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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 270, 315 |
| AccB1I | GGYRCC | 2 cut(s) | 491, 512 |
| AccBSI | CCGCTC | 1 cut(s) | 343 |
| AciI | CCGC | 2 cut(s) | 343, 412 |
| AclWI | GGATC | 2 cut(s) | 374, 387 |
| AcoI | YGGCCR | 1 cut(s) | 478 |
| AcsI | RAATTY | 1 cut(s) | 155 |
| AcvI | CACGTG | 1 cut(s) | 452 |
| AdeI | CACNNNGTG | 2 cut(s) | 437, 542 |
| AfaI | GTAC | 1 cut(s) | 175 |
| AfeI | AGCGCT | 2 cut(s) | 75, 86 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 330, 400, 453, 482, 526 |
| AflIII | ACRYGT | 1 cut(s) | 449 |
| AgsI | TTSAA | 4 cut(s) | 131, 160, 276, 556 |
| AjnI | CCWGG | 1 cut(s) | 475 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 72, 104 |
| AluBI | AGCT | 3 cut(s) | 64, 214, 236 |
| AluI | AGCT | 3 cut(s) | 64, 214, 236 |
| Alw21I | GWGCWC | 1 cut(s) | 547 |
| Alw26I | GTCTC | 1 cut(s) | 168 |
| Alw44I | GTGCAC | 1 cut(s) | 543 |
| AlwI | GGATC | 2 cut(s) | 374, 387 |
| Aor51HI | AGCGCT | 2 cut(s) | 75, 86 |
| AoxI | GGCC | 1 cut(s) | 478 |
| ApaLI | GTGCAC | 1 cut(s) | 543 |
| ApoI | RAATTY | 1 cut(s) | 155 |
| AspA2I | CCTAGG | 1 cut(s) | 524 |
| AspLEI | GCGC | 4 cut(s) | 76, 87, 147, 336 |
| AsuC2I | CCSGG | 1 cut(s) | 401 |
| AsuHPI | GGTGA | 2 cut(s) | 434, 449 |
| AvrII | CCTAGG | 1 cut(s) | 524 |
| BaeGI | GKGCMC | 1 cut(s) | 547 |
| BamHI | GGATCC | 1 cut(s) | 379 |
| BanI | GGYRCC | 2 cut(s) | 491, 512 |
| BbrPI | CACGTG | 1 cut(s) | 452 |
| Bbv12I | GWGCWC | 1 cut(s) | 547 |
| BccI | CCATC | 1 cut(s) | 186 |
| BceAI | ACGGC | 1 cut(s) | 465 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 167, 201 |
| BciT130I | CCWGG | 1 cut(s) | 477 |
| BciVI | GTATCC | 2 cut(s) | 421, 482 |
| BcnI | CCSGG | 1 cut(s) | 401 |
| BcoDI | GTCTC | 1 cut(s) | 168 |
| BfaI | CTAG | 2 cut(s) | 189, 525 |
| BfmI | CTRYAG | 1 cut(s) | 231 |
| BfoI | RGCGCY | 2 cut(s) | 77, 88 |
| BfuI | GTATCC | 2 cut(s) | 421, 482 |
| BlnI | CCTAGG | 1 cut(s) | 524 |
| Bme1390I | CCNGG | 2 cut(s) | 401, 477 |
| BmiI | GGNNCC | 4 cut(s) | 347, 381, 493, 514 |
| BmrFI | CCNGG | 2 cut(s) | 401, 477 |
| BmsI | GCATC | 1 cut(s) | 43 |
| BpuMI | CCSGG | 1 cut(s) | 401 |
| Bsa29I | ATCGAT | 1 cut(s) | 586 |
| BsaAI | YACGTR | 1 cut(s) | 452 |
| BsaJI | CCNNGG | 5 cut(s) | 177, 475, 481, 495, 524 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 26, 56, 448, 478, 505, 535 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 330, 400, 453, 482, 526 |
