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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 573, 731 |
| AccI | GTMKAC | 1 cut(s) | 602 |
| AciI | CCGC | 3 cut(s) | 250, 652, 873 |
| AclWI | GGATC | 3 cut(s) | 440, 510, 614 |
| AcoI | YGGCCR | 1 cut(s) | 718 |
| AcsI | RAATTY | 1 cut(s) | 317 |
| AcyI | GRCGYC | 2 cut(s) | 574, 732 |
| AdeI | CACNNNGTG | 1 cut(s) | 913 |
| AfaI | GTAC | 1 cut(s) | 137 |
| AflII | CTTAAG | 1 cut(s) | 596 |
| AgsI | TTSAA | 2 cut(s) | 265, 769 |
| AjiI | CACGTC | 1 cut(s) | 25 |
| AjnI | CCWGG | 1 cut(s) | 18 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 177, 209 |
| AluBI | AGCT | 5 cut(s) | 44, 451, 461, 854, 905 |
| AluI | AGCT | 5 cut(s) | 44, 451, 461, 854, 905 |
| Alw21I | GWGCWC | 3 cut(s) | 453, 670, 856 |
| Alw26I | GTCTC | 2 cut(s) | 181, 385 |
| AlwI | GGATC | 3 cut(s) | 440, 510, 614 |
| AoxI | GGCC | 1 cut(s) | 718 |
| ApeKI | GCWGC | 1 cut(s) | 68 |
| ApoI | RAATTY | 1 cut(s) | 317 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 294 |
| AspLEI | GCGC | 3 cut(s) | 576, 734, 775 |
| AsuHPI | GGTGA | 1 cut(s) | 862 |
| BalI | TGGCCA | 1 cut(s) | 720 |
| BanI | GGYRCC | 2 cut(s) | 573, 731 |
| BanII | GRGCYC | 2 cut(s) | 453, 856 |
| BauI | CACGAG | 1 cut(s) | 855 |
| BbsI | GAAGAC | 2 cut(s) | 162, 365 |
| Bbv12I | GWGCWC | 3 cut(s) | 453, 670, 856 |
| BbvI | GCAGC | 1 cut(s) | 80 |
| BccI | CCATC | 4 cut(s) | 104, 231, 385, 759 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 404, 438 |
| BciT130I | CCWGG | 1 cut(s) | 20 |
| BcoDI | GTCTC | 2 cut(s) | 181, 385 |
| BfaI | CTAG | 1 cut(s) | 15 |
| BfoI | RGCGCY | 3 cut(s) | 577, 735, 776 |
| BfrI | CTTAAG | 1 cut(s) | 596 |
| BisI | GCNGC | 1 cut(s) | 69 |
| BlsI | GCNGC | 1 cut(s) | 70 |
| Bme1390I | CCNGG | 1 cut(s) | 20 |
| BmgBI | CACGTC | 1 cut(s) | 25 |
| BmiI | GGNNCC | 3 cut(s) | 575, 674, 733 |
| BmrFI | CCNGG | 1 cut(s) | 20 |
| BmsI | GCATC | 1 cut(s) | 331 |
| BpiI | GAAGAC | 2 cut(s) | 162, 365 |
| BpmI | CTGGAG | 1 cut(s) | 116 |
| BpuEI | CTTGAG | 1 cut(s) | 29 |
| Bsa29I | ATCGAT | 1 cut(s) | 414 |
| BsaHI | GRCGYC | 2 cut(s) | 574, 732 |
| BsaI | GGTCTC | 1 cut(s) | 181 |
| BsaJI | CCNNGG | 1 cut(s) | 519 |
| Bse1I | ACTGG | 1 cut(s) | 133 |
| Bse3DI | GCAATG | 1 cut(s) | 715 |
| BseBI | CCWGG | 1 cut(s) | 20 |
