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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 559 |
| AciI | CCGC | 2 cut(s) | 79, 271 |
| AclWI | GGATC | 2 cut(s) | 461, 531 |
| AcsI | RAATTY | 1 cut(s) | 338 |
| AfaI | GTAC | 1 cut(s) | 248 |
| AgsI | TTSAA | 2 cut(s) | 286, 467 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjnI | CCWGG | 1 cut(s) | 129 |
| AluBI | AGCT | 3 cut(s) | 155, 472, 482 |
| AluI | AGCT | 3 cut(s) | 155, 472, 482 |
| Alw21I | GWGCWC | 1 cut(s) | 474 |
| Alw26I | GTCTC | 2 cut(s) | 116, 406 |
| AlwI | GGATC | 2 cut(s) | 461, 531 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| Aor13HI | TCCGGA | 1 cut(s) | 559 |
| AoxI | GGCC | 1 cut(s) | 93 |
| ApeKI | GCWGC | 1 cut(s) | 179 |
| ApoI | RAATTY | 1 cut(s) | 338 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 315 |
| AsuHPI | GGTGA | 1 cut(s) | 211 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| BanII | GRGCYC | 1 cut(s) | 474 |
| BbsI | GAAGAC | 1 cut(s) | 386 |
| Bbv12I | GWGCWC | 1 cut(s) | 474 |
| BbvI | GCAGC | 1 cut(s) | 191 |
| BccI | CCATC | 5 cut(s) | 92, 215, 252, 394, 406 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 425, 459 |
| BciT130I | CCWGG | 1 cut(s) | 131 |
| BciVI | GTATCC | 1 cut(s) | 103 |
| BcoDI | GTCTC | 2 cut(s) | 116, 406 |
| BfaI | CTAG | 1 cut(s) | 126 |
| BfuI | GTATCC | 1 cut(s) | 103 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 1 cut(s) | 180 |
| BlsI | GCNGC | 1 cut(s) | 181 |
| Bme1390I | CCNGG | 1 cut(s) | 131 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmrFI | CCNGG | 1 cut(s) | 131 |
| BmsI | GCATC | 1 cut(s) | 94 |
| BpiI | GAAGAC | 1 cut(s) | 386 |
| BpmI | CTGGAG | 1 cut(s) | 227 |
| Bpu10I | CCTNAGC | 2 cut(s) | 11, 156 |
| BpuEI | CTTGAG | 1 cut(s) | 74 |
| Bsa29I | ATCGAT | 1 cut(s) | 435 |
| BsaJI | CCNNGG | 1 cut(s) | 540 |
| BsaWI | WCCGGW | 1 cut(s) | 559 |
| Bse1I | ACTGG | 2 cut(s) | 49, 244 |
| BseAI | TCCGGA | 1 cut(s) | 559 |
| BseBI | CCWGG | 1 cut(s) | 131 |
| BseCI | ATCGAT | 1 cut(s) | 435 |
| BseDI | CCNNGG | 1 cut(s) | 540 |
| BseGI | GGATG | 2 cut(s) | 210, 238 |
| BseMII | CTCAG | 1 cut(s) | 170 |
| BseNI | ACTGG | 2 cut(s) | 49, 244 |
| BseXI | GCAGC | 1 cut(s) | 191 |
| BsgI | GTGCAG | 1 cut(s) | 198 |
| BshFI | GGCC | 1 cut(s) | 95 |
| BshVI | ATCGAT | 1 cut(s) | 435 |
| BsiHKAI | GWGCWC | 1 cut(s) | 474 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BsiSI | CCGG | 1 cut(s) | 560 |
| BsmAI | GTCTC | 2 cut(s) | 116, 406 |
| BsmBI | CGTCTC | 1 cut(s) | 406 |
| BsnI | GGCC | 1 cut(s) | 95 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| Bsp1286I | GDGCHC | 1 cut(s) | 474 |
| Bsp13I | TCCGGA | 1 cut(s) | 559 |
| Bsp143I | GATC | 3 cut(s) | 354, 453, 536 |
| BspACI | CCGC | 2 cut(s) | 79, 271 |
| BspANI | GGCC | 1 cut(s) | 95 |
| BspCNI | CTCAG | 1 cut(s) | 169 |
| BspDI | ATCGAT | 1 cut(s) | 435 |
| BspEI | TCCGGA | 1 cut(s) | 559 |
| BspPI | GGATC | 2 cut(s) | 461, 531 |
| BsrI | ACTGG | 2 cut(s) | 49, 244 |
