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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 494 |
| AccIII | TCCGGA | 1 cut(s) | 394 |
| AciI | CCGC | 1 cut(s) | 106 |
| AclWI | GGATC | 1 cut(s) | 366 |
| AcoI | YGGCCR | 1 cut(s) | 481 |
| AcsI | RAATTY | 1 cut(s) | 173 |
| AcyI | GRCGYC | 1 cut(s) | 495 |
| AgsI | TTSAA | 2 cut(s) | 121, 532 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 33, 65 |
| AluBI | AGCT | 4 cut(s) | 307, 317, 614, 665 |
| AluI | AGCT | 4 cut(s) | 307, 317, 614, 665 |
| Alw21I | GWGCWC | 2 cut(s) | 309, 616 |
| Alw26I | GTCTC | 2 cut(s) | 37, 241 |
| AlwI | GGATC | 1 cut(s) | 366 |
| Aor13HI | TCCGGA | 1 cut(s) | 394 |
| AoxI | GGCC | 1 cut(s) | 481 |
| ApoI | RAATTY | 1 cut(s) | 173 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 150 |
| AspLEI | GCGC | 1 cut(s) | 497 |
| BaeGI | GKGCMC | 1 cut(s) | 601 |
| BalI | TGGCCA | 1 cut(s) | 483 |
| BanI | GGYRCC | 1 cut(s) | 494 |
| BanII | GRGCYC | 2 cut(s) | 309, 616 |
| BauI | CACGAG | 1 cut(s) | 615 |
| BbsI | GAAGAC | 2 cut(s) | 18, 221 |
| Bbv12I | GWGCWC | 2 cut(s) | 309, 616 |
| BccI | CCATC | 2 cut(s) | 87, 241 |
| BclI | TGATCA | 1 cut(s) | 589 |
| BcoDI | GTCTC | 2 cut(s) | 37, 241 |
| BfaI | CTAG | 2 cut(s) | 83, 701 |
| BfoI | RGCGCY | 1 cut(s) | 498 |
| BmiI | GGNNCC | 2 cut(s) | 437, 496 |
| BmsI | GCATC | 2 cut(s) | 514, 523 |
| BpiI | GAAGAC | 2 cut(s) | 18, 221 |
| BsaHI | GRCGYC | 1 cut(s) | 495 |
| BsaI | GGTCTC | 1 cut(s) | 37 |
| BsaJI | CCNNGG | 1 cut(s) | 375 |
| BsaWI | WCCGGW | 1 cut(s) | 394 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 612, 642 |
| BseAI | TCCGGA | 1 cut(s) | 394 |
| BseDI | CCNNGG | 1 cut(s) | 375 |
| BseGI | GGATG | 1 cut(s) | 345 |
| BseMII | CTCAG | 1 cut(s) | 48 |
| BseSI | GKGCMC | 1 cut(s) | 601 |
| BshFI | GGCC | 1 cut(s) | 483 |
| BshNI | GGYRCC | 1 cut(s) | 494 |
| BsiHKAI | GWGCWC | 2 cut(s) | 309, 616 |
| BsiSI | CCGG | 1 cut(s) | 395 |
| BsmAI | GTCTC | 2 cut(s) | 37, 241 |
| BsnI | GGCC | 1 cut(s) | 483 |
| Bso31I | GGTCTC | 1 cut(s) | 37 |
| Bsp1286I | GDGCHC | 3 cut(s) | 309, 601, 616 |
| Bsp13I | TCCGGA | 1 cut(s) | 394 |
| Bsp143I | GATC | 5 cut(s) | 189, 371, 589, 685, 697 |
| BspACI | CCGC | 1 cut(s) | 106 |
| BspANI | GGCC | 1 cut(s) | 483 |
| BspCNI | CTCAG | 1 cut(s) | 47 |
| BspEI | TCCGGA | 1 cut(s) | 394 |
| BspHI | TCATGA | 1 cut(s) | 301 |
| BspLI | GGNNCC | 2 cut(s) | 437, 496 |
| BspPI | GGATC | 1 cut(s) | 366 |
| BspT107I | GGYRCC | 1 cut(s) | 494 |
| BspTNI | GGTCTC | 1 cut(s) | 37 |
| BssECI | CCNNGG | 1 cut(s) | 375 |
| BssMI | GATC | 5 cut(s) | 189, 371, 589, 685, 697 |
| BssNI | GRCGYC | 1 cut(s) | 495 |
| BssSI | CACGAG | 1 cut(s) | 615 |
| Bst2BI | CACGAG | 1 cut(s) | 615 |
| Bst6I | CTCTTC | 1 cut(s) | 436 |
| BstACI | GRCGYC | 1 cut(s) | 495 |
| BstDEI | CTNAG | 3 cut(s) | 34, 255, 507 |
| BstDSI | CCRYGG | 1 cut(s) | 375 |
| BstF5I | GGATG | 1 cut(s) | 345 |
| BstH2I | RGCGCY | 1 cut(s) | 498 |
| BstHHI | GCGC | 1 cut(s) | 497 |
