gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 2 cut(s) | 32, 150 |
| AciI | CCGC | 1 cut(s) | 132 |
| AclWI | GGATC | 2 cut(s) | 153, 215 |
| AcsI | RAATTY | 1 cut(s) | 23 |
| AcuI | CTGAAG | 1 cut(s) | 74 |
| AfaI | GTAC | 1 cut(s) | 344 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 64 |
| AgsI | TTSAA | 4 cut(s) | 196, 320, 328, 447 |
| AluBI | AGCT | 3 cut(s) | 232, 290, 369 |
| AluI | AGCT | 3 cut(s) | 232, 290, 369 |
| Alw21I | GWGCWC | 1 cut(s) | 292 |
| AlwI | GGATC | 2 cut(s) | 153, 215 |
| Ama87I | CYCGRG | 1 cut(s) | 227 |
| AoxI | GGCC | 1 cut(s) | 93 |
| ApoI | RAATTY | 1 cut(s) | 23 |
| AspLEI | GCGC | 3 cut(s) | 34, 152, 315 |
| AspS9I | GGNCC | 1 cut(s) | 67 |
| AsuHPI | GGTGA | 1 cut(s) | 401 |
| AvaI | CYCGRG | 1 cut(s) | 227 |
| AvaII | GGWCC | 1 cut(s) | 67 |
| BanII | GRGCYC | 1 cut(s) | 292 |
| Bbv12I | GWGCWC | 1 cut(s) | 292 |
| BfaI | CTAG | 3 cut(s) | 71, 285, 416 |
| Bme18I | GGWCC | 1 cut(s) | 67 |
| BmeT110I | CYCGRG | 1 cut(s) | 227 |
| BmgT120I | GGNCC | 1 cut(s) | 67 |
| BmiI | GGNNCC | 1 cut(s) | 68 |
| BmsI | GCATC | 1 cut(s) | 143 |
| Bpu10I | CCTNAGC | 1 cut(s) | 244 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 64 |
| BseGI | GGATG | 2 cut(s) | 134, 277 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 64 |
| BseYI | CCCAGC | 1 cut(s) | 138 |
| Bsh1236I | CGCG | 2 cut(s) | 32, 150 |
| BshFI | GGCC | 1 cut(s) | 95 |
| BsiHKAI | GWGCWC | 1 cut(s) | 292 |
| BsiHKCI | CYCGRG | 1 cut(s) | 227 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 64 |
| BsnI | GGCC | 1 cut(s) | 95 |
| BsoBI | CYCGRG | 1 cut(s) | 227 |
| Bsp1286I | GDGCHC | 1 cut(s) | 292 |
| Bsp143I | GATC | 3 cut(s) | 145, 162, 220 |
| BspACI | CCGC | 1 cut(s) | 132 |
| BspANI | GGCC | 1 cut(s) | 95 |
| BspFNI | CGCG | 2 cut(s) | 32, 150 |
| BspLI | GGNNCC | 1 cut(s) | 68 |
| BspPI | GGATC | 2 cut(s) | 153, 215 |
| BssMI | GATC | 3 cut(s) | 145, 162, 220 |
| Bst4CI | ACNGT | 2 cut(s) | 334, 465 |
| Bst6I | CTCTTC | 1 cut(s) | 399 |
| BstDEI | CTNAG | 1 cut(s) | 244 |
| BstF5I | GGATG | 2 cut(s) | 134, 277 |
| BstFNI | CGCG | 2 cut(s) | 32, 150 |
| BstHHI | GCGC | 3 cut(s) | 34, 152, 315 |
| BstKTI | GATC | 3 cut(s) | 148, 165, 223 |
| BstMBI | GATC | 3 cut(s) | 145, 162, 220 |
| BstNSI | RCATGY | 1 cut(s) | 454 |
| BstUI | CGCG | 2 cut(s) | 32, 150 |
| BstX2I | RGATCY | 1 cut(s) | 220 |
