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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 381 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 447 |
| AccII | CGCG | 1 cut(s) | 387 |
| AccIII | TCCGGA | 2 cut(s) | 367, 640 |
| AciI | CCGC | 3 cut(s) | 20, 79, 481 |
| AclI | AACGTT | 1 cut(s) | 517 |
| AcyI | GRCGYC | 1 cut(s) | 561 |
| AfaI | GTAC | 1 cut(s) | 102 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 469 |
| AgsI | TTSAA | 1 cut(s) | 94 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 94 |
| AluBI | AGCT | 2 cut(s) | 122, 302 |
| AluI | AGCT | 2 cut(s) | 122, 302 |
| Ama87I | CYCGRG | 1 cut(s) | 12 |
| Aor13HI | TCCGGA | 2 cut(s) | 367, 640 |
| AoxI | GGCC | 3 cut(s) | 288, 535, 650 |
| ApeKI | GCWGC | 2 cut(s) | 17, 46 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 305, 337 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 123 |
| AspLEI | GCGC | 1 cut(s) | 389 |
| AspS9I | GGNCC | 3 cut(s) | 288, 353, 449 |
| AsuHPI | GGTGA | 2 cut(s) | 452, 569 |
| AvaI | CYCGRG | 1 cut(s) | 12 |
| AvaII | GGWCC | 2 cut(s) | 353, 449 |
| BbsI | GAAGAC | 2 cut(s) | 194, 616 |
| BbvI | GCAGC | 2 cut(s) | 29, 33 |
| BccI | CCATC | 5 cut(s) | 60, 136, 170, 215, 572 |
| BclI | TGATCA | 1 cut(s) | 592 |
| BfaI | CTAG | 2 cut(s) | 50, 342 |
| BisI | GCNGC | 2 cut(s) | 18, 47 |
| BlsI | GCNGC | 2 cut(s) | 19, 48 |
| Bme18I | GGWCC | 2 cut(s) | 353, 449 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 94 |
| BmeT110I | CYCGRG | 1 cut(s) | 12 |
| BmgT120I | GGNCC | 3 cut(s) | 288, 353, 449 |
| BmiI | GGNNCC | 4 cut(s) | 289, 354, 355, 602 |
| BmsI | GCATC | 1 cut(s) | 392 |
| BpiI | GAAGAC | 2 cut(s) | 194, 616 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 401, 433 |
| BsaBI | GATNNNNATC | 1 cut(s) | 179 |
| BsaHI | GRCGYC | 1 cut(s) | 561 |
| BsaJI | CCNNGG | 1 cut(s) | 505 |
| BsaWI | WCCGGW | 2 cut(s) | 367, 640 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 469 |
| Bse8I | GATNNNNATC | 1 cut(s) | 179 |
| BseAI | TCCGGA | 2 cut(s) | 367, 640 |
| BseDI | CCNNGG | 1 cut(s) | 505 |
| BseGI | GGATG | 1 cut(s) | 564 |
| BseJI | GATNNNNATC | 1 cut(s) | 179 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 469 |
| BseMII | CTCAG | 1 cut(s) | 294 |
| BseXI | GCAGC | 2 cut(s) | 29, 33 |
| Bsh1236I | CGCG | 1 cut(s) | 387 |