| BssECI | CCNNGG | 1 cut(s) | 540 |
| BssMI | GATC | 3 cut(s) | 354, 453, 536 |
| Bst2UI | CCWGG | 1 cut(s) | 131 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 176 |
| BstC8I | GCNNGC | 2 cut(s) | 83, 153 |
| BstDEI | CTNAG | 4 cut(s) | 11, 156, 184, 420 |
| BstDSI | CCRYGG | 1 cut(s) | 540 |
| BstF5I | GGATG | 2 cut(s) | 210, 238 |
| BstKTI | GATC | 3 cut(s) | 357, 456, 539 |
| BstMAI | GTCTC | 2 cut(s) | 116, 406 |
| BstMBI | GATC | 3 cut(s) | 354, 453, 536 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 167, 176, 188 |
| BstNI | CCWGG | 1 cut(s) | 131 |
| BstSCI | CCNGG | 1 cut(s) | 129 |
| BstV1I | GCAGC | 1 cut(s) | 191 |
| BstV2I | GAAGAC | 1 cut(s) | 386 |
| BstX2I | RGATCY | 1 cut(s) | 536 |
| BstYI | RGATCY | 1 cut(s) | 536 |
| Bsu15I | ATCGAT | 1 cut(s) | 435 |
| BsuI | GTATCC | 1 cut(s) | 103 |
| BsuRI | GGCC | 1 cut(s) | 95 |
| BsuTUI | ATCGAT | 1 cut(s) | 435 |
| BtgI | CCRYGG | 1 cut(s) | 540 |
| BtgZI | GCGATG | 1 cut(s) | 380 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 2 cut(s) | 210, 238 |
| Cac8I | GCNNGC | 2 cut(s) | 83, 153 |
| ClaI | ATCGAT | 1 cut(s) | 435 |
| Csp6I | GTAC | 1 cut(s) | 247 |
| CviAII | CATG | 1 cut(s) | 503 |
| CviQI | GTAC | 1 cut(s) | 247 |
| DdeI | CTNAG | 4 cut(s) | 11, 156, 184, 420 |
| DpnI | GATC | 3 cut(s) | 356, 455, 538 |
| DpnII | GATC | 3 cut(s) | 354, 453, 536 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Ecl136II | GAGCTC | 1 cut(s) | 472 |
| Eco24I | GRGCYC | 1 cut(s) | 474 |
| Eco32I | GATATC | 1 cut(s) | 76 |
| Eco53kI | GAGCTC | 1 cut(s) | 472 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| EcoICRI | GAGCTC | 1 cut(s) | 472 |
| EcoRI | GAATTC | 1 cut(s) | 338 |
| EcoRII | CCWGG | 1 cut(s) | 129 |
| EcoRV | GATATC | 1 cut(s) | 76 |
| EcoT38I | GRGCYC | 1 cut(s) | 474 |
| Esp3I | CGTCTC | 1 cut(s) | 406 |
| FaeI | CATG | 1 cut(s) | 506 |
| FatI | CATG | 1 cut(s) | 502 |
| FauNDI | CATATG | 2 cut(s) | 228, 361 |
| Fnu4HI | GCNGC | 1 cut(s) | 180 |
| FokI | GGATG | 2 cut(s) | 197, 245 |
| FriOI | GRGCYC | 1 cut(s) | 474 |
| Fsp4HI | GCNGC | 1 cut(s) | 180 |
| FspBI | CTAG | 1 cut(s) | 126 |
| GluI | GCNGC | 1 cut(s) | 180 |
| GsuI | CTGGAG | 1 cut(s) | 227 |
| HaeIII | GGCC | 1 cut(s) | 95 |
| HapII | CCGG | 1 cut(s) | 560 |
| Hin1II | CATG | 1 cut(s) | 506 |
| HinfI | GANTC | 6 cut(s) | 102, 115, 220, 382, 432, 563 |
| HpaII | CCGG | 1 cut(s) | 560 |
| HphI | GGTGA | 1 cut(s) | 211 |
| Hpy188I | TCNGA | 2 cut(s) | 52, 310 |
| Hpy188III | TCNNGA | 7 cut(s) | 71, 119, 121, 296, 467, 534, 560 |
| HpyAV | CCTTC | 1 cut(s) | 403 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4IV | ACGT | 1 cut(s) | 135 |
| HpyCH4V | TGCA | 3 cut(s) | 179, 407, 446 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 167, 176, 188 |
| HpyF3I | CTNAG | 4 cut(s) | 11, 156, 184, 420 |
| HpySE526I | ACGT | 1 cut(s) | 135 |
| Hsp92II | CATG | 1 cut(s) | 506 |
| Kpn2I | TCCGGA | 1 cut(s) | 559 |
| Kzo9I | GATC | 3 cut(s) | 354, 453, 536 |