| BstKTI | GATC | 5 cut(s) | 192, 374, 592, 688, 700 |
| BstMAI | GTCTC | 2 cut(s) | 37, 241 |
| BstMBI | GATC | 5 cut(s) | 189, 371, 589, 685, 697 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 533, 641, 662 |
| BstSLI | GKGCMC | 1 cut(s) | 601 |
| BstV2I | GAAGAC | 2 cut(s) | 18, 221 |
| BstX2I | RGATCY | 1 cut(s) | 371 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 491 |
| BstYI | RGATCY | 1 cut(s) | 371 |
| BsuRI | GGCC | 1 cut(s) | 483 |
| BtgI | CCRYGG | 1 cut(s) | 375 |
| BtgZI | GCGATG | 1 cut(s) | 215 |
| BtsCI | GGATG | 1 cut(s) | 345 |
| BtsI | GCAGTG | 2 cut(s) | 276, 630 |
| BtsIMutI | CAGTG | 2 cut(s) | 276, 630 |
| CciI | TCATGA | 1 cut(s) | 301 |
| CfoI | GCGC | 1 cut(s) | 497 |
| CviAII | CATG | 3 cut(s) | 302, 338, 485 |
| CviJI | RGCY | 7 cut(s) | 25, 102, 307, 317, 483, 614, 665 |
| CviKI_1 | RGCY | 7 cut(s) | 25, 102, 307, 317, 483, 614, 665 |
| DdeI | CTNAG | 3 cut(s) | 34, 255, 507 |
| DinI | GGCGCC | 1 cut(s) | 496 |
| DpnI | GATC | 5 cut(s) | 191, 373, 591, 687, 699 |
| DpnII | GATC | 5 cut(s) | 189, 371, 589, 685, 697 |
| EaeI | YGGCCR | 1 cut(s) | 481 |
| Eam1104I | CTCTTC | 1 cut(s) | 436 |
| EarI | CTCTTC | 1 cut(s) | 436 |
| Ecl136II | GAGCTC | 2 cut(s) | 307, 614 |
| Eco24I | GRGCYC | 2 cut(s) | 309, 616 |
| Eco31I | GGTCTC | 1 cut(s) | 37 |
| Eco53kI | GAGCTC | 2 cut(s) | 307, 614 |
| EcoICRI | GAGCTC | 2 cut(s) | 307, 614 |
| EcoT38I | GRGCYC | 2 cut(s) | 309, 616 |
| EgeI | GGCGCC | 1 cut(s) | 496 |
| EheI | GGCGCC | 1 cut(s) | 496 |
| FaeI | CATG | 3 cut(s) | 305, 341, 488 |
| FatI | CATG | 3 cut(s) | 301, 337, 484 |
| FbaI | TGATCA | 1 cut(s) | 589 |
| FokI | GGATG | 1 cut(s) | 332 |
| FriOI | GRGCYC | 2 cut(s) | 309, 616 |
| FspBI | CTAG | 2 cut(s) | 83, 701 |
| GlaI | GCGC | 1 cut(s) | 496 |
| HaeII | RGCGCY | 1 cut(s) | 498 |
| HaeIII | GGCC | 1 cut(s) | 483 |
| HapII | CCGG | 1 cut(s) | 395 |
| HhaI | GCGC | 1 cut(s) | 497 |
| Hin1I | GRCGYC | 1 cut(s) | 495 |
| Hin1II | CATG | 3 cut(s) | 305, 341, 488 |
| Hin6I | GCGC | 1 cut(s) | 495 |
| HinP1I | GCGC | 1 cut(s) | 495 |
| HinfI | GANTC | 3 cut(s) | 65, 217, 398 |
| HpaII | CCGG | 1 cut(s) | 395 |
| Hpy166II | GTNNAC | 1 cut(s) | 449 |
| Hpy188I | TCNGA | 2 cut(s) | 145, 589 |
| Hpy188III | TCNNGA | 8 cut(s) | 77, 131, 302, 369, 395, 573, 689, 701 |
| Hpy8I | GTNNAC | 1 cut(s) | 449 |
| HpyAV | CCTTC | 1 cut(s) | 15 |
| HpyCH4IV | ACGT | 2 cut(s) | 57, 451 |
| HpyCH4V | TGCA | 2 cut(s) | 242, 281 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 533, 641, 662 |
| HpyF3I | CTNAG | 3 cut(s) | 34, 255, 507 |
| HpySE526I | ACGT | 2 cut(s) | 57, 451 |
| Hsp92I | GRCGYC | 1 cut(s) | 495 |
| Hsp92II | CATG | 3 cut(s) | 305, 341, 488 |
| HspAI | GCGC | 1 cut(s) | 495 |
| KasI | GGCGCC | 1 cut(s) | 494 |
| Kpn2I | TCCGGA | 1 cut(s) | 394 |
| Ksp22I | TGATCA | 1 cut(s) | 589 |
| Kzo9I | GATC | 5 cut(s) | 189, 371, 589, 685, 697 |
| LmnI | GCTCC | 1 cut(s) | 314 |
