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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 159 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 495 |
| AccB1I | GGYRCC | 2 cut(s) | 335, 649 |
| AccII | CGCG | 2 cut(s) | 435, 639 |
| AccIII | TCCGGA | 1 cut(s) | 415 |
| AciI | CCGC | 3 cut(s) | 127, 585, 740 |
| AclI | AACGTT | 1 cut(s) | 78 |
| AclWI | GGATC | 1 cut(s) | 717 |
| AcoI | YGGCCR | 1 cut(s) | 202 |
| AcuI | CTGAAG | 1 cut(s) | 690 |
| AcyI | GRCGYC | 2 cut(s) | 336, 650 |
| AfaI | GTAC | 1 cut(s) | 738 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 28, 517 |
| AflIII | ACRYGT | 2 cut(s) | 565, 733 |
| AgsI | TTSAA | 3 cut(s) | 142, 276, 633 |
| AjiI | CACGTC | 1 cut(s) | 542 |
| AluBI | AGCT | 3 cut(s) | 46, 170, 328 |
| AluI | AGCT | 3 cut(s) | 46, 170, 328 |
| Alw21I | GWGCWC | 2 cut(s) | 330, 547 |
| Alw26I | GTCTC | 3 cut(s) | 189, 262, 532 |
| Alw44I | GTGCAC | 1 cut(s) | 543 |
| AlwI | GGATC | 1 cut(s) | 717 |
| Aor13HI | TCCGGA | 1 cut(s) | 415 |
| AoxI | GGCC | 2 cut(s) | 202, 725 |
| ApaLI | GTGCAC | 1 cut(s) | 543 |
| ApeKI | GCWGC | 1 cut(s) | 64 |
| AspLEI | GCGC | 4 cut(s) | 338, 437, 641, 652 |
| AspS9I | GGNCC | 2 cut(s) | 488, 497 |
| AvaII | GGWCC | 2 cut(s) | 488, 497 |
| BaeGI | GKGCMC | 1 cut(s) | 547 |
| BalI | TGGCCA | 1 cut(s) | 204 |
| BanI | GGYRCC | 2 cut(s) | 335, 649 |
| BanII | GRGCYC | 1 cut(s) | 330 |
| BbsI | GAAGAC | 2 cut(s) | 39, 242 |
| Bbv12I | GWGCWC | 2 cut(s) | 330, 547 |
| BbvI | GCAGC | 1 cut(s) | 76 |
| BccI | CCATC | 3 cut(s) | 108, 184, 814 |
| BcoDI | GTCTC | 3 cut(s) | 189, 262, 532 |
| BfaI | CTAG | 1 cut(s) | 390 |
| BfmI | CTRYAG | 1 cut(s) | 427 |
| BfoI | RGCGCY | 2 cut(s) | 339, 653 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 647 |
| BisI | GCNGC | 1 cut(s) | 65 |
| BlsI | GCNGC | 1 cut(s) | 66 |
| Bme18I | GGWCC | 2 cut(s) | 488, 497 |
| BmgBI | CACGTC | 1 cut(s) | 542 |
| BmgT120I | GGNCC | 2 cut(s) | 488, 497 |
| BmiI | GGNNCC | 5 cut(s) | 337, 589, 651, 666, 677 |
| BpiI | GAAGAC | 2 cut(s) | 39, 242 |
| BpuEI | CTTGAG | 1 cut(s) | 80 |
| BsaBI | GATNNNNATC | 4 cut(s) | 227, 708, 824, 830 |
| BsaHI | GRCGYC | 2 cut(s) | 336, 650 |
| BsaJI | CCNNGG | 3 cut(s) | 396, 553, 598 |
| BsaWI | WCCGGW | 1 cut(s) | 415 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 28, 517 |
