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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 447 |
| AccB1I | GGYRCC | 1 cut(s) | 6 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 710 |
| AciI | CCGC | 4 cut(s) | 4, 544, 557, 768 |
| AclWI | GGATC | 1 cut(s) | 778 |
| AcvI | CACGTG | 4 cut(s) | 566, 584, 599, 617 |
| AcyI | GRCGYC | 1 cut(s) | 7 |
| AdeI | CACNNNGTG | 4 cut(s) | 569, 587, 602, 710 |
| AfaI | GTAC | 3 cut(s) | 38, 508, 808 |
| AfeI | AGCGCT | 1 cut(s) | 75 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 210, 461, 462, 618, 694, 710, 734 |
| AflIII | ACRYGT | 5 cut(s) | 39, 563, 581, 596, 614 |
| AgsI | TTSAA | 3 cut(s) | 408, 790, 916 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 160 |
| AjiI | CACGTC | 1 cut(s) | 671 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 72, 104 |
| AluBI | AGCT | 7 cut(s) | 188, 244, 346, 368, 818, 825, 920 |
| AluI | AGCT | 7 cut(s) | 188, 244, 346, 368, 818, 825, 920 |
| Alw21I | GWGCWC | 1 cut(s) | 933 |
| Alw26I | GTCTC | 3 cut(s) | 54, 280, 431 |
| Alw44I | GTGCAC | 1 cut(s) | 929 |
| AlwI | GGATC | 1 cut(s) | 778 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 368 |
| Aor51HI | AGCGCT | 1 cut(s) | 75 |
| AoxI | GGCC | 3 cut(s) | 410, 511, 646 |
| ApaI | GGGCCC | 1 cut(s) | 515 |
| ApaLI | GTGCAC | 1 cut(s) | 929 |
| ApeKI | GCWGC | 2 cut(s) | 472, 818 |
| AseI | ATTAAT | 1 cut(s) | 351 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 189 |
| AspA2I | CCTAGG | 1 cut(s) | 692 |
| AspLEI | GCGC | 3 cut(s) | 9, 76, 468 |
| AspS9I | GGNCC | 4 cut(s) | 411, 511, 512, 646 |
| AsuHPI | GGTGA | 1 cut(s) | 892 |
| AvrII | CCTAGG | 1 cut(s) | 692 |
| BaeGI | GKGCMC | 2 cut(s) | 515, 933 |
| BanI | GGYRCC | 1 cut(s) | 6 |
| BanII | GRGCYC | 1 cut(s) | 515 |
| BauI | CACGAG | 1 cut(s) | 932 |
| BbrPI | CACGTG | 4 cut(s) | 566, 584, 599, 617 |
| BbsI | GAAGAC | 2 cut(s) | 260, 915 |
| Bbv12I | GWGCWC | 1 cut(s) | 933 |
| BbvI | GCAGC | 2 cut(s) | 484, 805 |
| BccI | CCATC | 1 cut(s) | 118 |
| BceAI | ACGGC | 1 cut(s) | 633 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 299, 333 |
| BciVI | GTATCC | 1 cut(s) | 623 |
| BcoDI | GTCTC | 3 cut(s) | 54, 280, 431 |
| BfaI | CTAG | 4 cut(s) | 57, 77, 693, 815 |
| BfoI | RGCGCY | 2 cut(s) | 10, 77 |
| BfuI | GTATCC | 1 cut(s) | 623 |
| BisI | GCNGC | 3 cut(s) | 5, 473, 819 |
| BlnI | CCTAGG | 1 cut(s) | 692 |
| BlsI | GCNGC | 3 cut(s) | 6, 474, 820 |
