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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 121 |
| AciI | CCGC | 3 cut(s) | 282, 375, 657 |
| AclWI | GGATC | 1 cut(s) | 589 |
| AcoI | YGGCCR | 3 cut(s) | 221, 244, 267 |
| AcsI | RAATTY | 2 cut(s) | 272, 349 |
| AfaI | GTAC | 1 cut(s) | 544 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 293 |
| AgsI | TTSAA | 2 cut(s) | 293, 405 |
| AjiI | CACGTC | 5 cut(s) | 87, 111, 149, 173, 432 |
| AjnI | CCWGG | 2 cut(s) | 305, 425 |
| AlwI | GGATC | 1 cut(s) | 589 |
| Ama87I | CYCGRG | 1 cut(s) | 415 |
| AoxI | GGCC | 8 cut(s) | 60, 74, 221, 244, 267, 283, 389, 476 |
| ApoI | RAATTY | 2 cut(s) | 272, 349 |
| AspS9I | GGNCC | 5 cut(s) | 61, 75, 98, 160, 284 |
| AsuC2I | CCSGG | 1 cut(s) | 279 |
| AvaI | CYCGRG | 1 cut(s) | 415 |
| AvaII | GGWCC | 2 cut(s) | 98, 160 |
| BanI | GGYRCC | 1 cut(s) | 121 |
| BbsI | GAAGAC | 1 cut(s) | 569 |
| BccI | CCATC | 4 cut(s) | 386, 388, 511, 638 |
| BciT130I | CCWGG | 2 cut(s) | 307, 427 |
| BcnI | CCSGG | 1 cut(s) | 279 |
| BfaI | CTAG | 2 cut(s) | 422, 634 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 484 |
| BisI | GCNGC | 1 cut(s) | 283 |
| BlsI | GCNGC | 1 cut(s) | 284 |
| Bme1390I | CCNGG | 3 cut(s) | 279, 307, 427 |
| Bme18I | GGWCC | 2 cut(s) | 98, 160 |
| BmeT110I | CYCGRG | 1 cut(s) | 415 |
| BmgBI | CACGTC | 5 cut(s) | 87, 111, 149, 173, 432 |
| BmgT120I | GGNCC | 5 cut(s) | 61, 75, 98, 160, 284 |
| BmiI | GGNNCC | 3 cut(s) | 100, 123, 162 |
| BmrFI | CCNGG | 3 cut(s) | 279, 307, 427 |
| BmrI | ACTGGG | 1 cut(s) | 188 |
| BmuI | ACTGGG | 1 cut(s) | 188 |
| BpiI | GAAGAC | 1 cut(s) | 569 |
| BpmI | CTGGAG | 1 cut(s) | 523 |
| BpuEI | CTTGAG | 1 cut(s) | 370 |
| BpuMI | CCSGG | 1 cut(s) | 279 |
| BsaJI | CCNNGG | 1 cut(s) | 51 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 293 |
| Bse118I | RCCGGY | 1 cut(s) | 182 |
| Bse1I | ACTGG | 3 cut(s) | 194, 345, 540 |
| BseBI | CCWGG | 2 cut(s) | 307, 427 |
| BseDI | CCNNGG | 1 cut(s) | 51 |
| BseGI | GGATG | 3 cut(s) | 175, 302, 506 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 293 |
| BseMII | CTCAG | 1 cut(s) | 466 |
| BseNI | ACTGG | 3 cut(s) | 194, 345, 540 |
| BshFI | GGCC | 8 cut(s) | 62, 76, 223, 246, 269, 285, 391, 478 |
| BshNI | GGYRCC | 1 cut(s) | 121 |
