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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 378 |
| AciI | CCGC | 1 cut(s) | 581 |
| AclWI | GGATC | 5 cut(s) | 14, 26, 39, 546, 577 |
| AcuI | CTGAAG | 1 cut(s) | 542 |
| AfaI | GTAC | 1 cut(s) | 254 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 349, 596, 626, 653, 707, 734 |
| AflIII | ACRYGT | 1 cut(s) | 381 |
| AjiI | CACGTC | 1 cut(s) | 142 |
| AjnI | CCWGG | 2 cut(s) | 111, 135 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 294, 326 |
| AluBI | AGCT | 3 cut(s) | 161, 167, 520 |
| AluI | AGCT | 3 cut(s) | 161, 167, 520 |
| Alw26I | GTCTC | 2 cut(s) | 298, 394 |
| AlwI | GGATC | 5 cut(s) | 14, 26, 39, 546, 577 |
| ApeKI | GCWGC | 1 cut(s) | 185 |
| AsuC2I | CCSGG | 5 cut(s) | 597, 654, 681, 708, 735 |
| BamHI | GGATCC | 1 cut(s) | 31 |
| BbsI | GAAGAC | 1 cut(s) | 279 |
| BbvI | GCAGC | 1 cut(s) | 197 |
| BccI | CCATC | 1 cut(s) | 221 |
| BciT130I | CCWGG | 2 cut(s) | 113, 137 |
| BcnI | CCSGG | 5 cut(s) | 597, 654, 681, 708, 735 |
| BcoDI | GTCTC | 2 cut(s) | 298, 394 |
| BfaI | CTAG | 4 cut(s) | 68, 132, 344, 751 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 194 |
| BisI | GCNGC | 1 cut(s) | 186 |
| BlsI | GCNGC | 1 cut(s) | 187 |
| Bme1390I | CCNGG | 7 cut(s) | 113, 137, 597, 654, 681, 708, 735 |
| BmgBI | CACGTC | 1 cut(s) | 142 |
| BmiI | GGNNCC | 1 cut(s) | 33 |
| BmrFI | CCNGG | 7 cut(s) | 113, 137, 597, 654, 681, 708, 735 |
| BmsI | GCATC | 4 cut(s) | 411, 460, 481, 516 |
| BpiI | GAAGAC | 1 cut(s) | 279 |
| BpmI | CTGGAG | 1 cut(s) | 233 |
| BpuEI | CTTGAG | 3 cut(s) | 80, 110, 147 |
| BpuMI | CCSGG | 5 cut(s) | 597, 654, 681, 708, 735 |
| BsaI | GGTCTC | 1 cut(s) | 298 |
| BsaJI | CCNNGG | 7 cut(s) | 534, 565, 595, 652, 679, 706, 733 |
| BsaWI | WCCGGW | 1 cut(s) | 626 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 349, 596, 626, 653, 707, 734 |
| Bse1I | ACTGG | 2 cut(s) | 250, 457 |
| BseBI | CCWGG | 2 cut(s) | 113, 137 |
| BseDI | CCNNGG | 7 cut(s) | 534, 565, 595, 652, 679, 706, 733 |
| BseGI | GGATG | 6 cut(s) | 55, 216, 244, 426, 545, 576 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 349, 596, 626, 653, 707, 734 |
| BseNI | ACTGG | 2 cut(s) | 250, 457 |
| BseXI | GCAGC | 1 cut(s) | 197 |
| BsgI | GTGCAG | 1 cut(s) | 377 |
| BsiSI | CCGG | 6 cut(s) | 597, 627, 654, 681, 708, 735 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 349, 596, 626, 653, 707, 734 |
| BsmAI | GTCTC | 2 cut(s) | 298, 394 |
| BsmBI | CGTCTC | 1 cut(s) | 394 |
| Bso31I | GGTCTC | 1 cut(s) | 298 |
| Bsp143I | GATC | 5 cut(s) | 3, 19, 31, 538, 569 |
| BspACI | CCGC | 1 cut(s) | 581 |
| BspLI | GGNNCC | 1 cut(s) | 33 |
| BspPI | GGATC | 5 cut(s) | 14, 26, 39, 546, 577 |
| BspTNI | GGTCTC | 1 cut(s) | 298 |
| BsrI | ACTGG | 2 cut(s) | 250, 457 |
| BssECI | CCNNGG | 7 cut(s) | 534, 565, 595, 652, 679, 706, 733 |