| BmcAI | AGTACT | 1 cut(s) | 808 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 160 |
| BmgBI | CACGTC | 1 cut(s) | 671 |
| BmgT120I | GGNCC | 4 cut(s) | 411, 511, 512, 646 |
| BmiI | GGNNCC | 3 cut(s) | 8, 421, 513 |
| BmsI | GCATC | 3 cut(s) | 43, 669, 928 |
| BoxI | GACNNNNGTC | 1 cut(s) | 756 |
| BpiI | GAAGAC | 2 cut(s) | 260, 915 |
| BsaAI | YACGTR | 4 cut(s) | 566, 584, 599, 617 |
| BsaBI | GATNNNNATC | 1 cut(s) | 894 |
| BsaHI | GRCGYC | 1 cut(s) | 7 |
| BsaI | GGTCTC | 1 cut(s) | 54 |
| BsaJI | CCNNGG | 2 cut(s) | 649, 692 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 709, 739 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 210, 461, 462, 618, 694, 710, 734 |
| Bse3DI | GCAATG | 2 cut(s) | 800, 805 |
| Bse8I | GATNNNNATC | 1 cut(s) | 894 |
| BseDI | CCNNGG | 2 cut(s) | 649, 692 |
| BseGI | GGATG | 2 cut(s) | 384, 943 |
| BseJI | GATNNNNATC | 1 cut(s) | 894 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 210, 461, 462, 618, 694, 710, 734 |
| BseMI | GCAATG | 2 cut(s) | 800, 805 |
| BseMII | CTCAG | 2 cut(s) | 40, 291 |
| BseRI | GAGGAG | 2 cut(s) | 101, 254 |
| BseSI | GKGCMC | 2 cut(s) | 515, 933 |
| BseXI | GCAGC | 2 cut(s) | 484, 805 |
| BsgI | GTGCAG | 1 cut(s) | 705 |
| BshFI | GGCC | 3 cut(s) | 412, 513, 648 |
| BshNI | GGYRCC | 1 cut(s) | 6 |
| BsiHKAI | GWGCWC | 1 cut(s) | 933 |
| BsiWI | CGTACG | 1 cut(s) | 506 |
| BslFI | GGGAC | 1 cut(s) | 507 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 210, 461, 462, 618, 694, 710, 734 |
| BsmAI | GTCTC | 3 cut(s) | 54, 280, 431 |
| BsmBI | CGTCTC | 1 cut(s) | 280 |
| BsmFI | GGGAC | 1 cut(s) | 507 |
| BsnI | GGCC | 3 cut(s) | 412, 513, 648 |
| Bso31I | GGTCTC | 1 cut(s) | 54 |
| Bsp120I | GGGCCC | 1 cut(s) | 511 |
| Bsp1286I | GDGCHC | 2 cut(s) | 515, 933 |
| Bsp143I | GATC | 1 cut(s) | 770 |
| BspACI | CCGC | 4 cut(s) | 4, 544, 557, 768 |
| BspANI | GGCC | 3 cut(s) | 412, 513, 648 |
| BspCNI | CTCAG | 2 cut(s) | 39, 290 |
| BspLI | GGNNCC | 3 cut(s) | 8, 421, 513 |
| BspPI | GGATC | 1 cut(s) | 778 |
| BspQI | GCTCTTC | 2 cut(s) | 75, 195 |
| BspT107I | GGYRCC | 1 cut(s) | 6 |
| BspTNI | GGTCTC | 1 cut(s) | 54 |
| BsrDI | GCAATG | 2 cut(s) | 800, 805 |
| BssECI | CCNNGG | 2 cut(s) | 649, 692 |
| BssMI | GATC | 1 cut(s) | 770 |
| BssNI | GRCGYC | 1 cut(s) | 7 |
| BssSI | CACGAG | 1 cut(s) | 932 |
| BssT1I | CCWWGG | 1 cut(s) | 692 |
| Bst2BI | CACGAG | 1 cut(s) | 932 |
| Bst6I | CTCTTC | 4 cut(s) | 75, 195, 231, 873 |
| BstACI | GRCGYC | 1 cut(s) | 7 |
| BstBAI | YACGTR | 4 cut(s) | 566, 584, 599, 617 |