| BshFI | GGCC | 3 cut(s) | 290, 537, 652 |
| BsiHKCI | CYCGRG | 1 cut(s) | 12 |
| BsiSI | CCGG | 2 cut(s) | 368, 641 |
| BslFI | GGGAC | 1 cut(s) | 366 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 469 |
| BsmFI | GGGAC | 1 cut(s) | 366 |
| BsnI | GGCC | 3 cut(s) | 290, 537, 652 |
| BsoBI | CYCGRG | 1 cut(s) | 12 |
| Bsp13I | TCCGGA | 2 cut(s) | 367, 640 |
| Bsp143I | GATC | 1 cut(s) | 592 |
| BspACI | CCGC | 3 cut(s) | 20, 79, 481 |
| BspANI | GGCC | 3 cut(s) | 290, 537, 652 |
| BspCNI | CTCAG | 1 cut(s) | 295 |
| BspEI | TCCGGA | 2 cut(s) | 367, 640 |
| BspFNI | CGCG | 1 cut(s) | 387 |
| BspLI | GGNNCC | 4 cut(s) | 289, 354, 355, 602 |
| BssECI | CCNNGG | 1 cut(s) | 505 |
| BssMI | GATC | 1 cut(s) | 592 |
| BssNI | GRCGYC | 1 cut(s) | 561 |
| Bst4CI | ACNGT | 1 cut(s) | 506 |
| BstACI | GRCGYC | 1 cut(s) | 561 |
| BstDEI | CTNAG | 2 cut(s) | 303, 420 |
| BstDSI | CCRYGG | 1 cut(s) | 505 |
| BstF5I | GGATG | 1 cut(s) | 564 |
| BstFNI | CGCG | 1 cut(s) | 387 |
| BstHHI | GCGC | 1 cut(s) | 389 |
| BstKTI | GATC | 1 cut(s) | 595 |
| BstMBI | GATC | 1 cut(s) | 592 |
| BstNSI | RCATGY | 1 cut(s) | 662 |
| BstUI | CGCG | 1 cut(s) | 387 |
| BstV1I | GCAGC | 2 cut(s) | 29, 33 |
| BstV2I | GAAGAC | 2 cut(s) | 194, 616 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 545 |
| BsuRI | GGCC | 3 cut(s) | 290, 537, 652 |
| BtgI | CCRYGG | 1 cut(s) | 505 |
| BtsCI | GGATG | 1 cut(s) | 564 |
| BtsIMutI | CAGTG | 1 cut(s) | 172 |
| CfoI | GCGC | 1 cut(s) | 389 |
| Cfr13I | GGNCC | 3 cut(s) | 288, 353, 449 |
| CseI | GACGC | 2 cut(s) | 569, 626 |
| Csp6I | GTAC | 1 cut(s) | 101 |
| CviAII | CATG | 3 cut(s) | 275, 292, 659 |
| CviJI | RGCY | 8 cut(s) | 75, 122, 290, 302, 537, 542, 549, 652 |
| CviKI_1 | RGCY | 8 cut(s) | 75, 122, 290, 302, 537, 542, 549, 652 |
| CviQI | GTAC | 1 cut(s) | 101 |
| DdeI | CTNAG | 2 cut(s) | 303, 420 |
| DpnI | GATC | 1 cut(s) | 594 |
| DpnII | GATC | 1 cut(s) | 592 |
| DraI | TTTAAA | 1 cut(s) | 522 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 447 |
| DriI | GACNNNNNGTC | 1 cut(s) | 94 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 447 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 94 |
| Eco47I | GGWCC | 2 cut(s) | 353, 449 |
| Eco88I | CYCGRG | 1 cut(s) | 12 |
| EcoO109I | RGGNCCY | 1 cut(s) | 353 |
