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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 582 |
| AccB1I | GGYRCC | 1 cut(s) | 626 |
| AciI | CCGC | 2 cut(s) | 97, 283 |
| AclWI | GGATC | 4 cut(s) | 71, 74, 473, 514 |
| AcsI | RAATTY | 2 cut(s) | 9, 350 |
| AcuI | CTGAAG | 1 cut(s) | 59 |
| AcyI | GRCGYC | 3 cut(s) | 579, 627, 797 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 590, 678, 779 |
| AgsI | TTSAA | 3 cut(s) | 15, 298, 706 |
| AjnI | CCWGG | 1 cut(s) | 147 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 210, 242, 698, 730 |
| AluBI | AGCT | 3 cut(s) | 43, 173, 179 |
| AluI | AGCT | 3 cut(s) | 43, 173, 179 |
| Alw26I | GTCTC | 4 cut(s) | 214, 418, 515, 762 |
| AlwI | GGATC | 4 cut(s) | 71, 74, 473, 514 |
| Ama87I | CYCGRG | 1 cut(s) | 137 |
| AoxI | GGCC | 4 cut(s) | 111, 663, 669, 692 |
| ApeKI | GCWGC | 2 cut(s) | 197, 554 |
| ApoI | RAATTY | 2 cut(s) | 9, 350 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 327 |
| AspLEI | GCGC | 2 cut(s) | 602, 629 |
| AspS9I | GGNCC | 2 cut(s) | 670, 693 |
| AsuC2I | CCSGG | 1 cut(s) | 774 |
| AvaI | CYCGRG | 1 cut(s) | 137 |
| BanI | GGYRCC | 1 cut(s) | 626 |
| BbsI | GAAGAC | 1 cut(s) | 398 |
| BbvI | GCAGC | 2 cut(s) | 209, 541 |
| BccI | CCATC | 3 cut(s) | 110, 264, 418 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 437, 471 |
| BciT130I | CCWGG | 1 cut(s) | 149 |
| BclI | TGATCA | 1 cut(s) | 735 |
| BcnI | CCSGG | 1 cut(s) | 774 |
| BcoDI | GTCTC | 4 cut(s) | 214, 418, 515, 762 |
| BfaI | CTAG | 4 cut(s) | 32, 144, 260, 678 |
| BfoI | RGCGCY | 2 cut(s) | 603, 630 |
| BisI | GCNGC | 2 cut(s) | 198, 555 |
| BlsI | GCNGC | 2 cut(s) | 199, 556 |
| Bme1390I | CCNGG | 2 cut(s) | 149, 774 |
| BmeT110I | CYCGRG | 1 cut(s) | 137 |
| BmgT120I | GGNCC | 2 cut(s) | 670, 693 |
| BmiI | GGNNCC | 2 cut(s) | 628, 672 |
| BmrFI | CCNGG | 2 cut(s) | 149, 774 |
| BmsI | GCATC | 3 cut(s) | 112, 364, 672 |
| BpiI | GAAGAC | 1 cut(s) | 398 |
| BpuEI | CTTGAG | 2 cut(s) | 92, 159 |
| BpuMI | CCSGG | 1 cut(s) | 774 |
| Bsa29I | ATCGAT | 1 cut(s) | 447 |
| BsaHI | GRCGYC | 3 cut(s) | 579, 627, 797 |
| BsaI | GGTCTC | 1 cut(s) | 214 |
| BsaJI | CCNNGG | 3 cut(s) | 80, 666, 696 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 590, 678, 779 |
| BseBI | CCWGG | 1 cut(s) | 149 |
| BseCI | ATCGAT | 1 cut(s) | 447 |
| BseDI | CCNNGG | 3 cut(s) | 80, 666, 696 |
| BseGI | GGATG | 1 cut(s) | 687 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 590, 678, 779 |
| BseMII | CTCAG | 1 cut(s) | 812 |
| BseXI | GCAGC | 2 cut(s) | 209, 541 |
| BshFI | GGCC | 4 cut(s) | 113, 665, 671, 694 |
| BshNI | GGYRCC | 1 cut(s) | 626 |
| BshVI | ATCGAT | 1 cut(s) | 447 |
| BsiHKCI | CYCGRG | 1 cut(s) | 137 |
| BsiSI | CCGG | 1 cut(s) | 773 |
| BslFI | GGGAC | 3 cut(s) | 484, 566, 808 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 590, 678, 779 |
