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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 44 |
| AclWI | GGATC | 2 cut(s) | 61, 74 |
| AcsI | RAATTY | 1 cut(s) | 380 |
| AcuI | CTGAAG | 2 cut(s) | 159, 234 |
| AgsI | TTSAA | 2 cut(s) | 259, 328 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 226 |
| AjnI | CCWGG | 2 cut(s) | 69, 318 |
| AluBI | AGCT | 5 cut(s) | 19, 82, 212, 397, 407 |
| AluI | AGCT | 5 cut(s) | 19, 82, 212, 397, 407 |
| Alw21I | GWGCWC | 1 cut(s) | 399 |
| AlwI | GGATC | 2 cut(s) | 61, 74 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 407 |
| Aor13HI | TCCGGA | 1 cut(s) | 44 |
| ApeKI | GCWGC | 1 cut(s) | 460 |
| ApoI | RAATTY | 1 cut(s) | 380 |
| AseI | ATTAAT | 1 cut(s) | 117 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 425 |
| AspS9I | GGNCC | 3 cut(s) | 220, 228, 454 |
| AsuHPI | GGTGA | 1 cut(s) | 124 |
| AvaII | GGWCC | 3 cut(s) | 220, 228, 454 |
| BamHI | GGATCC | 1 cut(s) | 66 |
| BanII | GRGCYC | 1 cut(s) | 399 |
| Bbv12I | GWGCWC | 1 cut(s) | 399 |
| BbvI | GCAGC | 1 cut(s) | 472 |
| BccI | CCATC | 1 cut(s) | 270 |
| BciT130I | CCWGG | 2 cut(s) | 71, 320 |
| BfaI | CTAG | 2 cut(s) | 245, 489 |
| BfmI | CTRYAG | 2 cut(s) | 358, 458 |
| BisI | GCNGC | 1 cut(s) | 461 |
| BlsI | GCNGC | 1 cut(s) | 462 |
| Bme1390I | CCNGG | 2 cut(s) | 71, 320 |
| Bme18I | GGWCC | 3 cut(s) | 220, 228, 454 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 226 |
| BmgT120I | GGNCC | 3 cut(s) | 220, 228, 454 |
| BmiI | GGNNCC | 3 cut(s) | 68, 222, 230 |
| BmrFI | CCNGG | 2 cut(s) | 71, 320 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 332, 364, 381, 413 |
| BpuEI | CTTGAG | 1 cut(s) | 179 |
| BsaBI | GATNNNNATC | 1 cut(s) | 167 |
| BsaJI | CCNNGG | 1 cut(s) | 224 |
| BsaWI | WCCGGW | 1 cut(s) | 44 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 424, 454 |
| Bse1I | ACTGG | 1 cut(s) | 305 |
| Bse8I | GATNNNNATC | 1 cut(s) | 167 |
| BseAI | TCCGGA | 1 cut(s) | 44 |
| BseBI | CCWGG | 2 cut(s) | 71, 320 |
| BseDI | CCNNGG | 1 cut(s) | 224 |
| BseGI | GGATG | 1 cut(s) | 79 |
| BseJI | GATNNNNATC | 1 cut(s) | 167 |
| BseNI | ACTGG | 1 cut(s) | 305 |
| BseXI | GCAGC | 1 cut(s) | 472 |
| BsiHKAI | GWGCWC | 1 cut(s) | 399 |
| BsiSI | CCGG | 1 cut(s) | 45 |
| BslFI | GGGAC | 1 cut(s) | 214 |
| BsmFI | GGGAC | 1 cut(s) | 214 |
| Bsp1286I | GDGCHC | 1 cut(s) | 399 |
| Bsp13I | TCCGGA | 1 cut(s) | 44 |
| Bsp143I | GATC | 3 cut(s) | 66, 107, 409 |
| BspEI | TCCGGA | 1 cut(s) | 44 |
| BspLI | GGNNCC | 3 cut(s) | 68, 222, 230 |
| BspMAI | CTGCAG | 1 cut(s) | 462 |
| BspPI | GGATC | 2 cut(s) | 61, 74 |
| BspQI | GCTCTTC | 2 cut(s) | 243, 387 |
| BsrI | ACTGG | 1 cut(s) | 305 |
| BssECI | CCNNGG | 1 cut(s) | 224 |
| BssMI | GATC | 3 cut(s) | 66, 107, 409 |