| FaeI | CATG | 3 cut(s) | 278, 295, 662 |
| FaqI | GGGAC | 1 cut(s) | 366 |
| FatI | CATG | 3 cut(s) | 274, 291, 658 |
| FbaI | TGATCA | 1 cut(s) | 592 |
| Fnu4HI | GCNGC | 2 cut(s) | 18, 47 |
| FokI | GGATG | 1 cut(s) | 551 |
| Fsp4HI | GCNGC | 2 cut(s) | 18, 47 |
| FspBI | CTAG | 2 cut(s) | 50, 342 |
| GlaI | GCGC | 1 cut(s) | 388 |
| GluI | GCNGC | 2 cut(s) | 18, 47 |
| HaeIII | GGCC | 3 cut(s) | 290, 537, 652 |
| HapII | CCGG | 2 cut(s) | 368, 641 |
| HgaI | GACGC | 2 cut(s) | 569, 626 |
| HhaI | GCGC | 1 cut(s) | 389 |
| Hin1I | GRCGYC | 1 cut(s) | 561 |
| Hin1II | CATG | 3 cut(s) | 278, 295, 662 |
| Hin6I | GCGC | 1 cut(s) | 387 |
| HinP1I | GCGC | 1 cut(s) | 387 |
| HincII | GTYRAC | 2 cut(s) | 25, 515 |
| HindII | GTYRAC | 2 cut(s) | 25, 515 |
| HinfI | GANTC | 4 cut(s) | 38, 190, 258, 371 |
| HpaI | GTTAAC | 1 cut(s) | 25 |
| HpaII | CCGG | 2 cut(s) | 368, 641 |
| HphI | GGTGA | 2 cut(s) | 452, 569 |
| Hpy166II | GTNNAC | 2 cut(s) | 25, 515 |
| Hpy188I | TCNGA | 1 cut(s) | 240 |
| Hpy188III | TCNNGA | 6 cut(s) | 35, 184, 342, 368, 438, 641 |
| Hpy8I | GTNNAC | 2 cut(s) | 25, 515 |
| HpyAV | CCTTC | 2 cut(s) | 211, 467 |
| HpyCH4III | ACNGT | 1 cut(s) | 506 |
| HpyCH4IV | ACGT | 3 cut(s) | 442, 517, 573 |
| HpyCH4V | TGCA | 4 cut(s) | 215, 227, 254, 405 |
| HpyF3I | CTNAG | 2 cut(s) | 303, 420 |
| HpySE526I | ACGT | 3 cut(s) | 442, 517, 573 |
| Hsp92I | GRCGYC | 1 cut(s) | 561 |
| Hsp92II | CATG | 3 cut(s) | 278, 295, 662 |
| HspAI | GCGC | 1 cut(s) | 387 |
| KflI | GGGWCCC | 1 cut(s) | 353 |
| Kpn2I | TCCGGA | 2 cut(s) | 367, 640 |
| Ksp22I | TGATCA | 1 cut(s) | 592 |
| KspAI | GTTAAC | 1 cut(s) | 25 |
| Kzo9I | GATC | 1 cut(s) | 592 |
| LmnI | GCTCC | 2 cut(s) | 409, 634 |
| LpnPI | CCDG | 6 cut(s) | 240, 381, 423, 432, 531, 654 |
| Lsp1109I | GCAGC | 2 cut(s) | 29, 33 |
| LweI | GCATC | 1 cut(s) | 392 |
| MaeI | CTAG | 2 cut(s) | 50, 342 |
| MaeII | ACGT | 3 cut(s) | 442, 517, 573 |
| MaeIII | GTNAC | 5 cut(s) | 35, 86, 325, 557, 574 |
| MalI | GATC | 1 cut(s) | 594 |
| MboI | GATC | 1 cut(s) | 592 |
| MboII | GAAGA | 2 cut(s) | 199, 616 |
| MluCI | AATT | 5 cut(s) | 112, 232, 358, 376, 433 |
| MlyI | GAGTC | 4 cut(s) | 32, 184, 252, 380 |
| MnlI | CCTC | 5 cut(s) | 86, 463, 503, 553, 578 |
| MroI | TCCGGA | 2 cut(s) | 367, 640 |
| MroXI | GAANNNNTTC | 1 cut(s) | 123 |