| BssMI | GATC | 5 cut(s) | 3, 19, 31, 538, 569 |
| Bst2UI | CCWGG | 2 cut(s) | 113, 137 |
| Bst4CI | ACNGT | 1 cut(s) | 151 |
| Bst6I | CTCTTC | 1 cut(s) | 42 |
| BstC8I | GCNNGC | 1 cut(s) | 159 |
| BstDEI | CTNAG | 1 cut(s) | 190 |
| BstDSI | CCRYGG | 2 cut(s) | 534, 565 |
| BstF5I | GGATG | 6 cut(s) | 55, 216, 244, 426, 545, 576 |
| BstKTI | GATC | 5 cut(s) | 6, 22, 34, 541, 572 |
| BstMAI | GTCTC | 2 cut(s) | 298, 394 |
| BstMBI | GATC | 5 cut(s) | 3, 19, 31, 538, 569 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 194, 203, 526 |
| BstNI | CCWGG | 2 cut(s) | 113, 137 |
| BstNSI | RCATGY | 1 cut(s) | 385 |
| BstSCI | CCNGG | 7 cut(s) | 111, 135, 595, 652, 679, 706, 733 |
| BstV1I | GCAGC | 1 cut(s) | 197 |
| BstV2I | GAAGAC | 1 cut(s) | 279 |
| BstX2I | RGATCY | 3 cut(s) | 31, 538, 569 |
| BstYI | RGATCY | 3 cut(s) | 31, 538, 569 |
| BtgI | CCRYGG | 2 cut(s) | 534, 565 |
| BtrI | CACGTC | 1 cut(s) | 142 |
| BtsCI | GGATG | 6 cut(s) | 55, 216, 244, 426, 545, 576 |
| Cac8I | GCNNGC | 1 cut(s) | 159 |
| Csp6I | GTAC | 1 cut(s) | 253 |
| CviAII | CATG | 2 cut(s) | 382, 452 |
| CviQI | GTAC | 1 cut(s) | 253 |
| DdeI | CTNAG | 1 cut(s) | 190 |
| DpnI | GATC | 5 cut(s) | 5, 21, 33, 540, 571 |
| DpnII | GATC | 5 cut(s) | 3, 19, 31, 538, 569 |
| Eam1104I | CTCTTC | 1 cut(s) | 42 |
| EarI | CTCTTC | 1 cut(s) | 42 |
| Eco31I | GGTCTC | 1 cut(s) | 298 |
| Eco57I | CTGAAG | 1 cut(s) | 542 |
| EcoRII | CCWGG | 2 cut(s) | 111, 135 |
| Esp3I | CGTCTC | 1 cut(s) | 394 |
| FaeI | CATG | 2 cut(s) | 385, 455 |
| FaiI | YATR | 9 cut(s) | 65, 119, 234, 236, 261, 263, 383, 453, 467 |
| FatI | CATG | 2 cut(s) | 381, 451 |
| FauI | CCCGC | 1 cut(s) | 588 |
| FauNDI | CATATG | 1 cut(s) | 234 |
| FblI | GTMKAC | 1 cut(s) | 378 |
| Fnu4HI | GCNGC | 1 cut(s) | 186 |
| FokI | GGATG | 6 cut(s) | 62, 203, 251, 433, 532, 563 |
| Fsp4HI | GCNGC | 1 cut(s) | 186 |
| FspBI | CTAG | 4 cut(s) | 68, 132, 344, 751 |
| GluI | GCNGC | 1 cut(s) | 186 |
| GsuI | CTGGAG | 1 cut(s) | 233 |
| HapII | CCGG | 6 cut(s) | 597, 627, 654, 681, 708, 735 |
| Hin1II | CATG | 2 cut(s) | 385, 455 |
| HindIII | AAGCTT | 1 cut(s) | 165 |
| HinfI | GANTC | 7 cut(s) | 108, 121, 226, 242, 326, 394, 446 |
| HpaII | CCGG | 6 cut(s) | 597, 627, 654, 681, 708, 735 |
| Hpy166II | GTNNAC | 2 cut(s) | 379, 484 |
| Hpy188III | TCNNGA | 7 cut(s) | 17, 23, 338, 391, 398, 443, 510 |
| Hpy8I | GTNNAC | 2 cut(s) | 379, 484 |
| Hpy99I | CGWCG | 1 cut(s) | 45 |
| HpyAV | CCTTC | 4 cut(s) | 276, 341, 395, 516 |
| HpyCH4III | ACNGT | 1 cut(s) | 151 |
| HpyCH4IV | ACGT | 2 cut(s) | 141, 318 |
| HpyCH4V | TGCA | 5 cut(s) | 358, 424, 473, 494, 529 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 194, 203, 526 |
| HpyF3I | CTNAG | 1 cut(s) | 190 |
| HpySE526I | ACGT | 2 cut(s) | 141, 318 |
