | 536 |
| BmgBI | CACGTC | 2 cut(s) | 178, 204 |
| BmgT120I | GGNCC | 5 cut(s) | 55, 56, 134, 140, 282 |
| BmiI | GGNNCC | 4 cut(s) | 57, 58, 136, 844 |
| BmrFI | CCNGG | 6 cut(s) | 138, 231, 242, 318, 548, 849 |
| BmsI | GCATC | 4 cut(s) | 218, 511, 802, 844 |
| BpiI | GAAGAC | 2 cut(s) | 87, 690 |
| BpmI | CTGGAG | 1 cut(s) | 644 |
| BpuEI | CTTGAG | 2 cut(s) | 491, 558 |
| BpuMI | CCSGG | 4 cut(s) | 138, 231, 242, 318 |
| BsaHI | GRCGYC | 2 cut(s) | 825, 843 |
| BsaI | GGTCTC | 1 cut(s) | 709 |
| BsaJI | CCNNGG | 1 cut(s) | 847 |
| BsaWI | WCCGGW | 1 cut(s) | 304 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 256, 291, 787, 791 |
| Bse1I | ACTGG | 2 cut(s) | 466, 661 |
| Bse3DI | GCAATG | 1 cut(s) | 822 |
| BseBI | CCWGG | 2 cut(s) | 548, 849 |
| BseDI | CCNNGG | 1 cut(s) | 847 |
| BseGI | GGATG | 5 cut(s) | 223, 423, 627, 655, 826 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 256, 291, 787, 791 |
| BseMI | GCAATG | 1 cut(s) | 822 |
| BseMII | CTCAG | 1 cut(s) | 358 |
| BseNI | ACTGG | 2 cut(s) | 466, 661 |
| BseSI | GKGCMC | 1 cut(s) | 59 |
| BseXI | GCAGC | 2 cut(s) | 49, 844 |
| BshFI | GGCC | 3 cut(s) | 57, 141, 284 |
| BshNI | GGYRCC | 1 cut(s) | 842 |
| BsiHKCI | CYCGRG | 1 cut(s) | 536 |
| BsiSI | CCGG | 6 cut(s) | 138, 231, 242, 269, 305, 318 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 256, 291, 787, 791 |
| BsmAI | GTCTC | 1 cut(s) | 709 |
| BsnI | GGCC | 3 cut(s) | 57, 141, 284 |
| Bso31I | GGTCTC | 1 cut(s) | 709 |
| BsoBI | CYCGRG | 1 cut(s) | 536 |
| Bsp120I | GGGCCC | 1 cut(s) | 55 |
| Bsp1286I | GDGCHC | 1 cut(s) | 59 |
| BspACI | CCGC | 2 cut(s) | 60, 496 |
| BspANI | GGCC | 3 cut(s) | 57, 141, 284 |
| BspCNI | CTCAG | 1 cut(s) | 357 |
| BspLI | GGNNCC | 4 cut(s) | 57, 58, 136, 844 |
| BspT107I | GGYRCC | 1 cut(s) | 842 |
| BspTNI | GGTCTC | 1 cut(s) | 709 |
| BsrDI | GCAATG | 1 cut(s) | 822 |
| BsrI | ACTGG | 2 cut(s) | 466, 661 |
| BssECI | CCNNGG | 1 cut(s) | 847 |
| BssNI | GRCGYC | 2 cut(s) | 825, 843 |
| Bst2UI | CCWGG | 2 cut(s) | 548, 849 |
| Bst4CI | ACNGT | 1 cut(s) | 562 |
| BstACI | GRCGYC | 2 cut(s) | 825, 843 |
| BstC8I | GCNNGC | 3 cut(s) | 500, 570, 793 |
| BstDEI | CTNAG | 2 cut(s) | 344, 601 |
| BstF5I | GGATG | 5 cut(s) | 223, 423, 627, 655, 826 |
| BstH2I | RGCGCY | 2 cut(s) | 218, 846 |
| BstHHI | GCGC | 3 cut(s) | 217, 797, 845 |
| BstMAI | GTCTC | 1 cut(s) | 709 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 206, 378, 584, 605, 614 |
| BstNI | CCWGG | 2 cut(s) | 548, 849 |
| BstSCI | CCNGG | 6 cut(s) | 136, 229, 240, 316, 546, 847 |
| BstSFI | CTRYAG | 1 cut(s) | 513 |
| BstSLI | GKGCMC | 1 cut(s) | 59 |
| BstV1I | GCAGC | 2 cut(s) | 49, 844 |
| BstV2I | GAAGAC | 2 cut(s) | 87, 690 |
| BsuRI | GGCC | 3 cut(s) | 57, 141, 284 |
| BtrI | CACGTC | 2 cut(s) | 178, 204 |
| BtsCI | GGATG | 5 cut(s) | 223, 423, 627, 655, 826 |
| Cac8I | GCNNGC | 3 cut(s) | 500, 570, 793 |
| CfoI | GCGC | 3 cut(s) | 217, 797, 845 |
| Cfr13I | GGNCC | 5 cut(s) | 55, 56, 134, 140, 282 |