| BstC8I | GCNNGC | 2 cut(s) | 470, 823 |
| BstDEI | CTNAG | 2 cut(s) | 26, 277 |
| BstDSI | CCRYGG | 1 cut(s) | 649 |
| BstF5I | GGATG | 2 cut(s) | 384, 943 |
| BstH2I | RGCGCY | 2 cut(s) | 10, 77 |
| BstHHI | GCGC | 3 cut(s) | 9, 76, 468 |
| BstKTI | GATC | 1 cut(s) | 773 |
| BstMAI | GTCTC | 3 cut(s) | 54, 280, 431 |
| BstMBI | GATC | 1 cut(s) | 770 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 82, 472, 866 |
| BstNSI | RCATGY | 1 cut(s) | 43 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 756 |
| BstSLI | GKGCMC | 2 cut(s) | 515, 933 |
| BstV1I | GCAGC | 2 cut(s) | 484, 805 |
| BstV2I | GAAGAC | 2 cut(s) | 260, 915 |
| BsuI | GTATCC | 1 cut(s) | 623 |
| BsuRI | GGCC | 3 cut(s) | 412, 513, 648 |
| BtgI | CCRYGG | 1 cut(s) | 649 |
| BtrI | CACGTC | 1 cut(s) | 671 |
| BtsCI | GGATG | 2 cut(s) | 384, 943 |
| BtsIMutI | CAGTG | 1 cut(s) | 137 |
| Cac8I | GCNNGC | 2 cut(s) | 470, 823 |
| CaiI | CAGNNNCTG | 1 cut(s) | 368 |
| CfoI | GCGC | 3 cut(s) | 9, 76, 468 |
| Cfr13I | GGNCC | 4 cut(s) | 411, 511, 512, 646 |
| CseI | GACGC | 1 cut(s) | 418 |
| Csp6I | GTAC | 3 cut(s) | 37, 507, 807 |
| CviAII | CATG | 3 cut(s) | 40, 205, 497 |
| CviQI | GTAC | 3 cut(s) | 37, 507, 807 |
| DdeI | CTNAG | 2 cut(s) | 26, 277 |
| DinI | GGCGCC | 1 cut(s) | 8 |
| DpnI | GATC | 1 cut(s) | 772 |
| DpnII | GATC | 1 cut(s) | 770 |
| DraI | TTTAAA | 1 cut(s) | 553 |
| DraIII | CACNNNGTG | 4 cut(s) | 569, 587, 602, 710 |
| DriI | GACNNNNNGTC | 1 cut(s) | 160 |
| Eam1104I | CTCTTC | 4 cut(s) | 75, 195, 231, 873 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 160 |
| EarI | CTCTTC | 4 cut(s) | 75, 195, 231, 873 |
| Eco130I | CCWWGG | 1 cut(s) | 692 |
| Eco24I | GRGCYC | 1 cut(s) | 515 |
| Eco31I | GGTCTC | 1 cut(s) | 54 |
| Eco32I | GATATC | 1 cut(s) | 291 |
| Eco47III | AGCGCT | 1 cut(s) | 75 |
| Eco72I | CACGTG | 4 cut(s) | 566, 584, 599, 617 |
| EcoRV | GATATC | 1 cut(s) | 291 |
| EcoT14I | CCWWGG | 1 cut(s) | 692 |
| EcoT38I | GRGCYC | 1 cut(s) | 515 |
| EgeI | GGCGCC | 1 cut(s) | 8 |
| EheI | GGCGCC | 1 cut(s) | 8 |
| ErhI | CCWWGG | 1 cut(s) | 692 |
| Esp3I | CGTCTC | 1 cut(s) | 280 |
| FaeI | CATG | 3 cut(s) | 43, 208, 500 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 849, 881 |
| FaqI | GGGAC | 1 cut(s) | 507 |
| FatI | CATG | 3 cut(s) | 39, 204, 496 |
| FauNDI | CATATG | 1 cut(s) | 12 |
| Fnu4HI | GCNGC | 3 cut(s) | 5, 473, 819 |
| FokI | GGATG | 2 cut(s) | 371, 950 |
| FriOI | GRGCYC | 1 cut(s) | 515 |