| BsmAI | GTCTC | 4 cut(s) | 214, 418, 515, 762 |
| BsmBI | CGTCTC | 2 cut(s) | 418, 762 |
| BsmFI | GGGAC | 3 cut(s) | 484, 566, 808 |
| BsmI | GAATGC | 1 cut(s) | 77 |
| BsnI | GGCC | 4 cut(s) | 113, 665, 671, 694 |
| Bso31I | GGTCTC | 1 cut(s) | 214 |
| BsoBI | CYCGRG | 1 cut(s) | 137 |
| Bsp143I | GATC | 7 cut(s) | 66, 76, 366, 465, 519, 539, 735 |
| Bsp19I | CCATGG | 1 cut(s) | 666 |
| BspACI | CCGC | 2 cut(s) | 97, 283 |
| BspANI | GGCC | 4 cut(s) | 113, 665, 671, 694 |
| BspCNI | CTCAG | 1 cut(s) | 813 |
| BspDI | ATCGAT | 1 cut(s) | 447 |
| BspHI | TCATGA | 1 cut(s) | 760 |
| BspLI | GGNNCC | 2 cut(s) | 628, 672 |
| BspPI | GGATC | 4 cut(s) | 71, 74, 473, 514 |
| BspT107I | GGYRCC | 1 cut(s) | 626 |
| BspTNI | GGTCTC | 1 cut(s) | 214 |
| BssECI | CCNNGG | 3 cut(s) | 80, 666, 696 |
| BssMI | GATC | 7 cut(s) | 66, 76, 366, 465, 519, 539, 735 |
| BssNI | GRCGYC | 3 cut(s) | 579, 627, 797 |
| BssT1I | CCWWGG | 1 cut(s) | 666 |
| Bst2UI | CCWGG | 1 cut(s) | 149 |
| Bst4CI | ACNGT | 2 cut(s) | 163, 304 |
| BstACI | GRCGYC | 3 cut(s) | 579, 627, 797 |
| BstC8I | GCNNGC | 3 cut(s) | 101, 171, 567 |
| BstDEI | CTNAG | 3 cut(s) | 202, 432, 821 |
| BstDSI | CCRYGG | 3 cut(s) | 80, 666, 696 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 588 |
| BstF5I | GGATG | 1 cut(s) | 687 |
| BstH2I | RGCGCY | 2 cut(s) | 603, 630 |
| BstHHI | GCGC | 2 cut(s) | 602, 629 |
| BstKTI | GATC | 7 cut(s) | 69, 79, 369, 468, 522, 542, 738 |
| BstMAI | GTCTC | 4 cut(s) | 214, 418, 515, 762 |
| BstMBI | GATC | 7 cut(s) | 66, 76, 366, 465, 519, 539, 735 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 185, 194, 662, 691 |
| BstNI | CCWGG | 1 cut(s) | 149 |
| BstNSI | RCATGY | 1 cut(s) | 565 |
| BstSCI | CCNGG | 2 cut(s) | 147, 772 |
| BstV1I | GCAGC | 2 cut(s) | 209, 541 |
| BstV2I | GAAGAC | 1 cut(s) | 398 |
| Bsu15I | ATCGAT | 1 cut(s) | 447 |
| BsuRI | GGCC | 4 cut(s) | 113, 665, 671, 694 |
| BsuTUI | ATCGAT | 1 cut(s) | 447 |
| BtgI | CCRYGG | 3 cut(s) | 80, 666, 696 |
| BtgZI | GCGATG | 1 cut(s) | 392 |
| BtsCI | GGATG | 1 cut(s) | 687 |
| Cac8I | GCNNGC | 3 cut(s) | 101, 171, 567 |
| CciI | TCATGA | 1 cut(s) | 760 |
| CfoI | GCGC | 2 cut(s) | 602, 629 |
| Cfr13I | GGNCC | 2 cut(s) | 670, 693 |
| ClaI | ATCGAT | 1 cut(s) | 447 |
| CseI | GACGC | 1 cut(s) | 805 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 625, 660 |
| CviAII | CATG | 5 cut(s) | 491, 562, 623, 667, 761 |
| DdeI | CTNAG | 3 cut(s) | 202, 432, 821 |
| DinI | GGCGCC | 1 cut(s) | 628 |
| DpnI | GATC | 7 cut(s) | 68, 78, 368, 467, 521, 541, 737 |
| DpnII | GATC | 7 cut(s) | 66, 76, 366, 465, 519, 539, 735 |
| EciI | GGCGGA | 1 cut(s) | 86 |
| Eco130I | CCWWGG | 1 cut(s) | 666 |
| Eco31I | GGTCTC | 1 cut(s) | 214 |
| Eco32I | GATATC | 1 cut(s) | 94 |