| BstYI | RGATCY | 1 cut(s) | 220 |
| BsuRI | GGCC | 1 cut(s) | 95 |
| BtsCI | GGATG | 2 cut(s) | 134, 277 |
| BtsIMutI | CAGTG | 1 cut(s) | 339 |
| CfoI | GCGC | 3 cut(s) | 34, 152, 315 |
| Cfr13I | GGNCC | 1 cut(s) | 67 |
| Csp6I | GTAC | 1 cut(s) | 343 |
| CviAII | CATG | 3 cut(s) | 160, 185, 451 |
| CviJI | RGCY | 7 cut(s) | 95, 158, 232, 242, 248, 290, 369 |
| CviKI_1 | RGCY | 7 cut(s) | 95, 158, 232, 242, 248, 290, 369 |
| CviQI | GTAC | 1 cut(s) | 343 |
| DdeI | CTNAG | 1 cut(s) | 244 |
| DpnI | GATC | 3 cut(s) | 147, 164, 222 |
| DpnII | GATC | 3 cut(s) | 145, 162, 220 |
| Eam1104I | CTCTTC | 1 cut(s) | 399 |
| EarI | CTCTTC | 1 cut(s) | 399 |
| Ecl136II | GAGCTC | 1 cut(s) | 290 |
| Eco147I | AGGCCT | 1 cut(s) | 95 |
| Eco24I | GRGCYC | 1 cut(s) | 292 |
| Eco47I | GGWCC | 1 cut(s) | 67 |
| Eco53kI | GAGCTC | 1 cut(s) | 290 |
| Eco57I | CTGAAG | 1 cut(s) | 74 |
| Eco88I | CYCGRG | 1 cut(s) | 227 |
| EcoICRI | GAGCTC | 1 cut(s) | 290 |
| EcoO109I | RGGNCCY | 1 cut(s) | 67 |
| EcoT38I | GRGCYC | 1 cut(s) | 292 |
| FaeI | CATG | 3 cut(s) | 163, 188, 454 |
| FaiI | YATR | 6 cut(s) | 161, 180, 186, 258, 297, 452 |
| FatI | CATG | 3 cut(s) | 159, 184, 450 |
| FokI | GGATG | 2 cut(s) | 121, 284 |
| FriOI | GRGCYC | 1 cut(s) | 292 |
| FspBI | CTAG | 3 cut(s) | 71, 285, 416 |
| GlaI | GCGC | 3 cut(s) | 33, 151, 314 |
| GsaI | CCCAGC | 1 cut(s) | 142 |
| HaeIII | GGCC | 1 cut(s) | 95 |
| HhaI | GCGC | 3 cut(s) | 34, 152, 315 |
| Hin1II | CATG | 3 cut(s) | 163, 188, 454 |
| Hin6I | GCGC | 3 cut(s) | 32, 150, 313 |
| HinP1I | GCGC | 3 cut(s) | 32, 150, 313 |
| HinfI | GANTC | 1 cut(s) | 304 |
| HphI | GGTGA | 1 cut(s) | 401 |
| Hpy188I | TCNGA | 1 cut(s) | 362 |
| Hpy188III | TCNNGA | 2 cut(s) | 79, 320 |
| HpyAV | CCTTC | 5 cut(s) | 98, 116, 182, 326, 331 |
| HpyCH4III | ACNGT | 2 cut(s) | 334, 465 |
| HpyCH4V | TGCA | 1 cut(s) | 460 |
| HpyF3I | CTNAG | 1 cut(s) | 244 |
| Hsp92II | CATG | 3 cut(s) | 163, 188, 454 |
| HspAI | GCGC | 3 cut(s) | 32, 150, 313 |
| Kzo9I | GATC | 3 cut(s) | 145, 162, 220 |
| LmnI | GCTCC | 2 cut(s) | 374, 459 |
| LpnPI | CCDG | 3 cut(s) | 77, 128, 152 |
| LweI | GCATC | 1 cut(s) | 143 |
| MaeI | CTAG | 3 cut(s) | 71, 285, 416 |
| MalI | GATC | 3 cut(s) | 147, 164, 222 |
| MboI | GATC | 3 cut(s) | 145, 162, 220 |
| MboII | GAAGA | 2 cut(s) | 161, 416 |
| MflI | RGATCY | 1 cut(s) | 220 |