| BsiHKCI | CYCGRG | 1 cut(s) | 415 |
| BsiSI | CCGG | 5 cut(s) | 183, 243, 253, 266, 279 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 293 |
| BsnI | GGCC | 8 cut(s) | 62, 76, 223, 246, 269, 285, 391, 478 |
| BsoBI | CYCGRG | 1 cut(s) | 415 |
| Bsp143I | GATC | 1 cut(s) | 581 |
| Bsp19I | CCATGG | 1 cut(s) | 51 |
| BspACI | CCGC | 3 cut(s) | 282, 375, 657 |
| BspANI | GGCC | 8 cut(s) | 62, 76, 223, 246, 269, 285, 391, 478 |
| BspCNI | CTCAG | 1 cut(s) | 465 |
| BspLI | GGNNCC | 3 cut(s) | 100, 123, 162 |
| BspPI | GGATC | 1 cut(s) | 589 |
| BspT107I | GGYRCC | 1 cut(s) | 121 |
| BsrFI | RCCGGY | 1 cut(s) | 182 |
| BsrI | ACTGG | 3 cut(s) | 194, 345, 540 |
| BssAI | RCCGGY | 1 cut(s) | 182 |
| BssECI | CCNNGG | 1 cut(s) | 51 |
| BssMI | GATC | 1 cut(s) | 581 |
| BssT1I | CCWWGG | 1 cut(s) | 51 |
| Bst2UI | CCWGG | 2 cut(s) | 307, 427 |
| Bst4CI | ACNGT | 1 cut(s) | 441 |
| BstC8I | GCNNGC | 1 cut(s) | 74 |
| BstDEI | CTNAG | 2 cut(s) | 452, 480 |
| BstDSI | CCRYGG | 1 cut(s) | 51 |
| BstF5I | GGATG | 3 cut(s) | 175, 302, 506 |
| BstKTI | GATC | 1 cut(s) | 584 |
| BstMBI | GATC | 1 cut(s) | 581 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 34, 113, 151, 463, 484, 493 |
| BstNI | CCWGG | 2 cut(s) | 307, 427 |
| BstSCI | CCNGG | 3 cut(s) | 277, 305, 425 |
| BstV2I | GAAGAC | 1 cut(s) | 569 |
| BstX2I | RGATCY | 1 cut(s) | 581 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 52 |
| BstYI | RGATCY | 1 cut(s) | 581 |
| BsuRI | GGCC | 8 cut(s) | 62, 76, 223, 246, 269, 285, 391, 478 |
| BtgI | CCRYGG | 1 cut(s) | 51 |
| BtrI | CACGTC | 5 cut(s) | 87, 111, 149, 173, 432 |
| BtsCI | GGATG | 3 cut(s) | 175, 302, 506 |
| BtsI | GCAGTG | 3 cut(s) | 102, 140, 164 |
| BtsIMutI | CAGTG | 4 cut(s) | 64, 102, 140, 164 |
| Cac8I | GCNNGC | 1 cut(s) | 74 |
| Cfr10I | RCCGGY | 1 cut(s) | 182 |
| Cfr13I | GGNCC | 5 cut(s) | 61, 75, 98, 160, 284 |
| CseI | GACGC | 1 cut(s) | 78 |
| Csp6I | GTAC | 1 cut(s) | 543 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 455, 490 |
| CviAII | CATG | 1 cut(s) | 52 |
| CviQI | GTAC | 1 cut(s) | 543 |
| DdeI | CTNAG | 2 cut(s) | 452, 480 |
| DpnI | GATC | 1 cut(s) | 583 |
| DpnII | GATC | 1 cut(s) | 581 |
| EaeI | YGGCCR | 3 cut(s) | 221, 244, 267 |
| EciI | GGCGGA | 1 cut(s) | 364 |
| Eco130I | CCWWGG | 1 cut(s) | 51 |