| Bse8I | GATNNNNATC | 4 cut(s) | 227, 708, 824, 830 |
| BseAI | TCCGGA | 1 cut(s) | 415 |
| BseDI | CCNNGG | 3 cut(s) | 396, 553, 598 |
| BseJI | GATNNNNATC | 4 cut(s) | 227, 708, 824, 830 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 28, 517 |
| BseSI | GKGCMC | 1 cut(s) | 547 |
| BseXI | GCAGC | 1 cut(s) | 76 |
| BsgI | GTGCAG | 1 cut(s) | 246 |
| Bsh1236I | CGCG | 2 cut(s) | 435, 639 |
| BshFI | GGCC | 2 cut(s) | 204, 727 |
| BshNI | GGYRCC | 2 cut(s) | 335, 649 |
| BsiHKAI | GWGCWC | 2 cut(s) | 330, 547 |
| BsiSI | CCGG | 1 cut(s) | 416 |
| BslFI | GGGAC | 1 cut(s) | 491 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 28, 517 |
| BsmAI | GTCTC | 3 cut(s) | 189, 262, 532 |
| BsmBI | CGTCTC | 1 cut(s) | 532 |
| BsmFI | GGGAC | 1 cut(s) | 491 |
| BsnI | GGCC | 2 cut(s) | 204, 727 |
| Bsp1286I | GDGCHC | 2 cut(s) | 330, 547 |
| Bsp13I | TCCGGA | 1 cut(s) | 415 |
| Bsp143I | GATC | 6 cut(s) | 228, 656, 709, 813, 825, 831 |
| Bsp19I | CCATGG | 1 cut(s) | 598 |
| BspACI | CCGC | 3 cut(s) | 127, 585, 740 |
| BspANI | GGCC | 2 cut(s) | 204, 727 |
| BspEI | TCCGGA | 1 cut(s) | 415 |
| BspFNI | CGCG | 2 cut(s) | 435, 639 |
| BspHI | TCATGA | 1 cut(s) | 322 |
| BspLI | GGNNCC | 5 cut(s) | 337, 589, 651, 666, 677 |
| BspPI | GGATC | 1 cut(s) | 717 |
| BspQI | GCTCTTC | 1 cut(s) | 177 |
| BspT107I | GGYRCC | 2 cut(s) | 335, 649 |
| BssECI | CCNNGG | 3 cut(s) | 396, 553, 598 |
| BssMI | GATC | 6 cut(s) | 228, 656, 709, 813, 825, 831 |
| BssNI | GRCGYC | 2 cut(s) | 336, 650 |
| BssT1I | CCWWGG | 1 cut(s) | 598 |
| Bst4CI | ACNGT | 2 cut(s) | 365, 554 |
| Bst6I | CTCTTC | 2 cut(s) | 177, 566 |
| BstACI | GRCGYC | 2 cut(s) | 336, 650 |
| BstDEI | CTNAG | 2 cut(s) | 405, 468 |
| BstDSI | CCRYGG | 3 cut(s) | 396, 553, 598 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 26 |
| BstFNI | CGCG | 2 cut(s) | 435, 639 |
| BstH2I | RGCGCY | 2 cut(s) | 339, 653 |
| BstHHI | GCGC | 4 cut(s) | 338, 437, 641, 652 |
| BstKTI | GATC | 6 cut(s) | 231, 659, 712, 816, 828, 834 |
| BstMAI | GTCTC | 3 cut(s) | 189, 262, 532 |
| BstMBI | GATC | 6 cut(s) | 228, 656, 709, 813, 825, 831 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 647, 790 |
| BstNSI | RCATGY | 1 cut(s) | 737 |
| BstSFI | CTRYAG | 1 cut(s) | 427 |
| BstSLI | GKGCMC | 1 cut(s) | 547 |
| BstUI | CGCG | 2 cut(s) | 435, 639 |
| BstV1I | GCAGC | 1 cut(s) | 76 |