| MhlI | GDGCHC | 1 cut(s) | 292 |
| MluCI | AATT | 5 cut(s) | 17, 23, 52, 346, 363 |
| MlyI | GAGTC | 1 cut(s) | 298 |
| MnlI | CCTC | 2 cut(s) | 106, 218 |
| MseI | TTAA | 1 cut(s) | 377 |
| MslI | CAYNNNNRTG | 1 cut(s) | 183 |
| MvnI | CGCG | 2 cut(s) | 32, 150 |
| NdeII | GATC | 3 cut(s) | 145, 162, 220 |
| NlaIII | CATG | 3 cut(s) | 163, 188, 454 |
| NlaIV | GGNNCC | 1 cut(s) | 68 |
| NspI | RCATGY | 1 cut(s) | 454 |
| PaeR7I | CTCGAG | 1 cut(s) | 227 |
| PceI | AGGCCT | 1 cut(s) | 95 |
| PleI | GAGTC | 1 cut(s) | 298 |
| PpsI | GAGTC | 1 cut(s) | 298 |
| PpuMI | RGGWCCY | 1 cut(s) | 67 |
| Psp124BI | GAGCTC | 1 cut(s) | 292 |
| Psp5II | RGGWCCY | 1 cut(s) | 67 |
| PspFI | CCCAGC | 1 cut(s) | 138 |
| PspN4I | GGNNCC | 1 cut(s) | 68 |
| PspPI | GGNCC | 1 cut(s) | 67 |
| PspPPI | RGGWCCY | 1 cut(s) | 67 |
| PspXI | VCTCGAGB | 1 cut(s) | 227 |
| PsuI | RGATCY | 1 cut(s) | 220 |
| RsaI | GTAC | 1 cut(s) | 344 |
| RsaNI | GTAC | 1 cut(s) | 343 |
| RseI | CAYNNNNRTG | 1 cut(s) | 183 |
| SacI | GAGCTC | 1 cut(s) | 292 |
| SaqAI | TTAA | 1 cut(s) | 377 |
| Sau3AI | GATC | 3 cut(s) | 145, 162, 220 |
| Sau96I | GGNCC | 1 cut(s) | 67 |
| SchI | GAGTC | 1 cut(s) | 298 |
| SduI | GDGCHC | 1 cut(s) | 292 |
| SetI | ASST | 6 cut(s) | 60, 90, 210, 234, 292, 371 |
| SfaNI | GCATC | 1 cut(s) | 143 |
| Sfr274I | CTCGAG | 1 cut(s) | 227 |
| SinI | GGWCC | 1 cut(s) | 67 |
| SlaI | CTCGAG | 1 cut(s) | 227 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 183 |
| SmlI | CTYRAG | 1 cut(s) | 227 |
| SmoI | CTYRAG | 1 cut(s) | 227 |
| Sse9I | AATT | 5 cut(s) | 17, 23, 52, 346, 363 |
| SseBI | AGGCCT | 1 cut(s) | 95 |
| SsiI | CCGC | 1 cut(s) | 132 |
| SspMI | CTAG | 3 cut(s) | 71, 285, 416 |
| SstI | GAGCTC | 1 cut(s) | 292 |
| StuI | AGGCCT | 1 cut(s) | 95 |
| TaaI | ACNGT | 2 cut(s) | 334, 465 |
| TaqI | TCGA | 3 cut(s) | 36, 78, 228 |
| TasI | AATT | 5 cut(s) | 17, 23, 52, 346, 363 |
| TatI | WGTACW | 1 cut(s) | 342 |
| Tru1I | TTAA | 1 cut(s) | 377 |
| Tru9I | TTAA | 1 cut(s) | 377 |
| TscAI | CASTG | 1 cut(s) | 339 |
| TspDTI | ATGAA | 2 cut(s) | 201, 312 |
| TspRI | CASTG | 1 cut(s) | 339 |
| VpaK11BI | GGWCC | 1 cut(s) | 67 |
| XapI | RAATTY | 1 cut(s) | 23 |
| XceI | RCATGY | 1 cut(s) | 454 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 231 |
| XhoI | CTCGAG | 1 cut(s) | 227 |
| XspI | CTAG | 3 cut(s) | 71, 285, 416 |