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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 585, 630 |
| Acc65I | GGTACC | 1 cut(s) | 660 |
| AccB1I | GGYRCC | 2 cut(s) | 660, 827 |
| AccBSI | CCGCTC | 1 cut(s) | 658 |
| AciI | CCGC | 3 cut(s) | 658, 706, 851 |
| AclWI | GGATC | 2 cut(s) | 141, 518 |
| AcuI | CTGAAG | 1 cut(s) | 1017 |
| AcyI | GRCGYC | 1 cut(s) | 190 |
| AdeI | CACNNNGTG | 1 cut(s) | 866 |
| AfaI | GTAC | 3 cut(s) | 490, 662, 935 |
| AfeI | AGCGCT | 2 cut(s) | 258, 269 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 64, 393, 644, 645, 671, 715, 768, 841 |
| AflIII | ACRYGT | 1 cut(s) | 746 |
| AgsI | TTSAA | 6 cut(s) | 96, 307, 343, 366, 591, 991 |
| AjnI | CCWGG | 1 cut(s) | 714 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 255, 287 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 125, 157 |
| AluBI | AGCT | 7 cut(s) | 247, 371, 427, 529, 551, 795, 995 |
| AluI | AGCT | 7 cut(s) | 247, 371, 427, 529, 551, 795, 995 |
| Alw21I | GWGCWC | 2 cut(s) | 862, 871 |
| Alw44I | GTGCAC | 2 cut(s) | 858, 867 |
| AlwI | GGATC | 2 cut(s) | 141, 518 |
| Aor51HI | AGCGCT | 2 cut(s) | 258, 269 |
| AoxI | GGCC | 2 cut(s) | 593, 694 |
| ApaI | GGGCCC | 1 cut(s) | 698 |
| ApaLI | GTGCAC | 2 cut(s) | 858, 867 |
| ApeKI | GCWGC | 1 cut(s) | 1019 |
| Asp718I | GGTACC | 1 cut(s) | 660 |
| AspA2I | CCTAGG | 1 cut(s) | 839 |
| AspLEI | GCGC | 3 cut(s) | 208, 259, 270 |
| AspS9I | GGNCC | 4 cut(s) | 594, 694, 695, 913 |
| AsuC2I | CCSGG | 1 cut(s) | 131 |
| AsuHPI | GGTGA | 1 cut(s) | 967 |
| AvaII | GGWCC | 1 cut(s) | 913 |
| AvrII | CCTAGG | 1 cut(s) | 839 |
| AxyI | CCTNAGG | 1 cut(s) | 917 |
| BaeGI | GKGCMC | 3 cut(s) | 698, 862, 871 |
| BanI | GGYRCC | 2 cut(s) | 660, 827 |
| BanII | GRGCYC | 1 cut(s) | 698 |
| BauI | CACGAG | 2 cut(s) | 514, 572 |
| Bbv12I | GWGCWC | 2 cut(s) | 862, 871 |
| BbvI | GCAGC | 1 cut(s) | 1031 |
| BccI | CCATC | 2 cut(s) | 93, 950 |
| BciT130I | CCWGG | 1 cut(s) | 716 |
| BciVI | GTATCC | 2 cut(s) | 736, 797 |
| BcnI | CCSGG | 1 cut(s) | 131 |
| BfaI | CTAG | 4 cut(s) | 15, 260, 792, 840 |
| BfmI | CTRYAG | 1 cut(s) | 546 |
| BfoI | RGCGCY | 3 cut(s) | 209, 260, 271 |
| BfuI | GTATCC | 2 cut(s) | 736, 797 |
| BisI | GCNGC | 1 cut(s) | 1020 |
| BlnI | CCTAGG | 1 cut(s) | 839 |
| BlsI | GCNGC | 1 cut(s) | 1021 |
| Bme1390I | CCNGG | 2 cut(s) | 131, 716 |
| Bme18I | GGWCC | 1 cut(s) | 913 |
| BmgT120I | GGNCC | 4 cut(s) | 594, 694, 695, 913 |
| BmiI | GGNNCC | 3 cut(s) | 662, 696, 829 |
| BmrFI | CCNGG | 2 cut(s) | 131, 716 |
| BmsI | GCATC | 2 cut(s) | 174, 1006 |