| BstV2I | GAAGAC | 2 cut(s) | 39, 242 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 346 |
| BsuRI | GGCC | 2 cut(s) | 204, 727 |
| BtgI | CCRYGG | 3 cut(s) | 396, 553, 598 |
| BtgZI | GCGATG | 1 cut(s) | 127 |
| BtrI | CACGTC | 1 cut(s) | 542 |
| BtsIMutI | CAGTG | 1 cut(s) | 263 |
| CciI | TCATGA | 1 cut(s) | 322 |
| CfoI | GCGC | 4 cut(s) | 338, 437, 641, 652 |
| Cfr13I | GGNCC | 2 cut(s) | 488, 497 |
| CseI | GACGC | 2 cut(s) | 13, 56 |
| Csp6I | GTAC | 1 cut(s) | 737 |
| CviAII | CATG | 5 cut(s) | 323, 340, 599, 734, 801 |
| CviQI | GTAC | 1 cut(s) | 737 |
| DdeI | CTNAG | 2 cut(s) | 405, 468 |
| DinI | GGCGCC | 2 cut(s) | 337, 651 |
| DpnI | GATC | 6 cut(s) | 230, 658, 711, 815, 827, 833 |
| DpnII | GATC | 6 cut(s) | 228, 656, 709, 813, 825, 831 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 495 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 495 |
| EaeI | YGGCCR | 1 cut(s) | 202 |
| Eam1104I | CTCTTC | 2 cut(s) | 177, 566 |
| EarI | CTCTTC | 2 cut(s) | 177, 566 |
| EciI | GGCGGA | 1 cut(s) | 600 |
| Ecl136II | GAGCTC | 1 cut(s) | 328 |
| Eco130I | CCWWGG | 1 cut(s) | 598 |
| Eco24I | GRGCYC | 1 cut(s) | 330 |
| Eco47I | GGWCC | 2 cut(s) | 488, 497 |
| Eco53kI | GAGCTC | 1 cut(s) | 328 |
| Eco57I | CTGAAG | 1 cut(s) | 690 |
| EcoICRI | GAGCTC | 1 cut(s) | 328 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 26 |
| EcoT14I | CCWWGG | 1 cut(s) | 598 |
| EcoT38I | GRGCYC | 1 cut(s) | 330 |
| EgeI | GGCGCC | 2 cut(s) | 337, 651 |
| EheI | GGCGCC | 2 cut(s) | 337, 651 |
| ErhI | CCWWGG | 1 cut(s) | 598 |
| Esp3I | CGTCTC | 1 cut(s) | 532 |
| FaeI | CATG | 5 cut(s) | 326, 343, 602, 737, 804 |
| FaqI | GGGAC | 1 cut(s) | 491 |
| FatI | CATG | 5 cut(s) | 322, 339, 598, 733, 800 |
| FauNDI | CATATG | 1 cut(s) | 502 |
| Fnu4HI | GCNGC | 1 cut(s) | 65 |
| FriOI | GRGCYC | 1 cut(s) | 330 |
| Fsp4HI | GCNGC | 1 cut(s) | 65 |
| FspBI | CTAG | 1 cut(s) | 390 |
| GlaI | GCGC | 4 cut(s) | 337, 436, 640, 651 |
| GluI | GCNGC | 1 cut(s) | 65 |
| HaeII | RGCGCY | 2 cut(s) | 339, 653 |
| HaeIII | GGCC | 2 cut(s) | 204, 727 |
| HapII | CCGG | 1 cut(s) | 416 |
| HgaI | GACGC | 2 cut(s) | 13, 56 |
| HhaI | GCGC | 4 cut(s) | 338, 437, 641, 652 |
| Hin1I | GRCGYC | 2 cut(s) | 336, 650 |
| Hin1II | CATG | 5 cut(s) | 326, 343, 602, 737, 804 |
| Hin6I | GCGC | 4 cut(s) | 336, 435, 639, 650 |