| LpnPI | CCDG | 6 cut(s) | 31, 83, 90, 246, 408, 465 |
| LweI | GCATC | 2 cut(s) | 514, 523 |
| MaeI | CTAG | 2 cut(s) | 83, 701 |
| MaeII | ACGT | 2 cut(s) | 57, 451 |
| MaeIII | GTNAC | 3 cut(s) | 62, 274, 628 |
| MalI | GATC | 5 cut(s) | 191, 373, 591, 687, 699 |
| MboI | GATC | 5 cut(s) | 189, 371, 589, 685, 697 |
| MboII | GAAGA | 7 cut(s) | 23, 53, 226, 367, 453, 695, 704 |
| MflI | RGATCY | 1 cut(s) | 371 |
| MhlI | GDGCHC | 3 cut(s) | 309, 601, 616 |
| MlsI | TGGCCA | 1 cut(s) | 483 |
| MluCI | AATT | 5 cut(s) | 173, 288, 364, 403, 624 |
| MluNI | TGGCCA | 1 cut(s) | 483 |
| Mly113I | GGCGCC | 1 cut(s) | 495 |
| MlyI | GAGTC | 2 cut(s) | 59, 211 |
| MnlI | CCTC | 6 cut(s) | 113, 437, 457, 461, 487, 504 |
| Mox20I | TGGCCA | 1 cut(s) | 483 |
| MroI | TCCGGA | 1 cut(s) | 394 |
| MroXI | GAANNNNTTC | 1 cut(s) | 150 |
| MscI | TGGCCA | 1 cut(s) | 483 |
| MseI | TTAA | 2 cut(s) | 159, 167 |
| MslI | CAYNNNNRTG | 3 cut(s) | 350, 489, 519 |
| Msp20I | TGGCCA | 1 cut(s) | 483 |
| MspI | CCGG | 1 cut(s) | 395 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 533, 641, 662 |
| NarI | GGCGCC | 1 cut(s) | 495 |
| NdeII | GATC | 5 cut(s) | 189, 371, 589, 685, 697 |
| NlaIII | CATG | 3 cut(s) | 305, 341, 488 |
| NlaIV | GGNNCC | 2 cut(s) | 437, 496 |
| NmuCI | GTSAC | 3 cut(s) | 62, 274, 628 |
| PagI | TCATGA | 1 cut(s) | 301 |
| PdmI | GAANNNNTTC | 1 cut(s) | 150 |
| PfeI | GAWTC | 1 cut(s) | 398 |
| PleI | GAGTC | 2 cut(s) | 59, 211 |
| PluTI | GGCGCC | 1 cut(s) | 498 |
| PpsI | GAGTC | 2 cut(s) | 59, 211 |
| Psp124BI | GAGCTC | 2 cut(s) | 309, 616 |
| PspN4I | GGNNCC | 2 cut(s) | 437, 496 |
| PsuI | RGATCY | 1 cut(s) | 371 |
| RseI | CAYNNNNRTG | 3 cut(s) | 350, 489, 519 |
| SacI | GAGCTC | 2 cut(s) | 309, 616 |
| SaqAI | TTAA | 2 cut(s) | 159, 167 |
| Sau3AI | GATC | 5 cut(s) | 189, 371, 589, 685, 697 |
| SchI | GAGTC | 2 cut(s) | 59, 211 |
| SduI | GDGCHC | 3 cut(s) | 309, 601, 616 |
| SetI | ASST | 9 cut(s) | 60, 84, 299, 309, 319, 448, 454, 616, 667 |
| SfaNI | GCATC | 2 cut(s) | 514, 523 |
| SfoI | GGCGCC | 1 cut(s) | 496 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 350, 489, 519 |
| Sse9I | AATT | 5 cut(s) | 173, 288, 364, 403, 624 |
| SsiI | CCGC | 1 cut(s) | 106 |
| SspDI | GGCGCC | 1 cut(s) | 494 |
| SspMI | CTAG | 2 cut(s) | 83, 701 |
| SstI | GAGCTC | 2 cut(s) | 309, 616 |
| TaiI | ACGT | 2 cut(s) | 60, 454 |
| TaqI | TCGA | 3 cut(s) | 39, 368, 574 |
| TasI | AATT | 5 cut(s) | 173, 288, 364, 403, 624 |
| TfiI | GAWTC | 1 cut(s) | 398 |
| Tru1I | TTAA | 2 cut(s) | 159, 167 |
| Tru9I | TTAA | 2 cut(s) | 159, 167 |
| TscAI | CASTG | 2 cut(s) | 283, 637 |
| TseFI | GTSAC | 3 cut(s) | 62, 274, 628 |
| Tsp45I | GTSAC | 3 cut(s) | 62, 274, 628 |
| TspDTI | ATGAA | 3 cut(s) | 17, 290, 335 |
| TspGWI | ACGGA | 3 cut(s) | 50, 364, 448 |
| TspRI | CASTG | 2 cut(s) | 283, 637 |
| XapI | RAATTY | 1 cut(s) | 173 |
| XbaI | TCTAGA | 1 cut(s) | 700 |
| XmnI | GAANNNNTTC | 1 cut(s) | 150 |
| XspI | CTAG | 2 cut(s) | 83, 701 |