| Eco32I | GATATC | 1 cut(s) | 372 |
| Eco47I | GGWCC | 2 cut(s) | 98, 160 |
| Eco88I | CYCGRG | 1 cut(s) | 415 |
| EcoO109I | RGGNCCY | 2 cut(s) | 98, 160 |
| EcoRII | CCWGG | 2 cut(s) | 305, 425 |
| EcoRV | GATATC | 1 cut(s) | 372 |
| EcoT14I | CCWWGG | 1 cut(s) | 51 |
| ErhI | CCWWGG | 1 cut(s) | 51 |
| FaeI | CATG | 1 cut(s) | 55 |
| FaiI | YATR | 5 cut(s) | 53, 524, 526, 553, 650 |
| FatI | CATG | 1 cut(s) | 51 |
| FauNDI | CATATG | 1 cut(s) | 524 |
| Fnu4HI | GCNGC | 1 cut(s) | 283 |
| FokI | GGATG | 3 cut(s) | 162, 309, 493 |
| Fsp4HI | GCNGC | 1 cut(s) | 283 |
| FspBI | CTAG | 2 cut(s) | 422, 634 |
| GluI | GCNGC | 1 cut(s) | 283 |
| GsuI | CTGGAG | 1 cut(s) | 523 |
| HaeIII | GGCC | 8 cut(s) | 62, 76, 223, 246, 269, 285, 391, 478 |
| HapII | CCGG | 5 cut(s) | 183, 243, 253, 266, 279 |
| HgaI | GACGC | 1 cut(s) | 78 |
| Hin1II | CATG | 1 cut(s) | 55 |
| HincII | GTYRAC | 2 cut(s) | 188, 199 |
| HindII | GTYRAC | 2 cut(s) | 188, 199 |
| HinfI | GANTC | 5 cut(s) | 398, 411, 516, 532, 616 |
| HpaII | CCGG | 5 cut(s) | 183, 243, 253, 266, 279 |
| Hpy166II | GTNNAC | 2 cut(s) | 188, 199 |
| Hpy188I | TCNGA | 1 cut(s) | 348 |
| Hpy188III | TCNNGA | 4 cut(s) | 367, 402, 415, 628 |
| Hpy8I | GTNNAC | 2 cut(s) | 188, 199 |
| HpyAV | CCTTC | 2 cut(s) | 151, 566 |
| HpyCH4III | ACNGT | 1 cut(s) | 441 |
| HpyCH4IV | ACGT | 6 cut(s) | 86, 110, 148, 172, 431, 608 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 34, 113, 151, 463, 484, 493 |
| HpyF3I | CTNAG | 2 cut(s) | 452, 480 |
| HpySE526I | ACGT | 6 cut(s) | 86, 110, 148, 172, 431, 608 |
| Hsp92II | CATG | 1 cut(s) | 55 |
| Kzo9I | GATC | 1 cut(s) | 581 |
| LmnI | GCTCC | 2 cut(s) | 330, 542 |
| MaeI | CTAG | 2 cut(s) | 422, 634 |
| MaeII | ACGT | 6 cut(s) | 86, 110, 148, 172, 431, 608 |
| MaeIII | GTNAC | 1 cut(s) | 613 |
| MalI | GATC | 1 cut(s) | 583 |
| MboI | GATC | 1 cut(s) | 581 |
| MboII | GAAGA | 2 cut(s) | 571, 574 |
| MflI | RGATCY | 1 cut(s) | 581 |
| MluCI | AATT | 3 cut(s) | 272, 313, 349 |
| MlyI | GAGTC | 2 cut(s) | 510, 610 |
| MnlI | CCTC | 5 cut(s) | 52, 89, 477, 522, 664 |
| MslI | CAYNNNNRTG | 1 cut(s) | 511 |
| MspI | CCGG | 5 cut(s) | 183, 243, 253, 266, 279 |
| MspR9I | CCNGG | 3 cut(s) | 279, 307, 427 |
| MvaI | CCWGG | 2 cut(s) | 307, 427 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 34, 113, 151, 463, 484, 493 |
