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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 398 |
| AccI | GTMKAC | 1 cut(s) | 269 |
| AciI | CCGC | 2 cut(s) | 250, 319 |
| AclWI | GGATC | 1 cut(s) | 281 |
| AcoI | YGGCCR | 1 cut(s) | 385 |
| AcyI | GRCGYC | 1 cut(s) | 399 |
| AdeI | CACNNNGTG | 2 cut(s) | 414, 580 |
| AfaI | GTAC | 1 cut(s) | 137 |
| AgsI | TTSAA | 2 cut(s) | 265, 436 |
| AjiI | CACGTC | 1 cut(s) | 25 |
| AjnI | CCWGG | 1 cut(s) | 18 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 177, 209 |
| AluBI | AGCT | 4 cut(s) | 44, 50, 521, 572 |
| AluI | AGCT | 4 cut(s) | 44, 50, 521, 572 |
| Alw21I | GWGCWC | 1 cut(s) | 523 |
| Alw26I | GTCTC | 1 cut(s) | 181 |
| AlwI | GGATC | 1 cut(s) | 281 |
| Ama87I | CYCGRG | 1 cut(s) | 8 |
| AoxI | GGCC | 1 cut(s) | 385 |
| ApeKI | GCWGC | 1 cut(s) | 68 |
| AspLEI | GCGC | 2 cut(s) | 401, 442 |
| AvaI | CYCGRG | 1 cut(s) | 8 |
| BaeGI | GKGCMC | 1 cut(s) | 508 |
| BalI | TGGCCA | 1 cut(s) | 387 |
| BanI | GGYRCC | 1 cut(s) | 398 |
| BanII | GRGCYC | 1 cut(s) | 523 |
| BauI | CACGAG | 1 cut(s) | 522 |
| BbsI | GAAGAC | 1 cut(s) | 162 |
| Bbv12I | GWGCWC | 1 cut(s) | 523 |
| BbvI | GCAGC | 1 cut(s) | 80 |
| BccI | CCATC | 3 cut(s) | 104, 231, 426 |
| BciT130I | CCWGG | 1 cut(s) | 20 |
| BcoDI | GTCTC | 1 cut(s) | 181 |
| BfaI | CTAG | 3 cut(s) | 15, 227, 608 |
| BfoI | RGCGCY | 2 cut(s) | 402, 443 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 77 |
| BisI | GCNGC | 1 cut(s) | 69 |
| BlsI | GCNGC | 1 cut(s) | 70 |
| Bme1390I | CCNGG | 1 cut(s) | 20 |
| BmeT110I | CYCGRG | 1 cut(s) | 8 |
| BmgBI | CACGTC | 1 cut(s) | 25 |
| BmiI | GGNNCC | 2 cut(s) | 341, 400 |
| BmrFI | CCNGG | 1 cut(s) | 20 |
| BpiI | GAAGAC | 1 cut(s) | 162 |
| BpmI | CTGGAG | 1 cut(s) | 116 |
| BpuEI | CTTGAG | 1 cut(s) | 30 |
| BsaHI | GRCGYC | 1 cut(s) | 399 |
| BsaI | GGTCTC | 1 cut(s) | 181 |
| Bse1I | ACTGG | 2 cut(s) | 133, 537 |
| BseBI | CCWGG | 1 cut(s) | 20 |
| BseGI | GGATG | 2 cut(s) | 99, 127 |
| BseMII | CTCAG | 1 cut(s) | 486 |
| BseNI | ACTGG | 2 cut(s) | 133, 537 |
| BseSI | GKGCMC | 1 cut(s) | 508 |
| BseXI | GCAGC | 1 cut(s) | 80 |
| BshFI | GGCC | 1 cut(s) | 387 |
| BshNI | GGYRCC | 1 cut(s) | 398 |
| BsiHKAI | GWGCWC | 1 cut(s) | 523 |
| BsiHKCI | CYCGRG | 1 cut(s) | 8 |
| BsmAI | GTCTC | 1 cut(s) | 181 |
| BsnI | GGCC | 1 cut(s) | 387 |
| Bso31I | GGTCTC | 1 cut(s) | 181 |