| Fsp4HI | GCNGC | 3 cut(s) | 5, 473, 819 |
| FspBI | CTAG | 4 cut(s) | 57, 77, 693, 815 |
| GlaI | GCGC | 3 cut(s) | 8, 75, 467 |
| GluI | GCNGC | 3 cut(s) | 5, 473, 819 |
| HaeII | RGCGCY | 2 cut(s) | 10, 77 |
| HaeIII | GGCC | 3 cut(s) | 412, 513, 648 |
| HgaI | GACGC | 1 cut(s) | 418 |
| HhaI | GCGC | 3 cut(s) | 9, 76, 468 |
| Hin1I | GRCGYC | 1 cut(s) | 7 |
| Hin1II | CATG | 3 cut(s) | 43, 208, 500 |
| Hin6I | GCGC | 3 cut(s) | 7, 74, 466 |
| HinP1I | GCGC | 3 cut(s) | 7, 74, 466 |
| HinfI | GANTC | 1 cut(s) | 256 |
| HphI | GGTGA | 1 cut(s) | 892 |
| Hpy166II | GTNNAC | 2 cut(s) | 713, 931 |
| Hpy188I | TCNGA | 3 cut(s) | 29, 154, 184 |
| Hpy8I | GTNNAC | 2 cut(s) | 713, 931 |
| HpyCH4IV | ACGT | 7 cut(s) | 565, 583, 598, 616, 670, 709, 753 |
| HpyCH4V | TGCA | 8 cut(s) | 221, 452, 722, 798, 803, 821, 931, 941 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 82, 472, 866 |
| HpyF3I | CTNAG | 2 cut(s) | 26, 277 |
| HpySE526I | ACGT | 7 cut(s) | 565, 583, 598, 616, 670, 709, 753 |
| Hsp92I | GRCGYC | 1 cut(s) | 7 |
| Hsp92II | CATG | 3 cut(s) | 43, 208, 500 |
| HspAI | GCGC | 3 cut(s) | 7, 74, 466 |
| KasI | GGCGCC | 1 cut(s) | 6 |
| Kzo9I | GATC | 1 cut(s) | 770 |
| LguI | GCTCTTC | 2 cut(s) | 75, 195 |
| LmnI | GCTCC | 2 cut(s) | 241, 850 |
| LpnPI | CCDG | 4 cut(s) | 129, 306, 475, 832 |
| Lsp1109I | GCAGC | 2 cut(s) | 484, 805 |
| LweI | GCATC | 3 cut(s) | 43, 669, 928 |
| MaeI | CTAG | 4 cut(s) | 57, 77, 693, 815 |
| MaeII | ACGT | 7 cut(s) | 565, 583, 598, 616, 670, 709, 753 |
| MaeIII | GTNAC | 2 cut(s) | 572, 683 |
| MalI | GATC | 1 cut(s) | 772 |
| MboI | GATC | 1 cut(s) | 770 |
| MboII | GAAGA | 8 cut(s) | 92, 182, 248, 265, 884, 890, 899, 920 |
| MfeI | CAATTG | 1 cut(s) | 282 |
| MhlI | GDGCHC | 2 cut(s) | 515, 933 |
| MluCI | AATT | 6 cut(s) | 246, 282, 327, 397, 442, 842 |
| Mly113I | GGCGCC | 1 cut(s) | 7 |
| MlyI | GAGTC | 1 cut(s) | 250 |
| MmeI | TCCRAC | 1 cut(s) | 177 |
| MroXI | GAANNNNTTC | 1 cut(s) | 189 |
| MseI | TTAA | 4 cut(s) | 159, 339, 351, 552 |
| MslI | CAYNNNNRTG | 1 cut(s) | 936 |
| MunI | CAATTG | 1 cut(s) | 282 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 82, 472, 866 |
| NarI | GGCGCC | 1 cut(s) | 7 |
| NdeI | CATATG | 1 cut(s) | 12 |
| NdeII | GATC | 1 cut(s) | 770 |
| NlaIII | CATG | 3 cut(s) | 43, 208, 500 |
| NlaIV | GGNNCC | 3 cut(s) | 8, 421, 513 |
| NspI | RCATGY | 1 cut(s) | 43 |
| PciI | ACATGT | 1 cut(s) | 39 |
| PciSI | GCTCTTC | 2 cut(s) | 75, 195 |