| NciI | CCSGG | 1 cut(s) | 279 |
| NcoI | CCATGG | 1 cut(s) | 51 |
| NdeI | CATATG | 1 cut(s) | 524 |
| NdeII | GATC | 1 cut(s) | 581 |
| NlaIII | CATG | 1 cut(s) | 55 |
| NlaIV | GGNNCC | 3 cut(s) | 100, 123, 162 |
| NmuCI | GTSAC | 1 cut(s) | 613 |
| PaeR7I | CTCGAG | 1 cut(s) | 415 |
| PfeI | GAWTC | 3 cut(s) | 398, 411, 532 |
| PkrI | GCNGC | 1 cut(s) | 284 |
| PleI | GAGTC | 2 cut(s) | 510, 610 |
| PpsI | GAGTC | 2 cut(s) | 510, 610 |
| PpuMI | RGGWCCY | 2 cut(s) | 98, 160 |
| Psp5II | RGGWCCY | 2 cut(s) | 98, 160 |
| Psp6I | CCWGG | 2 cut(s) | 305, 425 |
| PspGI | CCWGG | 2 cut(s) | 305, 425 |
| PspN4I | GGNNCC | 3 cut(s) | 100, 123, 162 |
| PspPI | GGNCC | 5 cut(s) | 61, 75, 98, 160, 284 |
| PspPPI | RGGWCCY | 2 cut(s) | 98, 160 |
| PsuI | RGATCY | 1 cut(s) | 581 |
| RsaI | GTAC | 1 cut(s) | 544 |
| RsaNI | GTAC | 1 cut(s) | 543 |
| RseI | CAYNNNNRTG | 1 cut(s) | 511 |
| SatI | GCNGC | 1 cut(s) | 283 |
| Sau3AI | GATC | 1 cut(s) | 581 |
| Sau96I | GGNCC | 5 cut(s) | 61, 75, 98, 160, 284 |
| SchI | GAGTC | 2 cut(s) | 510, 610 |
| ScrFI | CCNGG | 3 cut(s) | 279, 307, 427 |
| SetI | ASST | 8 cut(s) | 89, 113, 151, 175, 361, 434, 611, 635 |
| Sfr274I | CTCGAG | 1 cut(s) | 415 |
| SinI | GGWCC | 2 cut(s) | 98, 160 |
| SlaI | CTCGAG | 1 cut(s) | 415 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 511 |
| SmlI | CTYRAG | 2 cut(s) | 385, 415 |
| SmoI | CTYRAG | 2 cut(s) | 385, 415 |
| Sse9I | AATT | 3 cut(s) | 272, 313, 349 |
| SsiI | CCGC | 3 cut(s) | 282, 375, 657 |
| SspMI | CTAG | 2 cut(s) | 422, 634 |
| StyD4I | CCNGG | 3 cut(s) | 277, 305, 425 |
| StyI | CCWWGG | 1 cut(s) | 51 |
| TaaI | ACNGT | 1 cut(s) | 441 |
| TaiI | ACGT | 6 cut(s) | 89, 113, 151, 175, 434, 611 |
| TaqI | TCGA | 1 cut(s) | 416 |
| TasI | AATT | 3 cut(s) | 272, 313, 349 |
| TauI | GCSGC | 1 cut(s) | 285 |
| TfiI | GAWTC | 3 cut(s) | 398, 411, 532 |
| TscAI | CASTG | 4 cut(s) | 71, 109, 147, 171 |
| TseFI | GTSAC | 1 cut(s) | 613 |
| Tsp45I | GTSAC | 1 cut(s) | 613 |
| TspDTI | ATGAA | 1 cut(s) | 572 |
| TspGWI | ACGGA | 1 cut(s) | 601 |
| TspRI | CASTG | 4 cut(s) | 71, 109, 147, 171 |
| VpaK11BI | GGWCC | 2 cut(s) | 98, 160 |
| XapI | RAATTY | 2 cut(s) | 272, 349 |
| XhoI | CTCGAG | 1 cut(s) | 415 |
| XspI | CTAG | 2 cut(s) | 422, 634 |