| BsoBI | CYCGRG | 1 cut(s) | 8 |
| Bsp1286I | GDGCHC | 2 cut(s) | 508, 523 |
| Bsp143I | GATC | 3 cut(s) | 286, 592, 604 |
| BspACI | CCGC | 2 cut(s) | 250, 319 |
| BspANI | GGCC | 1 cut(s) | 387 |
| BspCNI | CTCAG | 1 cut(s) | 487 |
| BspLI | GGNNCC | 2 cut(s) | 341, 400 |
| BspPI | GGATC | 1 cut(s) | 281 |
| BspT107I | GGYRCC | 1 cut(s) | 398 |
| BspTNI | GGTCTC | 1 cut(s) | 181 |
| BsrI | ACTGG | 2 cut(s) | 133, 537 |
| BssMI | GATC | 3 cut(s) | 286, 592, 604 |
| BssNAI | GTATAC | 1 cut(s) | 270 |
| BssNI | GRCGYC | 1 cut(s) | 399 |
| BssSI | CACGAG | 1 cut(s) | 522 |
| Bst1107I | GTATAC | 1 cut(s) | 270 |
| Bst2BI | CACGAG | 1 cut(s) | 522 |
| Bst2UI | CCWGG | 1 cut(s) | 20 |
| Bst4CI | ACNGT | 1 cut(s) | 34 |
| Bst6I | CTCTTC | 1 cut(s) | 340 |
| BstACI | GRCGYC | 1 cut(s) | 399 |
| BstC8I | GCNNGC | 1 cut(s) | 42 |
| BstDEI | CTNAG | 3 cut(s) | 73, 411, 495 |
| BstEII | GGTNACC | 1 cut(s) | 314 |
| BstF5I | GGATG | 2 cut(s) | 99, 127 |
| BstH2I | RGCGCY | 2 cut(s) | 402, 443 |
| BstHHI | GCGC | 2 cut(s) | 401, 442 |
| BstKTI | GATC | 3 cut(s) | 289, 595, 607 |
| BstMAI | GTCTC | 1 cut(s) | 181 |
| BstMBI | GATC | 3 cut(s) | 286, 592, 604 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 56, 65, 77, 86, 437, 548, 569 |
| BstNI | CCWGG | 1 cut(s) | 20 |
| BstPI | GGTNACC | 1 cut(s) | 314 |
| BstSCI | CCNGG | 1 cut(s) | 18 |
| BstSLI | GKGCMC | 1 cut(s) | 508 |
| BstV1I | GCAGC | 1 cut(s) | 80 |
| BstV2I | GAAGAC | 1 cut(s) | 162 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 395 |
| BstZ17I | GTATAC | 1 cut(s) | 270 |
| BsuRI | GGCC | 1 cut(s) | 387 |
| BtrI | CACGTC | 1 cut(s) | 25 |
| BtsCI | GGATG | 2 cut(s) | 99, 127 |
| Cac8I | GCNNGC | 1 cut(s) | 42 |
| CfoI | GCGC | 2 cut(s) | 401, 442 |
| CseI | GACGC | 1 cut(s) | 437 |
| Csp6I | GTAC | 1 cut(s) | 136 |
| CviAII | CATG | 1 cut(s) | 389 |
| CviQI | GTAC | 1 cut(s) | 136 |
| DdeI | CTNAG | 3 cut(s) | 73, 411, 495 |
| DinI | GGCGCC | 1 cut(s) | 400 |
| DpnI | GATC | 3 cut(s) | 288, 594, 606 |
| DpnII | GATC | 3 cut(s) | 286, 592, 604 |
| DraIII | CACNNNGTG | 2 cut(s) | 414, 580 |
| EaeI | YGGCCR | 1 cut(s) | 385 |
| Eam1104I | CTCTTC | 1 cut(s) | 340 |
| EarI | CTCTTC | 1 cut(s) | 340 |
| Ecl136II | GAGCTC | 1 cut(s) | 521 |
| Eco24I | GRGCYC | 1 cut(s) | 523 |
| Eco31I | GGTCTC | 1 cut(s) | 181 |
| Eco53kI | GAGCTC | 1 cut(s) | 521 |