| BseCI | ATCGAT | 1 cut(s) | 414 |
| BseDI | CCNNGG | 1 cut(s) | 519 |
| BseGI | GGATG | 1 cut(s) | 99 |
| BseMI | GCAATG | 1 cut(s) | 715 |
| BseMII | CTCAG | 2 cut(s) | 551, 819 |
| BseNI | ACTGG | 1 cut(s) | 133 |
| BseXI | GCAGC | 1 cut(s) | 80 |
| BshFI | GGCC | 1 cut(s) | 720 |
| BshNI | GGYRCC | 2 cut(s) | 573, 731 |
| BshVI | ATCGAT | 1 cut(s) | 414 |
| BsiHKAI | GWGCWC | 3 cut(s) | 453, 670, 856 |
| BsmAI | GTCTC | 2 cut(s) | 181, 385 |
| BsmBI | CGTCTC | 1 cut(s) | 385 |
| BsnI | GGCC | 1 cut(s) | 720 |
| Bso31I | GGTCTC | 1 cut(s) | 181 |
| Bsp1286I | GDGCHC | 3 cut(s) | 453, 670, 856 |
| Bsp143I | GATC | 6 cut(s) | 333, 432, 515, 619, 925, 937 |
| BspACI | CCGC | 3 cut(s) | 250, 652, 873 |
| BspANI | GGCC | 1 cut(s) | 720 |
| BspCNI | CTCAG | 2 cut(s) | 550, 820 |
| BspDI | ATCGAT | 1 cut(s) | 414 |
| BspHI | TCATGA | 1 cut(s) | 445 |
| BspLI | GGNNCC | 3 cut(s) | 575, 674, 733 |
| BspPI | GGATC | 3 cut(s) | 440, 510, 614 |
| BspT107I | GGYRCC | 2 cut(s) | 573, 731 |
| BspTI | CTTAAG | 1 cut(s) | 596 |
| BspTNI | GGTCTC | 1 cut(s) | 181 |
| BsrDI | GCAATG | 1 cut(s) | 715 |
| BsrI | ACTGG | 1 cut(s) | 133 |
| BssECI | CCNNGG | 1 cut(s) | 519 |
| BssMI | GATC | 6 cut(s) | 333, 432, 515, 619, 925, 937 |
| BssNAI | GTATAC | 1 cut(s) | 603 |
| BssNI | GRCGYC | 2 cut(s) | 574, 732 |
| BssSI | CACGAG | 1 cut(s) | 855 |
| Bst1107I | GTATAC | 1 cut(s) | 603 |
| Bst2BI | CACGAG | 1 cut(s) | 855 |
| Bst2UI | CCWGG | 1 cut(s) | 20 |
| Bst4CI | ACNGT | 1 cut(s) | 34 |
| Bst6I | CTCTTC | 1 cut(s) | 673 |
| BstACI | GRCGYC | 2 cut(s) | 574, 732 |
| BstAFI | CTTAAG | 1 cut(s) | 596 |
| BstC8I | GCNNGC | 3 cut(s) | 42, 666, 841 |
| BstDEI | CTNAG | 5 cut(s) | 73, 399, 537, 564, 828 |
| BstDSI | CCRYGG | 1 cut(s) | 519 |
| BstEII | GGTNACC | 1 cut(s) | 647 |
| BstF5I | GGATG | 1 cut(s) | 99 |
| BstH2I | RGCGCY | 3 cut(s) | 577, 735, 776 |
| BstHHI | GCGC | 3 cut(s) | 576, 734, 775 |
| BstKTI | GATC | 6 cut(s) | 336, 435, 518, 622, 928, 940 |
| BstMAI | GTCTC | 2 cut(s) | 181, 385 |
| BstMBI | GATC | 6 cut(s) | 333, 432, 515, 619, 925, 937 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 56, 65, 580, 770, 902 |
| BstNI | CCWGG | 1 cut(s) | 20 |
| BstPI | GGTNACC | 1 cut(s) | 647 |
| BstSCI | CCNGG | 1 cut(s) | 18 |
| BstV1I | GCAGC | 1 cut(s) | 80 |