| Bse3DI | GCAATG | 2 cut(s) | 100, 183 |
| BseBI | CCWGG | 1 cut(s) | 477 |
| BseCI | ATCGAT | 1 cut(s) | 586 |
| BseDI | CCNNGG | 5 cut(s) | 177, 475, 481, 495, 524 |
| BseGI | GGATG | 1 cut(s) | 320 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 330, 400, 453, 482, 526 |
| BseMI | GCAATG | 2 cut(s) | 100, 183 |
| BseMII | CTCAG | 2 cut(s) | 40, 228 |
| BseRI | GAGGAG | 1 cut(s) | 101 |
| BseSI | GKGCMC | 1 cut(s) | 547 |
| BshFI | GGCC | 1 cut(s) | 480 |
| BshNI | GGYRCC | 2 cut(s) | 491, 512 |
| BshVI | ATCGAT | 1 cut(s) | 586 |
| BsiHKAI | GWGCWC | 1 cut(s) | 547 |
| BsiSI | CCGG | 1 cut(s) | 400 |
| BslFI | GGGAC | 2 cut(s) | 375, 384 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 330, 400, 453, 482, 526 |
| BsmAI | GTCTC | 1 cut(s) | 168 |
| BsmFI | GGGAC | 2 cut(s) | 375, 384 |
| BsnI | GGCC | 1 cut(s) | 480 |
| Bsp1286I | GDGCHC | 1 cut(s) | 547 |
| Bsp143I | GATC | 2 cut(s) | 45, 379 |
| Bsp19I | CCATGG | 1 cut(s) | 495 |
| BspACI | CCGC | 2 cut(s) | 343, 412 |
| BspANI | GGCC | 1 cut(s) | 480 |
| BspCNI | CTCAG | 2 cut(s) | 39, 229 |
| BspDI | ATCGAT | 1 cut(s) | 586 |
| BspHI | TCATGA | 1 cut(s) | 301 |
| BspLI | GGNNCC | 4 cut(s) | 347, 381, 493, 514 |
| BspPI | GGATC | 2 cut(s) | 374, 387 |
| BspQI | GCTCTTC | 1 cut(s) | 75 |
| BspT107I | GGYRCC | 2 cut(s) | 491, 512 |
| BsrBI | CCGCTC | 1 cut(s) | 343 |
| BsrDI | GCAATG | 2 cut(s) | 100, 183 |
| BssECI | CCNNGG | 5 cut(s) | 177, 475, 481, 495, 524 |
| BssMI | GATC | 2 cut(s) | 45, 379 |
| BssT1I | CCWWGG | 2 cut(s) | 495, 524 |
| Bst2UI | CCWGG | 1 cut(s) | 477 |
| Bst4CI | ACNGT | 1 cut(s) | 127 |
| Bst6I | CTCTTC | 1 cut(s) | 75 |
| BstBAI | YACGTR | 1 cut(s) | 452 |
| BstDEI | CTNAG | 4 cut(s) | 26, 237, 291, 351 |
| BstDSI | CCRYGG | 2 cut(s) | 481, 495 |
| BstF5I | GGATG | 1 cut(s) | 320 |
| BstH2I | RGCGCY | 2 cut(s) | 77, 88 |
| BstHHI | GCGC | 4 cut(s) | 76, 87, 147, 336 |
| BstKTI | GATC | 2 cut(s) | 48, 382 |
| BstMAI | GTCTC | 1 cut(s) | 168 |
| BstMBI | GATC | 2 cut(s) | 45, 379 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 82, 340 |
| BstNI | CCWGG | 1 cut(s) | 477 |
| BstSCI | CCNGG | 2 cut(s) | 399, 475 |
| BstSFI | CTRYAG | 1 cut(s) | 231 |
| BstSLI | GKGCMC | 1 cut(s) | 547 |
| BstX2I | RGATCY | 1 cut(s) | 379 |
| BstYI | RGATCY | 1 cut(s) | 379 |
| Bsu15I | ATCGAT | 1 cut(s) | 586 |
| BsuI | GTATCC | 2 cut(s) | 421, 482 |
| BsuRI | GGCC | 1 cut(s) | 480 |
| BsuTUI | ATCGAT | 1 cut(s) | 586 |
| BtgI | CCRYGG | 2 cut(s) | 481, 495 |