| Eco88I | CYCGRG | 1 cut(s) | 8 |
| Eco91I | GGTNACC | 1 cut(s) | 314 |
| EcoICRI | GAGCTC | 1 cut(s) | 521 |
| EcoO65I | GGTNACC | 1 cut(s) | 314 |
| EcoRII | CCWGG | 1 cut(s) | 18 |
| EcoT38I | GRGCYC | 1 cut(s) | 523 |
| EgeI | GGCGCC | 1 cut(s) | 400 |
| EheI | GGCGCC | 1 cut(s) | 400 |
| FaeI | CATG | 1 cut(s) | 392 |
| FatI | CATG | 1 cut(s) | 388 |
| FauNDI | CATATG | 1 cut(s) | 117 |
| FblI | GTMKAC | 1 cut(s) | 269 |
| Fnu4HI | GCNGC | 1 cut(s) | 69 |
| FokI | GGATG | 2 cut(s) | 86, 134 |
| FriOI | GRGCYC | 1 cut(s) | 523 |
| Fsp4HI | GCNGC | 1 cut(s) | 69 |
| FspBI | CTAG | 3 cut(s) | 15, 227, 608 |
| GlaI | GCGC | 2 cut(s) | 400, 441 |
| GluI | GCNGC | 1 cut(s) | 69 |
| GsuI | CTGGAG | 1 cut(s) | 116 |
| HaeII | RGCGCY | 2 cut(s) | 402, 443 |
| HaeIII | GGCC | 1 cut(s) | 387 |
| HgaI | GACGC | 1 cut(s) | 437 |
| HhaI | GCGC | 2 cut(s) | 401, 442 |
| Hin1I | GRCGYC | 1 cut(s) | 399 |
| Hin1II | CATG | 1 cut(s) | 392 |
| Hin6I | GCGC | 2 cut(s) | 399, 440 |
| HinP1I | GCGC | 2 cut(s) | 399, 440 |
| HindIII | AAGCTT | 1 cut(s) | 48 |
| HinfI | GANTC | 4 cut(s) | 4, 109, 125, 209 |
| Hpy166II | GTNNAC | 1 cut(s) | 270 |
| Hpy188I | TCNGA | 2 cut(s) | 286, 496 |
| Hpy188III | TCNNGA | 7 cut(s) | 8, 221, 276, 480, 524, 596, 608 |
| Hpy8I | GTNNAC | 1 cut(s) | 270 |
| HpyAV | CCTTC | 2 cut(s) | 159, 305 |
| HpyCH4III | ACNGT | 1 cut(s) | 34 |
| HpyCH4IV | ACGT | 3 cut(s) | 24, 201, 355 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 56, 65, 77, 86, 437, 548, 569 |
| HpyF3I | CTNAG | 3 cut(s) | 73, 411, 495 |
| HpySE526I | ACGT | 3 cut(s) | 24, 201, 355 |
| Hsp92I | GRCGYC | 1 cut(s) | 399 |
| Hsp92II | CATG | 1 cut(s) | 392 |
| HspAI | GCGC | 2 cut(s) | 399, 440 |
| KasI | GGCGCC | 1 cut(s) | 398 |
| Kzo9I | GATC | 3 cut(s) | 286, 592, 604 |
| LmnI | GCTCC | 1 cut(s) | 135 |
| LpnPI | CCDG | 8 cut(s) | 5, 32, 146, 175, 234, 261, 369, 518 |
| Lsp1109I | GCAGC | 1 cut(s) | 80 |
| MaeI | CTAG | 3 cut(s) | 15, 227, 608 |
| MaeII | ACGT | 3 cut(s) | 24, 201, 355 |
| MaeIII | GTNAC | 3 cut(s) | 206, 314, 535 |
| MalI | GATC | 3 cut(s) | 288, 594, 606 |
| MboI | GATC | 3 cut(s) | 286, 592, 604 |
| MboII | GAAGA | 7 cut(s) | 164, 167, 197, 357, 539, 602, 611 |
| MhlI | GDGCHC | 2 cut(s) | 508, 523 |
| MlsI | TGGCCA | 1 cut(s) | 387 |
| MluNI | TGGCCA | 1 cut(s) | 387 |
| Mly113I | GGCGCC | 1 cut(s) | 399 |
| MlyI | GAGTC | 2 cut(s) | 103, 203 |