| CseI | GACGC | 1 cut(s) | 814 |
| Csp6I | GTAC | 1 cut(s) | 664 |
| CviAII | CATG | 3 cut(s) | 553, 809, 833 |
| CviQI | GTAC | 1 cut(s) | 664 |
| DdeI | CTNAG | 2 cut(s) | 344, 601 |
| DinI | GGCGCC | 1 cut(s) | 844 |
| EciI | GGCGGA | 1 cut(s) | 485 |
| Eco24I | GRGCYC | 1 cut(s) | 59 |
| Eco31I | GGTCTC | 1 cut(s) | 709 |
| Eco32I | GATATC | 2 cut(s) | 473, 493 |
| Eco47I | GGWCC | 1 cut(s) | 134 |
| Eco88I | CYCGRG | 1 cut(s) | 536 |
| EcoO109I | RGGNCCY | 1 cut(s) | 56 |
| EcoRII | CCWGG | 2 cut(s) | 546, 847 |
| EcoRV | GATATC | 2 cut(s) | 473, 493 |
| EcoT38I | GRGCYC | 1 cut(s) | 59 |
| EgeI | GGCGCC | 1 cut(s) | 844 |
| EheI | GGCGCC | 1 cut(s) | 844 |
| FaeI | CATG | 3 cut(s) | 556, 812, 836 |
| FatI | CATG | 3 cut(s) | 552, 808, 832 |
| FauI | CCCGC | 1 cut(s) | 67 |
| FauNDI | CATATG | 2 cut(s) | 356, 645 |
| Fnu4HI | GCNGC | 2 cut(s) | 63, 858 |
| FokI | GGATG | 5 cut(s) | 210, 430, 614, 662, 833 |
| FriOI | GRGCYC | 1 cut(s) | 59 |
| Fsp4HI | GCNGC | 2 cut(s) | 63, 858 |
| FspBI | CTAG | 3 cut(s) | 77, 543, 755 |
| GlaI | GCGC | 3 cut(s) | 216, 796, 844 |
| GluI | GCNGC | 2 cut(s) | 63, 858 |
| GsuI | CTGGAG | 1 cut(s) | 644 |
| HaeII | RGCGCY | 2 cut(s) | 218, 846 |
| HaeIII | GGCC | 3 cut(s) | 57, 141, 284 |
| HapII | CCGG | 6 cut(s) | 138, 231, 242, 269, 305, 318 |
| HgaI | GACGC | 1 cut(s) | 814 |
| HhaI | GCGC | 3 cut(s) | 217, 797, 845 |
| Hin1I | GRCGYC | 2 cut(s) | 825, 843 |
| Hin1II | CATG | 3 cut(s) | 556, 812, 836 |
| Hin6I | GCGC | 3 cut(s) | 215, 795, 843 |
| HinP1I | GCGC | 3 cut(s) | 215, 795, 843 |
| HincII | GTYRAC | 3 cut(s) | 181, 236, 247 |
| HindII | GTYRAC | 3 cut(s) | 181, 236, 247 |
| HindIII | AAGCTT | 1 cut(s) | 576 |
| HinfI | GANTC | 5 cut(s) | 519, 532, 637, 653, 737 |
| HpaII | CCGG | 6 cut(s) | 138, 231, 242, 269, 305, 318 |
| HphI | GGTGA | 3 cut(s) | 848, 856, 863 |
| Hpy166II | GTNNAC | 4 cut(s) | 134, 181, 236, 247 |
| Hpy188I | TCNGA | 1 cut(s) | 385 |
| Hpy188III | TCNNGA | 5 cut(s) | 415, 468, 488, 536, 749 |
| Hpy8I | GTNNAC | 4 cut(s) | 134, 181, 236, 247 |
| HpyAV | CCTTC | 2 cut(s) | 687, 752 |
| HpyCH4III | ACNGT | 1 cut(s) | 562 |
| HpyCH4IV | ACGT | 3 cut(s) | 177, 203, 884 |
| HpyCH4V | TGCA | 2 cut(s) | 815, 860 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 206, 378, 584, 605, 614 |
| HpyF3I | CTNAG | 2 cut(s) | 344, 601 |
| HpySE526I | ACGT | 3 cut(s) | 177, 203, 884 |
| Hsp92I | GRCGYC | 2 cut(s) | 825, 843 |
| Hsp92II | CATG | 3 cut(s) | 556, 812, 836 |
| HspAI | GCGC | 3 cut(s) | 215, 795, 843 |
| KasI | GGCGCC | 1 cut(s) | 842 |
| LmnI | GCTCC | 2 cut(s) | 386, 663 |
| Lsp1109I | GCAGC | 2 cut(s) | 49, 844 |
| LweI | GCATC | 4 cut(s) | 218, 511, 802, 844 |
| MaeI | CTAG | 3 cut(s) | 77, 543, 755 |
| MaeII | ACGT | 3 cut(s) | 177, 203, 884 |
| MaeIII | GTNAC | 2 cut(s) | 422, 734 |
| MhlI | GDGCHC | 1 cut(s) | 59 |
| MluCI | AATT | 6 cut(s) | 48, 311, 349, 397, 434, 440 |
| Mly113I | GGCGCC | 1 cut(s) | 843 |