| Bst2UI | CCWGG | 2 cut(s) | 71, 320 |
| Bst4CI | ACNGT | 2 cut(s) | 228, 334 |
| Bst6I | CTCTTC | 3 cut(s) | 210, 243, 387 |
| BstDSI | CCRYGG | 1 cut(s) | 224 |
| BstF5I | GGATG | 1 cut(s) | 79 |
| BstKTI | GATC | 3 cut(s) | 69, 110, 412 |
| BstMBI | GATC | 3 cut(s) | 66, 107, 409 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 301 |
| BstNI | CCWGG | 2 cut(s) | 71, 320 |
| BstSCI | CCNGG | 2 cut(s) | 69, 318 |
| BstSFI | CTRYAG | 2 cut(s) | 358, 458 |
| BstV1I | GCAGC | 1 cut(s) | 472 |
| BstX2I | RGATCY | 1 cut(s) | 66 |
| BstYI | RGATCY | 1 cut(s) | 66 |
| BtgI | CCRYGG | 1 cut(s) | 224 |
| BtsCI | GGATG | 1 cut(s) | 79 |
| CaiI | CAGNNNCTG | 1 cut(s) | 407 |
| Cfr13I | GGNCC | 3 cut(s) | 220, 228, 454 |
| CviJI | RGCY | 6 cut(s) | 19, 82, 158, 212, 397, 407 |
| CviKI_1 | RGCY | 6 cut(s) | 19, 82, 158, 212, 397, 407 |
| DpnI | GATC | 3 cut(s) | 68, 109, 411 |
| DpnII | GATC | 3 cut(s) | 66, 107, 409 |
| DriI | GACNNNNNGTC | 1 cut(s) | 226 |
| Eam1104I | CTCTTC | 3 cut(s) | 210, 243, 387 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 226 |
| EarI | CTCTTC | 3 cut(s) | 210, 243, 387 |
| Ecl136II | GAGCTC | 1 cut(s) | 397 |
| Eco24I | GRGCYC | 1 cut(s) | 399 |
| Eco47I | GGWCC | 3 cut(s) | 220, 228, 454 |
| Eco53kI | GAGCTC | 1 cut(s) | 397 |
| Eco57I | CTGAAG | 2 cut(s) | 159, 234 |
| EcoICRI | GAGCTC | 1 cut(s) | 397 |
| EcoO109I | RGGNCCY | 1 cut(s) | 220 |
| EcoRII | CCWGG | 2 cut(s) | 69, 318 |
| EcoT38I | GRGCYC | 1 cut(s) | 399 |
| FaiI | YATR | 8 cut(s) | 146, 161, 180, 182, 311, 345, 452, 499 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 8, 40 |
| FaqI | GGGAC | 1 cut(s) | 214 |
| FauNDI | CATATG | 1 cut(s) | 180 |
| Fnu4HI | GCNGC | 1 cut(s) | 461 |
| FokI | GGATG | 1 cut(s) | 86 |
| FriOI | GRGCYC | 1 cut(s) | 399 |
| Fsp4HI | GCNGC | 1 cut(s) | 461 |
| FspBI | CTAG | 2 cut(s) | 245, 489 |
| GluI | GCNGC | 1 cut(s) | 461 |
| HapII | CCGG | 1 cut(s) | 45 |
| HindIII | AAGCTT | 1 cut(s) | 17 |
| HinfI | GANTC | 3 cut(s) | 255, 364, 492 |
| HpaII | CCGG | 1 cut(s) | 45 |
| HphI | GGTGA | 1 cut(s) | 124 |
| Hpy188I | TCNGA | 2 cut(s) | 267, 352 |
| Hpy188III | TCNNGA | 4 cut(s) | 45, 172, 245, 328 |
| HpyAV | CCTTC | 4 cut(s) | 42, 142, 445, 453 |
| HpyCH4III | ACNGT | 2 cut(s) | 228, 334 |
| HpyCH4IV | ACGT | 1 cut(s) | 313 |
| HpyCH4V | TGCA | 2 cut(s) | 95, 460 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 301 |
| HpySE526I | ACGT | 1 cut(s) | 313 |
| Kpn2I | TCCGGA | 1 cut(s) | 44 |
| Kzo9I | GATC | 3 cut(s) | 66, 107, 409 |
| LguI | GCTCTTC | 2 cut(s) | 243, 387 |
| LmnI | GCTCC | 1 cut(s) | 87 |
| Lsp1109I | GCAGC | 1 cut(s) | 472 |
| MaeI | CTAG | 2 cut(s) | 245, 489 |
| MaeII | ACGT | 1 cut(s) | 313 |
| MaeIII | GTNAC | 1 cut(s) | 369 |
| MalI | GATC | 3 cut(s) | 68, 109, 411 |