| BstV2I | GAAGAC | 2 cut(s) | 162, 365 |
| BstX2I | RGATCY | 1 cut(s) | 515 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 728 |
| BstYI | RGATCY | 1 cut(s) | 515 |
| BstZ17I | GTATAC | 1 cut(s) | 603 |
| Bsu15I | ATCGAT | 1 cut(s) | 414 |
| BsuRI | GGCC | 1 cut(s) | 720 |
| BsuTUI | ATCGAT | 1 cut(s) | 414 |
| BtgI | CCRYGG | 1 cut(s) | 519 |
| BtgZI | GCGATG | 1 cut(s) | 359 |
| BtrI | CACGTC | 1 cut(s) | 25 |
| BtsCI | GGATG | 1 cut(s) | 99 |
| Cac8I | GCNNGC | 3 cut(s) | 42, 666, 841 |
| CciI | TCATGA | 1 cut(s) | 445 |
| CfoI | GCGC | 3 cut(s) | 576, 734, 775 |
| ClaI | ATCGAT | 1 cut(s) | 414 |
| CseI | GACGC | 1 cut(s) | 770 |
| Csp6I | GTAC | 1 cut(s) | 136 |
| CviAII | CATG | 3 cut(s) | 446, 482, 722 |
| CviQI | GTAC | 1 cut(s) | 136 |
| DdeI | CTNAG | 5 cut(s) | 73, 399, 537, 564, 828 |
| DinI | GGCGCC | 2 cut(s) | 575, 733 |
| DpnI | GATC | 6 cut(s) | 335, 434, 517, 621, 927, 939 |
| DpnII | GATC | 6 cut(s) | 333, 432, 515, 619, 925, 937 |
| DraIII | CACNNNGTG | 1 cut(s) | 913 |
| EaeI | YGGCCR | 1 cut(s) | 718 |
| Eam1104I | CTCTTC | 1 cut(s) | 673 |
| EarI | CTCTTC | 1 cut(s) | 673 |
| Ecl136II | GAGCTC | 2 cut(s) | 451, 854 |
| Eco24I | GRGCYC | 2 cut(s) | 453, 856 |
| Eco31I | GGTCTC | 1 cut(s) | 181 |
| Eco53kI | GAGCTC | 2 cut(s) | 451, 854 |
| Eco91I | GGTNACC | 1 cut(s) | 647 |
| EcoICRI | GAGCTC | 2 cut(s) | 451, 854 |
| EcoO65I | GGTNACC | 1 cut(s) | 647 |
| EcoRI | GAATTC | 1 cut(s) | 317 |
| EcoRII | CCWGG | 1 cut(s) | 18 |
| EcoT38I | GRGCYC | 2 cut(s) | 453, 856 |
| EgeI | GGCGCC | 2 cut(s) | 575, 733 |
| EheI | GGCGCC | 2 cut(s) | 575, 733 |
| Esp3I | CGTCTC | 1 cut(s) | 385 |
| FaeI | CATG | 3 cut(s) | 449, 485, 725 |
| FatI | CATG | 3 cut(s) | 445, 481, 721 |
| FauI | CCCGC | 1 cut(s) | 257 |
| FauNDI | CATATG | 1 cut(s) | 117 |
| FblI | GTMKAC | 1 cut(s) | 602 |
| Fnu4HI | GCNGC | 1 cut(s) | 69 |
| FokI | GGATG | 1 cut(s) | 86 |
| FriOI | GRGCYC | 2 cut(s) | 453, 856 |
| Fsp4HI | GCNGC | 1 cut(s) | 69 |
| FspBI | CTAG | 1 cut(s) | 15 |
| GlaI | GCGC | 3 cut(s) | 575, 733, 774 |
| GluI | GCNGC | 1 cut(s) | 69 |
| GsuI | CTGGAG | 1 cut(s) | 116 |
| HaeII | RGCGCY | 3 cut(s) | 577, 735, 776 |
| HaeIII | GGCC | 1 cut(s) | 720 |
| HgaI | GACGC | 1 cut(s) | 770 |
| HhaI | GCGC | 3 cut(s) | 576, 734, 775 |
| Hin1I | GRCGYC | 2 cut(s) | 574, 732 |