| MlyI | GAGTC | 2 cut(s) | 631, 731 |
| MnlI | CCTC | 4 cut(s) | 237, 598, 778, 782 |
| MroXI | GAANNNNTTC | 1 cut(s) | 444 |
| MslI | CAYNNNNRTG | 4 cut(s) | 632, 648, 834, 837 |
| MspA1I | CMGCKG | 1 cut(s) | 62 |
| MspI | CCGG | 6 cut(s) | 138, 231, 242, 269, 305, 318 |
| MspR9I | CCNGG | 6 cut(s) | 138, 231, 242, 318, 548, 849 |
| MvaI | CCWGG | 2 cut(s) | 548, 849 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 206, 378, 584, 605, 614 |
| NarI | GGCGCC | 1 cut(s) | 843 |
| NciI | CCSGG | 4 cut(s) | 138, 231, 242, 318 |
| NdeI | CATATG | 2 cut(s) | 356, 645 |
| NlaIII | CATG | 3 cut(s) | 556, 812, 836 |
| NlaIV | GGNNCC | 4 cut(s) | 57, 58, 136, 844 |
| NmuCI | GTSAC | 1 cut(s) | 734 |
| PaeR7I | CTCGAG | 1 cut(s) | 536 |
| PdmI | GAANNNNTTC | 1 cut(s) | 444 |
| PfeI | GAWTC | 3 cut(s) | 519, 532, 653 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 291, 787 |
| PkrI | GCNGC | 2 cut(s) | 64, 859 |
| PleI | GAGTC | 2 cut(s) | 631, 731 |
| PluTI | GGCGCC | 1 cut(s) | 846 |
| PpsI | GAGTC | 2 cut(s) | 631, 731 |
| Psp6I | CCWGG | 2 cut(s) | 546, 847 |
| PspGI | CCWGG | 2 cut(s) | 546, 847 |
| PspN4I | GGNNCC | 4 cut(s) | 57, 58, 136, 844 |
| PspOMI | GGGCCC | 1 cut(s) | 55 |
| PspPI | GGNCC | 5 cut(s) | 55, 56, 134, 140, 282 |
| RsaI | GTAC | 1 cut(s) | 665 |
| RsaNI | GTAC | 1 cut(s) | 664 |
| RseI | CAYNNNNRTG | 4 cut(s) | 632, 648, 834, 837 |
| SatI | GCNGC | 2 cut(s) | 63, 858 |
| Sau96I | GGNCC | 5 cut(s) | 55, 56, 134, 140, 282 |
| SchI | GAGTC | 2 cut(s) | 631, 731 |
| ScrFI | CCNGG | 6 cut(s) | 138, 231, 242, 318, 548, 849 |
| SduI | GDGCHC | 1 cut(s) | 59 |
| SfaNI | GCATC | 4 cut(s) | 218, 511, 802, 844 |
| SfcI | CTRYAG | 1 cut(s) | 513 |
| SfoI | GGCGCC | 1 cut(s) | 844 |
| Sfr274I | CTCGAG | 1 cut(s) | 536 |
| SinI | GGWCC | 1 cut(s) | 134 |
| SlaI | CTCGAG | 1 cut(s) | 536 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 632, 648, 834, 837 |
| SmlI | CTYRAG | 3 cut(s) | 506, 536, 573 |
| SmoI | CTYRAG | 3 cut(s) | 506, 536, 573 |
| Sse9I | AATT | 6 cut(s) | 48, 311, 349, 397, 434, 440 |
| SsiI | CCGC | 2 cut(s) | 60, 496 |
| SspDI | GGCGCC | 1 cut(s) | 842 |
| SspMI | CTAG | 3 cut(s) | 77, 543, 755 |
| StyD4I | CCNGG | 6 cut(s) | 136, 229, 240, 316, 546, 847 |
| TaaI | ACNGT | 1 cut(s) | 562 |
| TaiI | ACGT | 3 cut(s) | 180, 206, 887 |
| TaqI | TCGA | 3 cut(s) | 331, 537, 711 |
| TasI | AATT | 6 cut(s) | 48, 311, 349, 397, 434, 440 |
| TfiI | GAWTC | 3 cut(s) | 519, 532, 653 |
| TseFI | GTSAC | 1 cut(s) | 734 |
| TseI | GCWGC | 2 cut(s) | 62, 857 |
| Tsp45I | GTSAC | 1 cut(s) | 734 |
| TspDTI | ATGAA | 2 cut(s) | 343, 689 |
| TspGWI | ACGGA | 3 cut(s) | 47, 722, 730 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 291, 787 |
| VpaK11BI | GGWCC | 1 cut(s) | 134 |
| XapI | RAATTY | 2 cut(s) | 311, 440 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 788, 836 |
| XhoI | CTCGAG | 1 cut(s) | 536 |
| XmnI | GAANNNNTTC | 1 cut(s) | 444 |
| XspI | CTAG | 3 cut(s) | 77, 543, 755 |