| BpmI | CTGGAG | 2 cut(s) | 236, 513 |
| BpuEI | CTTGAG | 1 cut(s) | 153 |
| BpuMI | CCSGG | 1 cut(s) | 131 |
| BsaHI | GRCGYC | 1 cut(s) | 190 |
| BsaJI | CCNNGG | 2 cut(s) | 839, 978 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 209, 239, 763, 793, 820, 850 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 64, 393, 644, 645, 671, 715, 768, 841 |
| Bse1I | ACTGG | 2 cut(s) | 219, 496 |
| Bse21I | CCTNAGG | 1 cut(s) | 917 |
| Bse3DI | GCAATG | 1 cut(s) | 283 |
| BseBI | CCWGG | 1 cut(s) | 716 |
| BseDI | CCNNGG | 2 cut(s) | 839, 978 |
| BseGI | GGATG | 1 cut(s) | 1021 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 64, 393, 644, 645, 671, 715, 768, 841 |
| BseMI | GCAATG | 1 cut(s) | 283 |
| BseMII | CTCAG | 3 cut(s) | 223, 543, 908 |
| BseNI | ACTGG | 2 cut(s) | 219, 496 |
| BseRI | GAGGAG | 1 cut(s) | 284 |
| BseSI | GKGCMC | 3 cut(s) | 698, 862, 871 |
| BseXI | GCAGC | 1 cut(s) | 1031 |
| BshFI | GGCC | 2 cut(s) | 595, 696 |
| BshNI | GGYRCC | 2 cut(s) | 660, 827 |
| BsiHKAI | GWGCWC | 2 cut(s) | 862, 871 |
| BsiSI | CCGG | 1 cut(s) | 131 |
| BslFI | GGGAC | 2 cut(s) | 690, 699 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 64, 393, 644, 645, 671, 715, 768, 841 |
| BsmFI | GGGAC | 2 cut(s) | 690, 699 |
| BsmI | GAATGC | 2 cut(s) | 241, 851 |
| BsnI | GGCC | 2 cut(s) | 595, 696 |
| Bsp120I | GGGCCC | 1 cut(s) | 694 |
| Bsp1286I | GDGCHC | 3 cut(s) | 698, 862, 871 |
| Bsp143I | GATC | 3 cut(s) | 133, 228, 510 |
| Bsp19I | CCATGG | 1 cut(s) | 978 |
| BspACI | CCGC | 3 cut(s) | 658, 706, 851 |
| BspANI | GGCC | 2 cut(s) | 595, 696 |
| BspCNI | CTCAG | 3 cut(s) | 222, 544, 909 |
| BspHI | TCATGA | 1 cut(s) | 616 |
| BspLI | GGNNCC | 3 cut(s) | 662, 696, 829 |
| BspPI | GGATC | 2 cut(s) | 141, 518 |
| BspQI | GCTCTTC | 2 cut(s) | 258, 378 |
| BspT107I | GGYRCC | 2 cut(s) | 660, 827 |
| BsrBI | CCGCTC | 1 cut(s) | 658 |
| BsrDI | GCAATG | 1 cut(s) | 283 |
| BsrI | ACTGG | 2 cut(s) | 219, 496 |
| BssECI | CCNNGG | 2 cut(s) | 839, 978 |
| BssMI | GATC | 3 cut(s) | 133, 228, 510 |
| BssNI | GRCGYC | 1 cut(s) | 190 |
| BssSI | CACGAG | 2 cut(s) | 514, 572 |
| BssT1I | CCWWGG | 2 cut(s) | 839, 978 |
| Bst2BI | CACGAG | 2 cut(s) | 514, 572 |
| Bst2UI | CCWGG | 1 cut(s) | 716 |
| Bst4CI | ACNGT | 3 cut(s) | 62, 384, 488 |
| Bst6I | CTCTTC | 2 cut(s) | 258, 378 |
| BstACI | GRCGYC | 1 cut(s) | 190 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 866 |
| BstC8I | GCNNGC | 2 cut(s) | 165, 851 |
| BstDEI | CTNAG | 5 cut(s) | 209, 552, 606, 666, 917 |
| BstDSI | CCRYGG | 1 cut(s) | 978 |
| BstEII | GGTNACC | 1 cut(s) | 67 |