| Hsp92II | CATG | 2 cut(s) | 385, 455 |
| Kzo9I | GATC | 5 cut(s) | 3, 19, 31, 538, 569 |
| LmnI | GCTCC | 1 cut(s) | 252 |
| Lsp1109I | GCAGC | 1 cut(s) | 197 |
| LweI | GCATC | 4 cut(s) | 411, 460, 481, 516 |
| MaeI | CTAG | 4 cut(s) | 68, 132, 344, 751 |
| MaeII | ACGT | 2 cut(s) | 141, 318 |
| MaeIII | GTNAC | 1 cut(s) | 323 |
| MalI | GATC | 5 cut(s) | 5, 21, 33, 540, 571 |
| MboI | GATC | 5 cut(s) | 3, 19, 31, 538, 569 |
| MboII | GAAGA | 6 cut(s) | 29, 71, 281, 284, 314, 535 |
| MflI | RGATCY | 3 cut(s) | 31, 538, 569 |
| MlyI | GAGTC | 2 cut(s) | 220, 320 |
| MmeI | TCCRAC | 1 cut(s) | 441 |
| MnlI | CCTC | 9 cut(s) | 45, 64, 187, 346, 401, 472, 654, 681, 708 |
| MslI | CAYNNNNRTG | 1 cut(s) | 237 |
| MspI | CCGG | 6 cut(s) | 597, 627, 654, 681, 708, 735 |
| MspR9I | CCNGG | 7 cut(s) | 113, 137, 597, 654, 681, 708, 735 |
| MvaI | CCWGG | 2 cut(s) | 113, 137 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 194, 203, 526 |
| NciI | CCSGG | 5 cut(s) | 597, 654, 681, 708, 735 |
| NdeI | CATATG | 1 cut(s) | 234 |
| NdeII | GATC | 5 cut(s) | 3, 19, 31, 538, 569 |
| NlaIII | CATG | 2 cut(s) | 385, 455 |
| NlaIV | GGNNCC | 1 cut(s) | 33 |
| NmuCI | GTSAC | 1 cut(s) | 323 |
| NspI | RCATGY | 1 cut(s) | 385 |
| PciI | ACATGT | 1 cut(s) | 381 |
| PfeI | GAWTC | 5 cut(s) | 108, 121, 242, 394, 446 |
| PfoI | TCCNGGA | 1 cut(s) | 111 |
| PkrI | GCNGC | 1 cut(s) | 187 |
| PleI | GAGTC | 2 cut(s) | 220, 320 |
| PpsI | GAGTC | 2 cut(s) | 220, 320 |
| PscI | ACATGT | 1 cut(s) | 381 |
| Psp6I | CCWGG | 2 cut(s) | 111, 135 |
| PspGI | CCWGG | 2 cut(s) | 111, 135 |
| PspN4I | GGNNCC | 1 cut(s) | 33 |
| PsuI | RGATCY | 3 cut(s) | 31, 538, 569 |
| RsaI | GTAC | 1 cut(s) | 254 |
| RsaNI | GTAC | 1 cut(s) | 253 |
| RseI | CAYNNNNRTG | 1 cut(s) | 237 |
| SatI | GCNGC | 1 cut(s) | 186 |
| Sau3AI | GATC | 5 cut(s) | 3, 19, 31, 538, 569 |
| SchI | GAGTC | 2 cut(s) | 220, 320 |
| ScrFI | CCNGG | 7 cut(s) | 113, 137, 597, 654, 681, 708, 735 |
| SfaNI | GCATC | 4 cut(s) | 411, 460, 481, 516 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 237 |
| SmlI | CTYRAG | 3 cut(s) | 95, 125, 162 |
| SmoI | CTYRAG | 3 cut(s) | 95, 125, 162 |
| SsiI | CCGC | 1 cut(s) | 581 |
| SspMI | CTAG | 4 cut(s) | 68, 132, 344, 751 |
| StyD4I | CCNGG | 7 cut(s) | 111, 135, 595, 652, 679, 706, 733 |
| TaaI | ACNGT | 1 cut(s) | 151 |
| TaiI | ACGT | 2 cut(s) | 144, 321 |
| TaqI | TCGA | 4 cut(s) | 43, 300, 392, 509 |
| TfiI | GAWTC | 5 cut(s) | 108, 121, 242, 394, 446 |
| TseFI | GTSAC | 1 cut(s) | 323 |
| TseI | GCWGC | 1 cut(s) | 185 |
| Tsp45I | GTSAC | 1 cut(s) | 323 |
| TspDTI | ATGAA | 2 cut(s) | 278, 282 |
| TspGWI | ACGGA | 3 cut(s) | 311, 427, 433 |
| XceI | RCATGY | 1 cut(s) | 385 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 563 |
| XmiI | GTMKAC | 1 cut(s) | 378 |
| XspI | CTAG | 4 cut(s) | 68, 132, 344, 751 |