| BtsCI | GGATG | 1 cut(s) | 320 |
| CciI | TCATGA | 1 cut(s) | 301 |
| CfoI | GCGC | 4 cut(s) | 76, 87, 147, 336 |
| ClaI | ATCGAT | 1 cut(s) | 586 |
| Csp6I | GTAC | 1 cut(s) | 174 |
| CviAII | CATG | 5 cut(s) | 245, 302, 365, 434, 496 |
| CviJI | RGCY | 4 cut(s) | 64, 214, 236, 480 |
| CviKI_1 | RGCY | 4 cut(s) | 64, 214, 236, 480 |
| CviQI | GTAC | 1 cut(s) | 174 |
| DdeI | CTNAG | 4 cut(s) | 26, 237, 291, 351 |
| DpnI | GATC | 2 cut(s) | 47, 381 |
| DpnII | GATC | 2 cut(s) | 45, 379 |
| DraIII | CACNNNGTG | 2 cut(s) | 437, 542 |
| EaeI | YGGCCR | 1 cut(s) | 478 |
| Eam1104I | CTCTTC | 1 cut(s) | 75 |
| EarI | CTCTTC | 1 cut(s) | 75 |
| Eco130I | CCWWGG | 2 cut(s) | 495, 524 |
| Eco47III | AGCGCT | 2 cut(s) | 75, 86 |
| Eco72I | CACGTG | 1 cut(s) | 452 |
| EcoRI | GAATTC | 1 cut(s) | 155 |
| EcoRII | CCWGG | 1 cut(s) | 475 |
| EcoT14I | CCWWGG | 2 cut(s) | 495, 524 |
| ErhI | CCWWGG | 2 cut(s) | 495, 524 |
| FaeI | CATG | 5 cut(s) | 248, 305, 368, 437, 499 |
| FaqI | GGGAC | 2 cut(s) | 375, 384 |
| FatI | CATG | 5 cut(s) | 244, 301, 364, 433, 495 |
| FauNDI | CATATG | 1 cut(s) | 12 |
| FokI | GGATG | 1 cut(s) | 307 |
| FspBI | CTAG | 2 cut(s) | 189, 525 |
| GlaI | GCGC | 4 cut(s) | 75, 86, 146, 335 |
| HaeII | RGCGCY | 2 cut(s) | 77, 88 |
| HaeIII | GGCC | 1 cut(s) | 480 |
| HapII | CCGG | 1 cut(s) | 400 |
| HhaI | GCGC | 4 cut(s) | 76, 87, 147, 336 |
| Hin1II | CATG | 5 cut(s) | 248, 305, 368, 437, 499 |
| Hin6I | GCGC | 4 cut(s) | 74, 85, 145, 334 |
| HinP1I | GCGC | 4 cut(s) | 74, 85, 145, 334 |
| HinfI | GANTC | 1 cut(s) | 104 |
| HpaII | CCGG | 1 cut(s) | 400 |
| HphI | GGTGA | 2 cut(s) | 434, 449 |
| Hpy166II | GTNNAC | 1 cut(s) | 545 |
| Hpy188I | TCNGA | 1 cut(s) | 29 |
| Hpy188III | TCNNGA | 2 cut(s) | 276, 302 |
| Hpy8I | GTNNAC | 1 cut(s) | 545 |
| HpyAV | CCTTC | 2 cut(s) | 398, 550 |
| HpyCH4III | ACNGT | 1 cut(s) | 127 |
| HpyCH4IV | ACGT | 3 cut(s) | 373, 451, 541 |
| HpyCH4V | TGCA | 2 cut(s) | 56, 545 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 82, 340 |
| HpyF3I | CTNAG | 4 cut(s) | 26, 237, 291, 351 |
| HpySE526I | ACGT | 3 cut(s) | 373, 451, 541 |
| Hsp92II | CATG | 5 cut(s) | 248, 305, 368, 437, 499 |
| HspAI | GCGC | 4 cut(s) | 74, 85, 145, 334 |
| Kzo9I | GATC | 2 cut(s) | 45, 379 |
| LguI | GCTCTTC | 1 cut(s) | 75 |
| LmnI | GCTCC | 1 cut(s) | 340 |
| LpnPI | CCDG | 5 cut(s) | 62, 129, 413, 462, 489 |
| LweI | GCATC | 1 cut(s) | 43 |
| MaeI | CTAG | 2 cut(s) | 189, 525 |