| PdmI | GAANNNNTTC | 1 cut(s) | 189 |
| Pfl23II | CGTACG | 1 cut(s) | 506 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 710 |
| PkrI | GCNGC | 3 cut(s) | 6, 474, 820 |
| PleI | GAGTC | 1 cut(s) | 250 |
| PluTI | GGCGCC | 1 cut(s) | 10 |
| PmaCI | CACGTG | 4 cut(s) | 566, 584, 599, 617 |
| PmlI | CACGTG | 4 cut(s) | 566, 584, 599, 617 |
| PpsI | GAGTC | 1 cut(s) | 250 |
| Ppu21I | YACGTR | 4 cut(s) | 566, 584, 599, 617 |
| PscI | ACATGT | 1 cut(s) | 39 |
| PshAI | GACNNNNGTC | 1 cut(s) | 756 |
| PshBI | ATTAAT | 1 cut(s) | 351 |
| PsiI | TTATAA | 1 cut(s) | 447 |
| PspCI | CACGTG | 4 cut(s) | 566, 584, 599, 617 |
| PspLI | CGTACG | 1 cut(s) | 506 |
| PspN4I | GGNNCC | 3 cut(s) | 8, 421, 513 |
| PspOMI | GGGCCC | 1 cut(s) | 511 |
| PspPI | GGNCC | 4 cut(s) | 411, 511, 512, 646 |
| PstNI | CAGNNNCTG | 1 cut(s) | 368 |
| RsaI | GTAC | 3 cut(s) | 38, 508, 808 |
| RsaNI | GTAC | 3 cut(s) | 37, 507, 807 |
| RseI | CAYNNNNRTG | 1 cut(s) | 936 |
| SapI | GCTCTTC | 2 cut(s) | 75, 195 |
| SaqAI | TTAA | 4 cut(s) | 159, 339, 351, 552 |
| SatI | GCNGC | 3 cut(s) | 5, 473, 819 |
| Sau3AI | GATC | 1 cut(s) | 770 |
| Sau96I | GGNCC | 4 cut(s) | 411, 511, 512, 646 |
| ScaI | AGTACT | 1 cut(s) | 808 |
| SchI | GAGTC | 1 cut(s) | 250 |
| SduI | GDGCHC | 2 cut(s) | 515, 933 |
| SfaNI | GCATC | 3 cut(s) | 43, 669, 928 |
| SfoI | GGCGCC | 1 cut(s) | 8 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 936 |
| Sse9I | AATT | 6 cut(s) | 246, 282, 327, 397, 442, 842 |
| SsiI | CCGC | 4 cut(s) | 4, 544, 557, 768 |
| SspDI | GGCGCC | 1 cut(s) | 6 |
| SspMI | CTAG | 4 cut(s) | 57, 77, 693, 815 |
| StyI | CCWWGG | 1 cut(s) | 692 |
| TaiI | ACGT | 7 cut(s) | 568, 586, 601, 619, 673, 712, 756 |
| TaqI | TCGA | 1 cut(s) | 777 |
| TasI | AATT | 6 cut(s) | 246, 282, 327, 397, 442, 842 |
| TatI | WGTACW | 2 cut(s) | 36, 806 |
| TauI | GCSGC | 1 cut(s) | 7 |
| Tru1I | TTAA | 4 cut(s) | 159, 339, 351, 552 |
| Tru9I | TTAA | 4 cut(s) | 159, 339, 351, 552 |
| TscAI | CASTG | 1 cut(s) | 137 |
| TseI | GCWGC | 2 cut(s) | 472, 818 |
| TspDTI | ATGAA | 3 cut(s) | 513, 746, 891 |
| TspGWI | ACGGA | 1 cut(s) | 422 |
| TspRI | CASTG | 1 cut(s) | 137 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 710 |
| VneI | GTGCAC | 1 cut(s) | 929 |
| VspI | ATTAAT | 1 cut(s) | 351 |
| XceI | RCATGY | 1 cut(s) | 43 |
| XmaJI | CCTAGG | 1 cut(s) | 692 |
| XmnI | GAANNNNTTC | 1 cut(s) | 189 |
| XspI | CTAG | 4 cut(s) | 57, 77, 693, 815 |
| ZrmI | AGTACT | 1 cut(s) | 808 |