| MseI | TTAA | 2 cut(s) | 24, 521 |
| MspA1I | CMGCKG | 1 cut(s) | 20 |
| MspI | CCGG | 2 cut(s) | 368, 641 |
| MvnI | CGCG | 1 cut(s) | 387 |
| NdeII | GATC | 1 cut(s) | 592 |
| NlaIII | CATG | 3 cut(s) | 278, 295, 662 |
| NlaIV | GGNNCC | 4 cut(s) | 289, 354, 355, 602 |
| NmuCI | GTSAC | 4 cut(s) | 35, 86, 325, 557 |
| NspI | RCATGY | 1 cut(s) | 662 |
| PaeR7I | CTCGAG | 1 cut(s) | 12 |
| PdmI | GAANNNNTTC | 1 cut(s) | 123 |
| PkrI | GCNGC | 2 cut(s) | 19, 48 |
| PleI | GAGTC | 4 cut(s) | 32, 184, 252, 379 |
| PpsI | GAGTC | 4 cut(s) | 32, 184, 252, 379 |
| PpuMI | RGGWCCY | 1 cut(s) | 353 |
| PsiI | TTATAA | 1 cut(s) | 381 |
| Psp1406I | AACGTT | 1 cut(s) | 517 |
| Psp5II | RGGWCCY | 1 cut(s) | 353 |
| PspN4I | GGNNCC | 4 cut(s) | 289, 354, 355, 602 |
| PspPI | GGNCC | 3 cut(s) | 288, 353, 449 |
| PspPPI | RGGWCCY | 1 cut(s) | 353 |
| PspXI | VCTCGAGB | 1 cut(s) | 12 |
| RsaI | GTAC | 1 cut(s) | 102 |
| RsaNI | GTAC | 1 cut(s) | 101 |
| SaqAI | TTAA | 2 cut(s) | 24, 521 |
| SatI | GCNGC | 2 cut(s) | 18, 47 |
| Sau3AI | GATC | 1 cut(s) | 592 |
| Sau96I | GGNCC | 3 cut(s) | 288, 353, 449 |
| SchI | GAGTC | 4 cut(s) | 32, 184, 252, 380 |
| SetI | ASST | 9 cut(s) | 124, 203, 272, 304, 445, 514, 520, 576, 606 |
| SfaNI | GCATC | 1 cut(s) | 392 |
| Sfr274I | CTCGAG | 1 cut(s) | 12 |
| SinI | GGWCC | 2 cut(s) | 353, 449 |
| SlaI | CTCGAG | 1 cut(s) | 12 |
| SmlI | CTYRAG | 1 cut(s) | 12 |
| SmoI | CTYRAG | 1 cut(s) | 12 |
| Sse9I | AATT | 5 cut(s) | 112, 232, 358, 376, 433 |
| SsiI | CCGC | 3 cut(s) | 20, 79, 481 |
| SspMI | CTAG | 2 cut(s) | 50, 342 |
| TaaI | ACNGT | 1 cut(s) | 506 |
| TaiI | ACGT | 3 cut(s) | 445, 520, 576 |
| TaqI | TCGA | 2 cut(s) | 13, 183 |
| TasI | AATT | 5 cut(s) | 112, 232, 358, 376, 433 |
| TatI | WGTACW | 1 cut(s) | 100 |
| Tru1I | TTAA | 2 cut(s) | 24, 521 |
| Tru9I | TTAA | 2 cut(s) | 24, 521 |
| TscAI | CASTG | 1 cut(s) | 172 |
| TseFI | GTSAC | 4 cut(s) | 35, 86, 325, 557 |
| TseI | GCWGC | 2 cut(s) | 17, 46 |
| Tsp45I | GTSAC | 4 cut(s) | 35, 86, 325, 557 |
| TspDTI | ATGAA | 2 cut(s) | 263, 308 |
| TspRI | CASTG | 1 cut(s) | 172 |
| VpaK11BI | GGWCC | 2 cut(s) | 353, 449 |
| XbaI | TCTAGA | 1 cut(s) | 341 |
| XceI | RCATGY | 1 cut(s) | 662 |
| XhoI | CTCGAG | 1 cut(s) | 12 |
| XmnI | GAANNNNTTC | 1 cut(s) | 123 |
| XspI | CTAG | 2 cut(s) | 50, 342 |