| HinP1I | GCGC | 4 cut(s) | 336, 435, 639, 650 |
| HincII | GTYRAC | 1 cut(s) | 563 |
| HindII | GTYRAC | 1 cut(s) | 563 |
| HinfI | GANTC | 3 cut(s) | 86, 238, 419 |
| HpaII | CCGG | 1 cut(s) | 416 |
| Hpy166II | GTNNAC | 2 cut(s) | 545, 563 |
| Hpy188I | TCNGA | 3 cut(s) | 189, 288, 595 |
| Hpy188III | TCNNGA | 9 cut(s) | 83, 98, 232, 323, 416, 486, 778, 817, 829 |
| Hpy8I | GTNNAC | 2 cut(s) | 545, 563 |
| HpyAV | CCTTC | 4 cut(s) | 259, 501, 515, 665 |
| HpyCH4III | ACNGT | 2 cut(s) | 365, 554 |
| HpyCH4IV | ACGT | 6 cut(s) | 78, 307, 345, 541, 565, 772 |
| HpyCH4V | TGCA | 4 cut(s) | 263, 302, 545, 757 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 647, 790 |
| HpyF3I | CTNAG | 2 cut(s) | 405, 468 |
| HpySE526I | ACGT | 6 cut(s) | 78, 307, 345, 541, 565, 772 |
| Hsp92I | GRCGYC | 2 cut(s) | 336, 650 |
| Hsp92II | CATG | 5 cut(s) | 326, 343, 602, 737, 804 |
| HspAI | GCGC | 4 cut(s) | 336, 435, 639, 650 |
| KasI | GGCGCC | 2 cut(s) | 335, 649 |
| Kpn2I | TCCGGA | 1 cut(s) | 415 |
| Kzo9I | GATC | 6 cut(s) | 228, 656, 709, 813, 825, 831 |
| LguI | GCTCTTC | 1 cut(s) | 177 |
| LmnI | GCTCC | 5 cut(s) | 12, 457, 587, 664, 675 |
| LpnPI | CCDG | 8 cut(s) | 111, 267, 288, 429, 471, 480, 681, 760 |
| Lsp1109I | GCAGC | 1 cut(s) | 76 |
| MaeI | CTAG | 1 cut(s) | 390 |
| MaeII | ACGT | 6 cut(s) | 78, 307, 345, 541, 565, 772 |
| MaeIII | GTNAC | 2 cut(s) | 83, 605 |
| MalI | GATC | 6 cut(s) | 230, 658, 711, 815, 827, 833 |
| MboI | GATC | 6 cut(s) | 228, 656, 709, 813, 825, 831 |
| MboII | GAAGA | 6 cut(s) | 44, 164, 247, 388, 583, 823 |
| MhlI | GDGCHC | 2 cut(s) | 330, 547 |
| MlsI | TGGCCA | 1 cut(s) | 204 |
| MluCI | AATT | 3 cut(s) | 280, 481, 795 |
| MluNI | TGGCCA | 1 cut(s) | 204 |
| Mly113I | GGCGCC | 2 cut(s) | 336, 650 |
| MlyI | GAGTC | 3 cut(s) | 80, 232, 428 |
| MmeI | TCCRAC | 1 cut(s) | 618 |
| Mox20I | TGGCCA | 1 cut(s) | 204 |
| MroI | TCCGGA | 1 cut(s) | 415 |
| MscI | TGGCCA | 1 cut(s) | 204 |
| MseI | TTAA | 1 cut(s) | 180 |
| MslI | CAYNNNNRTG | 2 cut(s) | 344, 689 |
| Msp20I | TGGCCA | 1 cut(s) | 204 |
| MspI | CCGG | 1 cut(s) | 416 |
| MvnI | CGCG | 2 cut(s) | 435, 639 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 647, 790 |
| NarI | GGCGCC | 2 cut(s) | 336, 650 |
| NcoI | CCATGG | 1 cut(s) | 598 |
| NdeI | CATATG | 1 cut(s) | 502 |
| NdeII | GATC | 6 cut(s) | 228, 656, 709, 813, 825, 831 |