| MaeII | ACGT | 3 cut(s) | 373, 451, 541 |
| MalI | GATC | 2 cut(s) | 47, 381 |
| MbiI | CCGCTC | 1 cut(s) | 343 |
| MboI | GATC | 2 cut(s) | 45, 379 |
| MboII | GAAGA | 1 cut(s) | 92 |
| MfeI | CAATTG | 1 cut(s) | 551 |
| MflI | RGATCY | 1 cut(s) | 379 |
| MhlI | GDGCHC | 1 cut(s) | 547 |
| MluCI | AATT | 5 cut(s) | 155, 265, 271, 310, 551 |
| MseI | TTAA | 1 cut(s) | 122 |
| MslI | CAYNNNNRTG | 2 cut(s) | 257, 588 |
| MspI | CCGG | 1 cut(s) | 400 |
| MspR9I | CCNGG | 2 cut(s) | 401, 477 |
| MunI | CAATTG | 1 cut(s) | 551 |
| MvaI | CCWGG | 1 cut(s) | 477 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 82, 340 |
| NciI | CCSGG | 1 cut(s) | 401 |
| NcoI | CCATGG | 1 cut(s) | 495 |
| NdeI | CATATG | 1 cut(s) | 12 |
| NdeII | GATC | 2 cut(s) | 45, 379 |
| NlaIII | CATG | 5 cut(s) | 248, 305, 368, 437, 499 |
| NlaIV | GGNNCC | 4 cut(s) | 347, 381, 493, 514 |
| PagI | TCATGA | 1 cut(s) | 301 |
| PciSI | GCTCTTC | 1 cut(s) | 75 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 538 |
| PfeI | GAWTC | 1 cut(s) | 104 |
| PmaCI | CACGTG | 1 cut(s) | 452 |
| PmlI | CACGTG | 1 cut(s) | 452 |
| Ppu21I | YACGTR | 1 cut(s) | 452 |
| PsiI | TTATAA | 2 cut(s) | 270, 315 |
| Psp6I | CCWGG | 1 cut(s) | 475 |
| PspCI | CACGTG | 1 cut(s) | 452 |
| PspGI | CCWGG | 1 cut(s) | 475 |
| PspN4I | GGNNCC | 4 cut(s) | 347, 381, 493, 514 |
| PsuI | RGATCY | 1 cut(s) | 379 |
| RsaI | GTAC | 1 cut(s) | 175 |
| RsaNI | GTAC | 1 cut(s) | 174 |
| RseI | CAYNNNNRTG | 2 cut(s) | 257, 588 |
| SapI | GCTCTTC | 1 cut(s) | 75 |
| SaqAI | TTAA | 1 cut(s) | 122 |
| Sau3AI | GATC | 2 cut(s) | 45, 379 |
| ScrFI | CCNGG | 2 cut(s) | 401, 477 |
| SduI | GDGCHC | 1 cut(s) | 547 |
| SfaNI | GCATC | 1 cut(s) | 43 |
| SfcI | CTRYAG | 1 cut(s) | 231 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 257, 588 |
| Sse9I | AATT | 5 cut(s) | 155, 265, 271, 310, 551 |
| SsiI | CCGC | 2 cut(s) | 343, 412 |
| SspMI | CTAG | 2 cut(s) | 189, 525 |
| StyD4I | CCNGG | 2 cut(s) | 399, 475 |
| StyI | CCWWGG | 2 cut(s) | 495, 524 |
| TaaI | ACNGT | 1 cut(s) | 127 |
| TaiI | ACGT | 3 cut(s) | 376, 454, 544 |
| TaqI | TCGA | 2 cut(s) | 44, 586 |
| TasI | AATT | 5 cut(s) | 155, 265, 271, 310, 551 |
| TfiI | GAWTC | 1 cut(s) | 104 |
| Tru1I | TTAA | 1 cut(s) | 122 |
| Tru9I | TTAA | 1 cut(s) | 122 |
| TspDTI | ATGAA | 2 cut(s) | 197, 290 |
| VneI | GTGCAC | 1 cut(s) | 543 |
| XapI | RAATTY | 1 cut(s) | 155 |
| XmaJI | CCTAGG | 1 cut(s) | 524 |
| XspI | CTAG | 2 cut(s) | 189, 525 |