| BstF5I | GGATG | 1 cut(s) | 1021 |
| BstH2I | RGCGCY | 3 cut(s) | 209, 260, 271 |
| BstHHI | GCGC | 3 cut(s) | 208, 259, 270 |
| BstKTI | GATC | 3 cut(s) | 136, 231, 513 |
| BstMBI | GATC | 3 cut(s) | 133, 228, 510 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 265, 866 |
| BstNI | CCWGG | 1 cut(s) | 716 |
| BstNSI | RCATGY | 2 cut(s) | 167, 750 |
| BstPI | GGTNACC | 1 cut(s) | 67 |
| BstSCI | CCNGG | 2 cut(s) | 129, 714 |
| BstSFI | CTRYAG | 1 cut(s) | 546 |
| BstSLI | GKGCMC | 3 cut(s) | 698, 862, 871 |
| BstV1I | GCAGC | 1 cut(s) | 1031 |
| BstX2I | RGATCY | 1 cut(s) | 133 |
| BstYI | RGATCY | 1 cut(s) | 133 |
| Bsu36I | CCTNAGG | 1 cut(s) | 917 |
| BsuI | GTATCC | 2 cut(s) | 736, 797 |
| BsuRI | GGCC | 2 cut(s) | 595, 696 |
| BtgI | CCRYGG | 1 cut(s) | 978 |
| BtsCI | GGATG | 1 cut(s) | 1021 |
| Cac8I | GCNNGC | 2 cut(s) | 165, 851 |
| CciI | TCATGA | 1 cut(s) | 616 |
| CfoI | GCGC | 3 cut(s) | 208, 259, 270 |
| Cfr13I | GGNCC | 4 cut(s) | 594, 694, 695, 913 |
| CseI | GACGC | 1 cut(s) | 198 |
| Csp6I | GTAC | 3 cut(s) | 489, 661, 934 |
| CviAII | CATG | 9 cut(s) | 31, 164, 388, 560, 617, 680, 747, 767, 979 |
| CviQI | GTAC | 3 cut(s) | 489, 661, 934 |
| DdeI | CTNAG | 5 cut(s) | 209, 552, 606, 666, 917 |
| DpnI | GATC | 3 cut(s) | 135, 230, 512 |
| DpnII | GATC | 3 cut(s) | 133, 228, 510 |
| DraIII | CACNNNGTG | 1 cut(s) | 866 |
| Eam1104I | CTCTTC | 2 cut(s) | 258, 378 |
| EarI | CTCTTC | 2 cut(s) | 258, 378 |
| Eco130I | CCWWGG | 2 cut(s) | 839, 978 |
| Eco24I | GRGCYC | 1 cut(s) | 698 |
| Eco47I | GGWCC | 1 cut(s) | 913 |
| Eco47III | AGCGCT | 2 cut(s) | 258, 269 |
| Eco57I | CTGAAG | 1 cut(s) | 1017 |
| Eco81I | CCTNAGG | 1 cut(s) | 917 |
| Eco91I | GGTNACC | 1 cut(s) | 67 |
| EcoO109I | RGGNCCY | 1 cut(s) | 913 |
| EcoO65I | GGTNACC | 1 cut(s) | 67 |
| EcoRII | CCWGG | 1 cut(s) | 714 |
| EcoT14I | CCWWGG | 2 cut(s) | 839, 978 |
| EcoT38I | GRGCYC | 1 cut(s) | 698 |
| ErhI | CCWWGG | 2 cut(s) | 839, 978 |
| FaeI | CATG | 9 cut(s) | 34, 167, 391, 563, 620, 683, 750, 770, 982 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 921, 953 |
| FaqI | GGGAC | 2 cut(s) | 690, 699 |
| FatI | CATG | 9 cut(s) | 30, 163, 387, 559, 616, 679, 746, 766, 978 |
| FauI | CCCGC | 1 cut(s) | 858 |
| FauNDI | CATATG | 1 cut(s) | 195 |
| Fnu4HI | GCNGC | 1 cut(s) | 1020 |
| FokI | GGATG | 1 cut(s) | 1028 |
| FriOI | GRGCYC | 1 cut(s) | 698 |
| Fsp4HI | GCNGC | 1 cut(s) | 1020 |
| FspBI | CTAG | 4 cut(s) | 15, 260, 792, 840 |
| GlaI | GCGC | 3 cut(s) | 207, 258, 269 |
| GluI | GCNGC | 1 cut(s) | 1020 |