| NlaIII | CATG | 5 cut(s) | 326, 343, 602, 737, 804 |
| NlaIV | GGNNCC | 5 cut(s) | 337, 589, 651, 666, 677 |
| NmuCI | GTSAC | 1 cut(s) | 83 |
| NspI | RCATGY | 1 cut(s) | 737 |
| PagI | TCATGA | 1 cut(s) | 322 |
| PciI | ACATGT | 1 cut(s) | 733 |
| PciSI | GCTCTTC | 1 cut(s) | 177 |
| PkrI | GCNGC | 1 cut(s) | 66 |
| PleI | GAGTC | 3 cut(s) | 80, 232, 427 |
| PluTI | GGCGCC | 2 cut(s) | 339, 653 |
| PpsI | GAGTC | 3 cut(s) | 80, 232, 427 |
| PscI | ACATGT | 1 cut(s) | 733 |
| PsiI | TTATAA | 1 cut(s) | 159 |
| Psp124BI | GAGCTC | 1 cut(s) | 330 |
| Psp1406I | AACGTT | 1 cut(s) | 78 |
| PspN4I | GGNNCC | 5 cut(s) | 337, 589, 651, 666, 677 |
| PspPI | GGNCC | 2 cut(s) | 488, 497 |
| RsaI | GTAC | 1 cut(s) | 738 |
| RsaNI | GTAC | 1 cut(s) | 737 |
| RseI | CAYNNNNRTG | 2 cut(s) | 344, 689 |
| SacI | GAGCTC | 1 cut(s) | 330 |
| SapI | GCTCTTC | 1 cut(s) | 177 |
| SaqAI | TTAA | 1 cut(s) | 180 |
| SatI | GCNGC | 1 cut(s) | 65 |
| Sau3AI | GATC | 6 cut(s) | 228, 656, 709, 813, 825, 831 |
| Sau96I | GGNCC | 2 cut(s) | 488, 497 |
| SchI | GAGTC | 3 cut(s) | 80, 232, 428 |
| SduI | GDGCHC | 2 cut(s) | 330, 547 |
| SfcI | CTRYAG | 1 cut(s) | 427 |
| SfoI | GGCGCC | 2 cut(s) | 337, 651 |
| SinI | GGWCC | 2 cut(s) | 488, 497 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 344, 689 |
| SmlI | CTYRAG | 1 cut(s) | 59 |
| SmoI | CTYRAG | 1 cut(s) | 59 |
| Sse9I | AATT | 3 cut(s) | 280, 481, 795 |
| SsiI | CCGC | 3 cut(s) | 127, 585, 740 |
| SspDI | GGCGCC | 2 cut(s) | 335, 649 |
| SspMI | CTAG | 1 cut(s) | 390 |
| SstI | GAGCTC | 1 cut(s) | 330 |
| StyI | CCWWGG | 1 cut(s) | 598 |
| TaaI | ACNGT | 2 cut(s) | 365, 554 |
| TaiI | ACGT | 6 cut(s) | 81, 310, 348, 544, 568, 775 |
| TaqI | TCGA | 5 cut(s) | 164, 231, 655, 702, 830 |
| TasI | AATT | 3 cut(s) | 280, 481, 795 |
| Tru1I | TTAA | 1 cut(s) | 180 |
| Tru9I | TTAA | 1 cut(s) | 180 |
| TscAI | CASTG | 1 cut(s) | 270 |
| TseFI | GTSAC | 1 cut(s) | 83 |
| TseI | GCWGC | 1 cut(s) | 64 |
| Tsp45I | GTSAC | 1 cut(s) | 83 |
| TspDTI | ATGAA | 4 cut(s) | 30, 311, 356, 389 |
| TspRI | CASTG | 1 cut(s) | 270 |
| VneI | GTGCAC | 1 cut(s) | 543 |
| VpaK11BI | GGWCC | 2 cut(s) | 488, 497 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 26 |
| XceI | RCATGY | 1 cut(s) | 737 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 45 |
| XspI | CTAG | 1 cut(s) | 390 |