| MnlI | CCTC | 6 cut(s) | 70, 257, 361, 365, 391, 453 |
| Mox20I | TGGCCA | 1 cut(s) | 387 |
| MscI | TGGCCA | 1 cut(s) | 387 |
| MslI | CAYNNNNRTG | 4 cut(s) | 104, 120, 393, 423 |
| Msp20I | TGGCCA | 1 cut(s) | 387 |
| MspR9I | CCNGG | 1 cut(s) | 20 |
| MvaI | CCWGG | 1 cut(s) | 20 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 56, 65, 77, 86, 437, 548, 569 |
| NarI | GGCGCC | 1 cut(s) | 399 |
| NdeI | CATATG | 1 cut(s) | 117 |
| NdeII | GATC | 3 cut(s) | 286, 592, 604 |
| NlaIII | CATG | 1 cut(s) | 392 |
| NlaIV | GGNNCC | 2 cut(s) | 341, 400 |
| NmuCI | GTSAC | 2 cut(s) | 206, 535 |
| PaeR7I | CTCGAG | 1 cut(s) | 8 |
| PfeI | GAWTC | 2 cut(s) | 4, 125 |
| PkrI | GCNGC | 1 cut(s) | 70 |
| PleI | GAGTC | 2 cut(s) | 103, 203 |
| PluTI | GGCGCC | 1 cut(s) | 402 |
| PpsI | GAGTC | 2 cut(s) | 103, 203 |
| Psp124BI | GAGCTC | 1 cut(s) | 523 |
| Psp6I | CCWGG | 1 cut(s) | 18 |
| PspEI | GGTNACC | 1 cut(s) | 314 |
| PspGI | CCWGG | 1 cut(s) | 18 |
| PspN4I | GGNNCC | 2 cut(s) | 341, 400 |
| RsaI | GTAC | 1 cut(s) | 137 |
| RsaNI | GTAC | 1 cut(s) | 136 |
| RseI | CAYNNNNRTG | 4 cut(s) | 104, 120, 393, 423 |
| SacI | GAGCTC | 1 cut(s) | 523 |
| SatI | GCNGC | 1 cut(s) | 69 |
| Sau3AI | GATC | 3 cut(s) | 286, 592, 604 |
| SchI | GAGTC | 2 cut(s) | 103, 203 |
| ScrFI | CCNGG | 1 cut(s) | 20 |
| SduI | GDGCHC | 2 cut(s) | 508, 523 |
| SetI | ASST | 9 cut(s) | 27, 46, 52, 204, 228, 316, 358, 523, 574 |
| SfoI | GGCGCC | 1 cut(s) | 400 |
| Sfr274I | CTCGAG | 1 cut(s) | 8 |
| SlaI | CTCGAG | 1 cut(s) | 8 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 104, 120, 393, 423 |
| SmlI | CTYRAG | 2 cut(s) | 8, 45 |
| SmoI | CTYRAG | 2 cut(s) | 8, 45 |
| SsiI | CCGC | 2 cut(s) | 250, 319 |
| SspDI | GGCGCC | 1 cut(s) | 398 |
| SspMI | CTAG | 3 cut(s) | 15, 227, 608 |
| SstI | GAGCTC | 1 cut(s) | 523 |
| StyD4I | CCNGG | 1 cut(s) | 18 |
| TaaI | ACNGT | 1 cut(s) | 34 |
| TaiI | ACGT | 3 cut(s) | 27, 204, 358 |
| TaqI | TCGA | 4 cut(s) | 9, 183, 459, 481 |
| TfiI | GAWTC | 2 cut(s) | 4, 125 |
| TseFI | GTSAC | 2 cut(s) | 206, 535 |
| TseI | GCWGC | 1 cut(s) | 68 |
| Tsp45I | GTSAC | 2 cut(s) | 206, 535 |
| TspDTI | ATGAA | 2 cut(s) | 161, 165 |
| TspGWI | ACGGA | 2 cut(s) | 194, 352 |
| XbaI | TCTAGA | 1 cut(s) | 607 |
| XhoI | CTCGAG | 1 cut(s) | 8 |
| XmiI | GTMKAC | 1 cut(s) | 269 |
| XspI | CTAG | 3 cut(s) | 15, 227, 608 |