| Eco57I | CTGAAG | 1 cut(s) | 59 |
| Eco88I | CYCGRG | 1 cut(s) | 137 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 588 |
| EcoRI | GAATTC | 1 cut(s) | 350 |
| EcoRII | CCWGG | 1 cut(s) | 147 |
| EcoRV | GATATC | 1 cut(s) | 94 |
| EcoT14I | CCWWGG | 1 cut(s) | 666 |
| EgeI | GGCGCC | 1 cut(s) | 628 |
| EheI | GGCGCC | 1 cut(s) | 628 |
| ErhI | CCWWGG | 1 cut(s) | 666 |
| Esp3I | CGTCTC | 2 cut(s) | 418, 762 |
| FaeI | CATG | 5 cut(s) | 494, 565, 626, 670, 764 |
| FaqI | GGGAC | 3 cut(s) | 484, 566, 808 |
| FatI | CATG | 5 cut(s) | 490, 561, 622, 666, 760 |
| FbaI | TGATCA | 1 cut(s) | 735 |
| Fnu4HI | GCNGC | 2 cut(s) | 198, 555 |
| FokI | GGATG | 1 cut(s) | 694 |
| Fsp4HI | GCNGC | 2 cut(s) | 198, 555 |
| FspBI | CTAG | 4 cut(s) | 32, 144, 260, 678 |
| GlaI | GCGC | 2 cut(s) | 601, 628 |
| GluI | GCNGC | 2 cut(s) | 198, 555 |
| HaeII | RGCGCY | 2 cut(s) | 603, 630 |
| HaeIII | GGCC | 4 cut(s) | 113, 665, 671, 694 |
| HapII | CCGG | 1 cut(s) | 773 |
| HgaI | GACGC | 1 cut(s) | 805 |
| HhaI | GCGC | 2 cut(s) | 602, 629 |
| Hin1I | GRCGYC | 3 cut(s) | 579, 627, 797 |
| Hin1II | CATG | 5 cut(s) | 494, 565, 626, 670, 764 |
| Hin6I | GCGC | 2 cut(s) | 600, 627 |
| HinP1I | GCGC | 2 cut(s) | 600, 627 |
| HindIII | AAGCTT | 2 cut(s) | 41, 177 |
| HinfI | GANTC | 7 cut(s) | 25, 120, 133, 242, 394, 444, 745 |
| HpaII | CCGG | 1 cut(s) | 773 |
| Hpy188I | TCNGA | 1 cut(s) | 8 |
| Hpy188III | TCNNGA | 9 cut(s) | 89, 137, 254, 298, 308, 517, 742, 761, 820 |
| HpyAV | CCTTC | 2 cut(s) | 415, 568 |
| HpyCH4III | ACNGT | 2 cut(s) | 163, 304 |
| HpyCH4IV | ACGT | 4 cut(s) | 234, 579, 595, 805 |
| HpyCH4V | TGCA | 5 cut(s) | 51, 419, 458, 557, 569 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 185, 194, 662, 691 |
| HpyF3I | CTNAG | 3 cut(s) | 202, 432, 821 |
| HpySE526I | ACGT | 4 cut(s) | 234, 579, 595, 805 |
| Hsp92I | GRCGYC | 3 cut(s) | 579, 627, 797 |
| Hsp92II | CATG | 5 cut(s) | 494, 565, 626, 670, 764 |
| HspAI | GCGC | 2 cut(s) | 600, 627 |
| KasI | GGCGCC | 1 cut(s) | 626 |
| Ksp22I | TGATCA | 1 cut(s) | 735 |
| Kzo9I | GATC | 7 cut(s) | 66, 76, 366, 465, 519, 539, 735 |
| LpnPI | CCDG | 9 cut(s) | 113, 134, 161, 267, 466, 579, 638, 647, 786 |
| Lsp1109I | GCAGC | 2 cut(s) | 209, 541 |
| LweI | GCATC | 3 cut(s) | 112, 364, 672 |
| MaeI | CTAG | 4 cut(s) | 32, 144, 260, 678 |
| MaeII | ACGT | 4 cut(s) | 234, 579, 595, 805 |
| MaeIII | GTNAC | 3 cut(s) | 239, 532, 657 |
| MalI | GATC | 7 cut(s) | 68, 78, 368, 467, 521, 541, 737 |
| MboI | GATC | 7 cut(s) | 66, 76, 366, 465, 519, 539, 735 |
| MboII | GAAGA | 3 cut(s) | 230, 403, 761 |
| MluCI | AATT | 2 cut(s) | 9, 350 |
| Mly113I | GGCGCC | 1 cut(s) | 627 |
| MlyI | GAGTC | 3 cut(s) | 236, 388, 739 |
| MnlI | CCTC | 7 cut(s) | 57, 199, 290, 584, 608, 684, 810 |
| MroXI | GAANNNNTTC | 1 cut(s) | 327 |