| Hin1II | CATG | 3 cut(s) | 449, 485, 725 |
| Hin6I | GCGC | 3 cut(s) | 574, 732, 773 |
| HinP1I | GCGC | 3 cut(s) | 574, 732, 773 |
| HinfI | GANTC | 7 cut(s) | 4, 109, 125, 209, 361, 411, 542 |
| HphI | GGTGA | 1 cut(s) | 862 |
| Hpy166II | GTNNAC | 2 cut(s) | 603, 686 |
| Hpy188I | TCNGA | 3 cut(s) | 289, 619, 829 |
| Hpy8I | GTNNAC | 2 cut(s) | 603, 686 |
| HpyAV | CCTTC | 3 cut(s) | 159, 382, 638 |
| HpyCH4III | ACNGT | 1 cut(s) | 34 |
| HpyCH4IV | ACGT | 4 cut(s) | 24, 201, 613, 688 |
| HpyCH4V | TGCA | 2 cut(s) | 386, 425 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 56, 65, 580, 770, 902 |
| HpyF3I | CTNAG | 5 cut(s) | 73, 399, 537, 564, 828 |
| HpySE526I | ACGT | 4 cut(s) | 24, 201, 613, 688 |
| Hsp92I | GRCGYC | 2 cut(s) | 574, 732 |
| Hsp92II | CATG | 3 cut(s) | 449, 485, 725 |
| HspAI | GCGC | 3 cut(s) | 574, 732, 773 |
| KasI | GGCGCC | 2 cut(s) | 573, 731 |
| Kzo9I | GATC | 6 cut(s) | 333, 432, 515, 619, 925, 937 |
| LmnI | GCTCC | 2 cut(s) | 135, 458 |
| LpnPI | CCDG | 9 cut(s) | 5, 32, 146, 175, 234, 524, 594, 702, 825 |
| Lsp1109I | GCAGC | 1 cut(s) | 80 |
| LweI | GCATC | 1 cut(s) | 331 |
| MaeI | CTAG | 1 cut(s) | 15 |
| MaeII | ACGT | 4 cut(s) | 24, 201, 613, 688 |
| MaeIII | GTNAC | 4 cut(s) | 197, 206, 647, 868 |
| MalI | GATC | 6 cut(s) | 335, 434, 517, 621, 927, 939 |
| MboI | GATC | 6 cut(s) | 333, 432, 515, 619, 925, 937 |
| MboII | GAAGA | 8 cut(s) | 164, 167, 370, 511, 690, 872, 935, 944 |
| MflI | RGATCY | 1 cut(s) | 515 |
| MhlI | GDGCHC | 3 cut(s) | 453, 670, 856 |
| MlsI | TGGCCA | 1 cut(s) | 720 |
| MluCI | AATT | 2 cut(s) | 317, 508 |
| MluNI | TGGCCA | 1 cut(s) | 720 |
| Mly113I | GGCGCC | 2 cut(s) | 574, 732 |
| MlyI | GAGTC | 3 cut(s) | 103, 203, 355 |
| MnlI | CCTC | 8 cut(s) | 70, 563, 571, 674, 694, 698, 724, 786 |
| Mox20I | TGGCCA | 1 cut(s) | 720 |
| MroXI | GAANNNNTTC | 1 cut(s) | 294 |
| MscI | TGGCCA | 1 cut(s) | 720 |
| MseI | TTAA | 4 cut(s) | 303, 311, 597, 744 |
| MslI | CAYNNNNRTG | 3 cut(s) | 104, 726, 756 |
| Msp20I | TGGCCA | 1 cut(s) | 720 |
| MspCI | CTTAAG | 1 cut(s) | 596 |
| MspR9I | CCNGG | 1 cut(s) | 20 |
| MvaI | CCWGG | 1 cut(s) | 20 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 56, 65, 580, 770, 902 |
| NarI | GGCGCC | 2 cut(s) | 574, 732 |
| NdeI | CATATG | 1 cut(s) | 117 |