| LmnI | GCTCC | 3 cut(s) | 34, 246, 479 |
| LpnPI | CCDG | 8 cut(s) | 23, 30, 95, 116, 143, 143, 257, 573 |
| Lsp1109I | GCAGC | 1 cut(s) | 191 |
| LweI | GCATC | 1 cut(s) | 94 |
| MaeI | CTAG | 1 cut(s) | 126 |
| MaeII | ACGT | 1 cut(s) | 135 |
| MaeIII | GTNAC | 1 cut(s) | 490 |
| MalI | GATC | 3 cut(s) | 356, 455, 538 |
| MboI | GATC | 3 cut(s) | 354, 453, 536 |
| MboII | GAAGA | 2 cut(s) | 391, 532 |
| MflI | RGATCY | 1 cut(s) | 536 |
| MhlI | GDGCHC | 1 cut(s) | 474 |
| MluCI | AATT | 4 cut(s) | 17, 338, 529, 568 |
| MlyI | GAGTC | 2 cut(s) | 214, 376 |
| MnlI | CCTC | 2 cut(s) | 181, 278 |
| MroI | TCCGGA | 1 cut(s) | 559 |
| MroXI | GAANNNNTTC | 1 cut(s) | 315 |
| MseI | TTAA | 3 cut(s) | 324, 332, 441 |
| MslI | CAYNNNNRTG | 2 cut(s) | 215, 231 |
| MspI | CCGG | 1 cut(s) | 560 |
| MspR9I | CCNGG | 1 cut(s) | 131 |
| MvaI | CCWGG | 1 cut(s) | 131 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 167, 176, 188 |
| NdeI | CATATG | 2 cut(s) | 228, 361 |
| NdeII | GATC | 3 cut(s) | 354, 453, 536 |
| NlaIII | CATG | 1 cut(s) | 506 |
| NmuCI | GTSAC | 1 cut(s) | 490 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PdmI | GAANNNNTTC | 1 cut(s) | 315 |
| PfeI | GAWTC | 4 cut(s) | 102, 115, 432, 563 |
| PkrI | GCNGC | 1 cut(s) | 181 |
| PleI | GAGTC | 2 cut(s) | 214, 376 |
| PpsI | GAGTC | 2 cut(s) | 214, 376 |
| Psp124BI | GAGCTC | 1 cut(s) | 474 |
| Psp6I | CCWGG | 1 cut(s) | 129 |
| PspGI | CCWGG | 1 cut(s) | 129 |
| PsuI | RGATCY | 1 cut(s) | 536 |
| RsaI | GTAC | 1 cut(s) | 248 |
| RsaNI | GTAC | 1 cut(s) | 247 |
| RseI | CAYNNNNRTG | 2 cut(s) | 215, 231 |
| SacI | GAGCTC | 1 cut(s) | 474 |
| SaqAI | TTAA | 3 cut(s) | 324, 332, 441 |
| SatI | GCNGC | 1 cut(s) | 180 |
| Sau3AI | GATC | 3 cut(s) | 354, 453, 536 |
| SchI | GAGTC | 2 cut(s) | 214, 376 |
| ScrFI | CCNGG | 1 cut(s) | 131 |
| SduI | GDGCHC | 1 cut(s) | 474 |
| SetI | ASST | 9 cut(s) | 65, 138, 157, 201, 395, 464, 474, 484, 584 |
| SfaNI | GCATC | 1 cut(s) | 94 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 215, 231 |
| SmlI | CTYRAG | 2 cut(s) | 89, 119 |
| SmoI | CTYRAG | 2 cut(s) | 89, 119 |
| Sse9I | AATT | 4 cut(s) | 17, 338, 529, 568 |
| SsiI | CCGC | 2 cut(s) | 79, 271 |
| SspMI | CTAG | 1 cut(s) | 126 |
| SstI | GAGCTC | 1 cut(s) | 474 |
| StyD4I | CCNGG | 1 cut(s) | 129 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TaiI | ACGT | 1 cut(s) | 138 |
| TaqI | TCGA | 4 cut(s) | 120, 430, 435, 533 |
| TasI | AATT | 4 cut(s) | 17, 338, 529, 568 |
| TfiI | GAWTC | 4 cut(s) | 102, 115, 432, 563 |
| Tru1I | TTAA | 3 cut(s) | 324, 332, 441 |
| Tru9I | TTAA | 3 cut(s) | 324, 332, 441 |
| TseFI | GTSAC | 1 cut(s) | 490 |
| TseI | GCWGC | 1 cut(s) | 179 |
| Tsp45I | GTSAC | 1 cut(s) | 490 |
| TspDTI | ATGAA | 1 cut(s) | 500 |
| TspGWI | ACGGA | 2 cut(s) | 466, 529 |
| XapI | RAATTY | 1 cut(s) | 338 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XmnI | GAANNNNTTC | 1 cut(s) | 315 |
| XspI | CTAG | 1 cut(s) | 126 |