| MseI | TTAA | 4 cut(s) | 336, 344, 387, 528 |
| MslI | CAYNNNNRTG | 1 cut(s) | 549 |
| MspI | CCGG | 1 cut(s) | 773 |
| MspR9I | CCNGG | 2 cut(s) | 149, 774 |
| Mva1269I | GAATGC | 1 cut(s) | 77 |
| MvaI | CCWGG | 1 cut(s) | 149 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 185, 194, 662, 691 |
| NarI | GGCGCC | 1 cut(s) | 627 |
| NciI | CCSGG | 1 cut(s) | 774 |
| NcoI | CCATGG | 1 cut(s) | 666 |
| NdeII | GATC | 7 cut(s) | 66, 76, 366, 465, 519, 539, 735 |
| NlaIII | CATG | 5 cut(s) | 494, 565, 626, 670, 764 |
| NlaIV | GGNNCC | 2 cut(s) | 628, 672 |
| NmuCI | GTSAC | 2 cut(s) | 239, 532 |
| NspI | RCATGY | 1 cut(s) | 565 |
| PaeR7I | CTCGAG | 1 cut(s) | 137 |
| PagI | TCATGA | 1 cut(s) | 760 |
| PctI | GAATGC | 1 cut(s) | 77 |
| PdmI | GAANNNNTTC | 1 cut(s) | 327 |
| PfeI | GAWTC | 4 cut(s) | 25, 120, 133, 444 |
| PkrI | GCNGC | 2 cut(s) | 199, 556 |
| PleI | GAGTC | 3 cut(s) | 236, 388, 739 |
| PluTI | GGCGCC | 1 cut(s) | 630 |
| PpsI | GAGTC | 3 cut(s) | 236, 388, 739 |
| Psp6I | CCWGG | 1 cut(s) | 147 |
| PspGI | CCWGG | 1 cut(s) | 147 |
| PspN4I | GGNNCC | 2 cut(s) | 628, 672 |
| PspPI | GGNCC | 2 cut(s) | 670, 693 |
| RseI | CAYNNNNRTG | 1 cut(s) | 549 |
| SaqAI | TTAA | 4 cut(s) | 336, 344, 387, 528 |
| SatI | GCNGC | 2 cut(s) | 198, 555 |
| Sau3AI | GATC | 7 cut(s) | 66, 76, 366, 465, 519, 539, 735 |
| Sau96I | GGNCC | 2 cut(s) | 670, 693 |
| SchI | GAGTC | 3 cut(s) | 236, 388, 739 |
| ScrFI | CCNGG | 2 cut(s) | 149, 774 |
| SfaNI | GCATC | 3 cut(s) | 112, 364, 672 |
| SfoI | GGCGCC | 1 cut(s) | 628 |
| Sfr274I | CTCGAG | 1 cut(s) | 137 |
| SlaI | CTCGAG | 1 cut(s) | 137 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 549 |
| SmlI | CTYRAG | 3 cut(s) | 107, 137, 174 |
| SmoI | CTYRAG | 3 cut(s) | 107, 137, 174 |
| Sse9I | AATT | 2 cut(s) | 9, 350 |
| SsiI | CCGC | 2 cut(s) | 97, 283 |
| SspDI | GGCGCC | 1 cut(s) | 626 |
| SspI | AATATT | 1 cut(s) | 225 |
| SspMI | CTAG | 4 cut(s) | 32, 144, 260, 678 |
| StyD4I | CCNGG | 2 cut(s) | 147, 772 |
| StyI | CCWWGG | 1 cut(s) | 666 |
| TaaI | ACNGT | 2 cut(s) | 163, 304 |
| TaiI | ACGT | 4 cut(s) | 237, 582, 598, 808 |
| TaqI | TCGA | 5 cut(s) | 69, 138, 216, 442, 447 |
| TasI | AATT | 2 cut(s) | 9, 350 |
| TfiI | GAWTC | 4 cut(s) | 25, 120, 133, 444 |
| Tru1I | TTAA | 4 cut(s) | 336, 344, 387, 528 |
| Tru9I | TTAA | 4 cut(s) | 336, 344, 387, 528 |
| TseFI | GTSAC | 2 cut(s) | 239, 532 |
| TseI | GCWGC | 2 cut(s) | 197, 554 |
| Tsp45I | GTSAC | 2 cut(s) | 239, 532 |
| TspGWI | ACGGA | 4 cut(s) | 69, 478, 627, 744 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 588 |
| XapI | RAATTY | 2 cut(s) | 9, 350 |
| XceI | RCATGY | 1 cut(s) | 565 |
| XhoI | CTCGAG | 1 cut(s) | 137 |
| XmnI | GAANNNNTTC | 1 cut(s) | 327 |
| XspI | CTAG | 4 cut(s) | 32, 144, 260, 678 |
| ZraI | GACGTC | 1 cut(s) | 580 |