| NdeII | GATC | 6 cut(s) | 333, 432, 515, 619, 925, 937 |
| NlaIII | CATG | 3 cut(s) | 449, 485, 725 |
| NlaIV | GGNNCC | 3 cut(s) | 575, 674, 733 |
| NmuCI | GTSAC | 2 cut(s) | 206, 868 |
| PagI | TCATGA | 1 cut(s) | 445 |
| PdmI | GAANNNNTTC | 1 cut(s) | 294 |
| PfeI | GAWTC | 4 cut(s) | 4, 125, 411, 542 |
| PkrI | GCNGC | 1 cut(s) | 70 |
| PleI | GAGTC | 3 cut(s) | 103, 203, 355 |
| PluTI | GGCGCC | 2 cut(s) | 577, 735 |
| PpsI | GAGTC | 3 cut(s) | 103, 203, 355 |
| Psp124BI | GAGCTC | 2 cut(s) | 453, 856 |
| Psp6I | CCWGG | 1 cut(s) | 18 |
| PspEI | GGTNACC | 1 cut(s) | 647 |
| PspGI | CCWGG | 1 cut(s) | 18 |
| PspN4I | GGNNCC | 3 cut(s) | 575, 674, 733 |
| PsuI | RGATCY | 1 cut(s) | 515 |
| RsaI | GTAC | 1 cut(s) | 137 |
| RsaNI | GTAC | 1 cut(s) | 136 |
| RseI | CAYNNNNRTG | 3 cut(s) | 104, 726, 756 |
| SacI | GAGCTC | 2 cut(s) | 453, 856 |
| SaqAI | TTAA | 4 cut(s) | 303, 311, 597, 744 |
| SatI | GCNGC | 1 cut(s) | 69 |
| Sau3AI | GATC | 6 cut(s) | 333, 432, 515, 619, 925, 937 |
| SchI | GAGTC | 3 cut(s) | 103, 203, 355 |
| ScrFI | CCNGG | 1 cut(s) | 20 |
| SduI | GDGCHC | 3 cut(s) | 453, 670, 856 |
| SfaNI | GCATC | 1 cut(s) | 331 |
| SfoI | GGCGCC | 2 cut(s) | 575, 733 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 104, 726, 756 |
| SmlI | CTYRAG | 2 cut(s) | 8, 596 |
| SmoI | CTYRAG | 2 cut(s) | 8, 596 |
| Sse9I | AATT | 2 cut(s) | 317, 508 |
| SsiI | CCGC | 3 cut(s) | 250, 652, 873 |
| SspDI | GGCGCC | 2 cut(s) | 573, 731 |
| SspMI | CTAG | 1 cut(s) | 15 |
| SstI | GAGCTC | 2 cut(s) | 453, 856 |
| StyD4I | CCNGG | 1 cut(s) | 18 |
| TaaI | ACNGT | 1 cut(s) | 34 |
| TaiI | ACGT | 4 cut(s) | 27, 204, 616, 691 |
| TaqI | TCGA | 6 cut(s) | 183, 409, 414, 512, 792, 814 |
| TasI | AATT | 2 cut(s) | 317, 508 |
| TfiI | GAWTC | 4 cut(s) | 4, 125, 411, 542 |
| Tru1I | TTAA | 4 cut(s) | 303, 311, 597, 744 |
| Tru9I | TTAA | 4 cut(s) | 303, 311, 597, 744 |
| TseFI | GTSAC | 2 cut(s) | 206, 868 |
| TseI | GCWGC | 1 cut(s) | 68 |
| Tsp45I | GTSAC | 2 cut(s) | 206, 868 |
| TspDTI | ATGAA | 4 cut(s) | 161, 165, 434, 479 |
| TspGWI | ACGGA | 4 cut(s) | 194, 445, 508, 685 |
| Vha464I | CTTAAG | 1 cut(s) | 596 |
| XapI | RAATTY | 1 cut(s) | 317 |
| XmiI | GTMKAC | 1 cut(s) | 602 |
| XmnI | GAANNNNTTC | 1 cut(s) | 294 |
| XspI | CTAG | 1 cut(s) | 15 |