| MboI | GATC | 3 cut(s) | 66, 107, 409 |
| MboII | GAAGA | 4 cut(s) | 152, 227, 260, 404 |
| MflI | RGATCY | 1 cut(s) | 66 |
| MhlI | GDGCHC | 1 cut(s) | 399 |
| MluCI | AATT | 1 cut(s) | 380 |
| MnlI | CCTC | 5 cut(s) | 68, 178, 211, 261, 450 |
| MroI | TCCGGA | 1 cut(s) | 44 |
| MroXI | GAANNNNTTC | 1 cut(s) | 425 |
| MseI | TTAA | 2 cut(s) | 89, 117 |
| MspI | CCGG | 1 cut(s) | 45 |
| MspR9I | CCNGG | 2 cut(s) | 71, 320 |
| MvaI | CCWGG | 2 cut(s) | 71, 320 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 301 |
| NdeI | CATATG | 1 cut(s) | 180 |
| NdeII | GATC | 3 cut(s) | 66, 107, 409 |
| NlaIV | GGNNCC | 3 cut(s) | 68, 222, 230 |
| NmuCI | GTSAC | 1 cut(s) | 369 |
| PciSI | GCTCTTC | 2 cut(s) | 243, 387 |
| PdmI | GAANNNNTTC | 1 cut(s) | 425 |
| PfeI | GAWTC | 3 cut(s) | 255, 364, 492 |
| PfoI | TCCNGGA | 2 cut(s) | 69, 318 |
| PkrI | GCNGC | 1 cut(s) | 462 |
| PpuMI | RGGWCCY | 1 cut(s) | 220 |
| PshBI | ATTAAT | 1 cut(s) | 117 |
| Psp124BI | GAGCTC | 1 cut(s) | 399 |
| Psp5II | RGGWCCY | 1 cut(s) | 220 |
| Psp6I | CCWGG | 2 cut(s) | 69, 318 |
| PspGI | CCWGG | 2 cut(s) | 69, 318 |
| PspN4I | GGNNCC | 3 cut(s) | 68, 222, 230 |
| PspPI | GGNCC | 3 cut(s) | 220, 228, 454 |
| PspPPI | RGGWCCY | 1 cut(s) | 220 |
| PstI | CTGCAG | 1 cut(s) | 462 |
| PstNI | CAGNNNCTG | 1 cut(s) | 407 |
| PsuI | RGATCY | 1 cut(s) | 66 |
| SacI | GAGCTC | 1 cut(s) | 399 |
| SapI | GCTCTTC | 2 cut(s) | 243, 387 |
| SaqAI | TTAA | 2 cut(s) | 89, 117 |
| SatI | GCNGC | 1 cut(s) | 461 |
| Sau3AI | GATC | 3 cut(s) | 66, 107, 409 |
| Sau96I | GGNCC | 3 cut(s) | 220, 228, 454 |
| ScrFI | CCNGG | 2 cut(s) | 71, 320 |
| SduI | GDGCHC | 1 cut(s) | 399 |
| SetI | ASST | 9 cut(s) | 21, 60, 84, 201, 214, 316, 399, 409, 437 |
| SfcI | CTRYAG | 2 cut(s) | 358, 458 |
| SinI | GGWCC | 3 cut(s) | 220, 228, 454 |
| SmlI | CTYRAG | 1 cut(s) | 194 |
| SmoI | CTYRAG | 1 cut(s) | 194 |
| Sse9I | AATT | 1 cut(s) | 380 |
| SspI | AATATT | 1 cut(s) | 206 |
| SspMI | CTAG | 2 cut(s) | 245, 489 |
| SstI | GAGCTC | 1 cut(s) | 399 |
| StyD4I | CCNGG | 2 cut(s) | 69, 318 |
| TaaI | ACNGT | 2 cut(s) | 228, 334 |
| TaiI | ACGT | 1 cut(s) | 316 |
| TaqII | GACCGA | 1 cut(s) | 357 |
| TasI | AATT | 1 cut(s) | 380 |
| TfiI | GAWTC | 3 cut(s) | 255, 364, 492 |
| Tru1I | TTAA | 2 cut(s) | 89, 117 |
| Tru9I | TTAA | 2 cut(s) | 89, 117 |
| TseFI | GTSAC | 1 cut(s) | 369 |
| TseI | GCWGC | 1 cut(s) | 460 |
| Tsp45I | GTSAC | 1 cut(s) | 369 |
| TspDTI | ATGAA | 2 cut(s) | 157, 161 |
| VpaK11BI | GGWCC | 3 cut(s) | 220, 228, 454 |
| VspI | ATTAAT | 1 cut(s) | 117 |
| XapI | RAATTY | 1 cut(s) | 380 |
| XbaI | TCTAGA | 1 cut(s) | 244 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 231 |
| XmnI | GAANNNNTTC | 1 cut(s) | 425 |
| XspI | CTAG | 2 cut(s) | 245, 489 |