| GsuI | CTGGAG | 2 cut(s) | 236, 513 |
| HaeII | RGCGCY | 3 cut(s) | 209, 260, 271 |
| HaeIII | GGCC | 2 cut(s) | 595, 696 |
| HapII | CCGG | 1 cut(s) | 131 |
| HgaI | GACGC | 1 cut(s) | 198 |
| HhaI | GCGC | 3 cut(s) | 208, 259, 270 |
| Hin1I | GRCGYC | 1 cut(s) | 190 |
| Hin1II | CATG | 9 cut(s) | 34, 167, 391, 563, 620, 683, 750, 770, 982 |
| Hin6I | GCGC | 3 cut(s) | 206, 257, 268 |
| HinP1I | GCGC | 3 cut(s) | 206, 257, 268 |
| HinfI | GANTC | 4 cut(s) | 18, 38, 287, 495 |
| HpaII | CCGG | 1 cut(s) | 131 |
| HphI | GGTGA | 1 cut(s) | 967 |
| Hpy166II | GTNNAC | 4 cut(s) | 404, 860, 869, 934 |
| Hpy188I | TCNGA | 2 cut(s) | 52, 212 |
| Hpy188III | TCNNGA | 6 cut(s) | 118, 181, 232, 514, 574, 617 |
| Hpy8I | GTNNAC | 4 cut(s) | 404, 860, 869, 934 |
| Hpy99I | CGWCG | 1 cut(s) | 192 |
| HpyAV | CCTTC | 3 cut(s) | 301, 460, 713 |
| HpyCH4III | ACNGT | 3 cut(s) | 62, 384, 488 |
| HpyCH4IV | ACGT | 2 cut(s) | 688, 856 |
| HpyCH4V | TGCA | 8 cut(s) | 239, 635, 651, 860, 869, 941, 1009, 1019 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 265, 866 |
| HpyF3I | CTNAG | 5 cut(s) | 209, 552, 606, 666, 917 |
| HpySE526I | ACGT | 2 cut(s) | 688, 856 |
| Hsp92I | GRCGYC | 1 cut(s) | 190 |
| Hsp92II | CATG | 9 cut(s) | 34, 167, 391, 563, 620, 683, 750, 770, 982 |
| HspAI | GCGC | 3 cut(s) | 206, 257, 268 |
| KpnI | GGTACC | 1 cut(s) | 664 |
| Kzo9I | GATC | 3 cut(s) | 133, 228, 510 |
| LguI | GCTCTTC | 2 cut(s) | 258, 378 |
| LmnI | GCTCC | 1 cut(s) | 655 |
| Lsp1109I | GCAGC | 1 cut(s) | 1031 |
| LweI | GCATC | 2 cut(s) | 174, 1006 |
| MaeI | CTAG | 4 cut(s) | 15, 260, 792, 840 |
| MaeII | ACGT | 2 cut(s) | 688, 856 |
| MaeIII | GTNAC | 1 cut(s) | 67 |
| MalI | GATC | 3 cut(s) | 135, 230, 512 |
| MbiI | CCGCTC | 1 cut(s) | 658 |
| MboI | GATC | 3 cut(s) | 133, 228, 510 |
| MboII | GAAGA | 7 cut(s) | 275, 365, 956, 959, 962, 965, 1010 |
| MflI | RGATCY | 1 cut(s) | 133 |
| MhlI | GDGCHC | 3 cut(s) | 698, 862, 871 |
| MluCI | AATT | 6 cut(s) | 361, 429, 580, 586, 625, 875 |
| MlyI | GAGTC | 3 cut(s) | 12, 32, 504 |
| MseI | TTAA | 2 cut(s) | 312, 878 |
| MslI | CAYNNNNRTG | 3 cut(s) | 572, 897, 1014 |
| MspI | CCGG | 1 cut(s) | 131 |
| MspR9I | CCNGG | 2 cut(s) | 131, 716 |
| Mva1269I | GAATGC | 2 cut(s) | 241, 851 |
| MvaI | CCWGG | 1 cut(s) | 716 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 265, 866 |
| NciI | CCSGG | 1 cut(s) | 131 |
| NcoI | CCATGG | 1 cut(s) | 978 |
| NdeI | CATATG | 1 cut(s) | 195 |
| NdeII | GATC | 3 cut(s) | 133, 228, 510 |
| NlaIII | CATG | 9 cut(s) | 34, 167, 391, 563, 620, 683, 750, 770, 982 |
| NlaIV | GGNNCC | 3 cut(s) | 662, 696, 829 |
| NspI | RCATGY | 2 cut(s) | 167, 750 |
| PaeI | GCATGC | 1 cut(s) | 167 |
| PagI | TCATGA | 1 cut(s) | 616 |
| PciI | ACATGT | 1 cut(s) | 746 |
| PciSI | GCTCTTC | 2 cut(s) | 258, 378 |
| PctI | GAATGC | 2 cut(s) | 241, 851 |
| PfeI | GAWTC | 1 cut(s) | 287 |
| PkrI | GCNGC | 1 cut(s) | 1021 |
| PleI | GAGTC | 3 cut(s) | 12, 32, 503 |
| PpsI | GAGTC | 3 cut(s) | 12, 32, 503 |
| PpuMI | RGGWCCY | 1 cut(s) | 913 |
| PscI | ACATGT | 1 cut(s) | 746 |
| PsiI | TTATAA | 2 cut(s) | 585, 630 |
| Psp5II | RGGWCCY | 1 cut(s) | 913 |
| Psp6I | CCWGG | 1 cut(s) | 714 |
| PspEI | GGTNACC | 1 cut(s) | 67 |
| PspGI | CCWGG | 1 cut(s) | 714 |
| PspN4I | GGNNCC | 3 cut(s) | 662, 696, 829 |
| PspOMI | GGGCCC | 1 cut(s) | 694 |
| PspPI | GGNCC | 4 cut(s) | 594, 694, 695, 913 |
| PspPPI | RGGWCCY | 1 cut(s) | 913 |
| PsuI | RGATCY | 1 cut(s) | 133 |
| RsaI | GTAC | 3 cut(s) | 490, 662, 935 |
| RsaNI | GTAC | 3 cut(s) | 489, 661, 934 |
| RseI | CAYNNNNRTG | 3 cut(s) | 572, 897, 1014 |
| SapI | GCTCTTC | 2 cut(s) | 258, 378 |
| SaqAI | TTAA | 2 cut(s) | 312, 878 |
| SatI | GCNGC | 1 cut(s) | 1020 |
| Sau3AI | GATC | 3 cut(s) | 133, 228, 510 |
| Sau96I | GGNCC | 4 cut(s) | 594, 694, 695, 913 |
| SchI | GAGTC | 3 cut(s) | 12, 32, 504 |
| ScrFI | CCNGG | 2 cut(s) | 131, 716 |
| SduI | GDGCHC | 3 cut(s) | 698, 862, 871 |
| SfaNI | GCATC | 2 cut(s) | 174, 1006 |
| SfcI | CTRYAG | 1 cut(s) | 546 |
| SinI | GGWCC | 1 cut(s) | 913 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 572, 897, 1014 |
| SmlI | CTYRAG | 1 cut(s) | 168 |
| SmoI | CTYRAG | 1 cut(s) | 168 |
| SphI | GCATGC | 1 cut(s) | 167 |
| Sse9I | AATT | 6 cut(s) | 361, 429, 580, 586, 625, 875 |
| SsiI | CCGC | 3 cut(s) | 658, 706, 851 |
| SspI | AATATT | 1 cut(s) | 105 |
| SspMI | CTAG | 4 cut(s) | 15, 260, 792, 840 |
| StyD4I | CCNGG | 2 cut(s) | 129, 714 |
| StyI | CCWWGG | 2 cut(s) | 839, 978 |
| TaaI | ACNGT | 3 cut(s) | 62, 384, 488 |
| TaiI | ACGT | 2 cut(s) | 691, 859 |
| TaqI | TCGA | 2 cut(s) | 21, 227 |
| TasI | AATT | 6 cut(s) | 361, 429, 580, 586, 625, 875 |
| TfiI | GAWTC | 1 cut(s) | 287 |
| Tru1I | TTAA | 2 cut(s) | 312, 878 |
| Tru9I | TTAA | 2 cut(s) | 312, 878 |
| TseI | GCWGC | 1 cut(s) | 1019 |
| TspDTI | ATGAA | 5 cut(s) | 24, 450, 512, 605, 1017 |
| TspGWI | ACGGA | 1 cut(s) | 523 |
| VneI | GTGCAC | 2 cut(s) | 858, 867 |
| VpaK11BI | GGWCC | 1 cut(s) | 913 |
| XceI | RCATGY | 2 cut(s) | 167, 750 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 722 |
| XmaJI | CCTAGG | 1 cut(s) | 839 |
| XspI | CTAG | 4 cut(s) | 15, 260, 792, 840 |