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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 392, 473 |
| AciI | CCGC | 1 cut(s) | 396 |
| AcuI | CTGAAG | 1 cut(s) | 11 |
| AcyI | GRCGYC | 1 cut(s) | 474 |
| AfaI | GTAC | 1 cut(s) | 32 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 418, 422 |
| AgsI | TTSAA | 2 cut(s) | 160, 509 |
| AjnI | CCWGG | 1 cut(s) | 478 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 72, 104, 372, 404 |
| AluBI | AGCT | 2 cut(s) | 346, 356 |
| AluI | AGCT | 2 cut(s) | 346, 356 |
| Alw26I | GTCTC | 2 cut(s) | 76, 280 |
| AoxI | GGCC | 1 cut(s) | 530 |
| AspA2I | CCTAGG | 1 cut(s) | 416 |
| AspLEI | GCGC | 1 cut(s) | 476 |
| AsuHPI | GGTGA | 3 cut(s) | 479, 487, 494 |
| AvrII | CCTAGG | 1 cut(s) | 416 |
| BanI | GGYRCC | 2 cut(s) | 392, 473 |
| BbsI | GAAGAC | 2 cut(s) | 57, 260 |
| BccI | CCATC | 4 cut(s) | 126, 280, 447, 464 |
| BceAI | ACGGC | 1 cut(s) | 77 |
| BciT130I | CCWGG | 1 cut(s) | 480 |
| BcoDI | GTCTC | 2 cut(s) | 76, 280 |
| BfaI | CTAG | 2 cut(s) | 122, 417 |
| BfoI | RGCGCY | 1 cut(s) | 477 |
| BlnI | CCTAGG | 1 cut(s) | 416 |
| Bme1390I | CCNGG | 1 cut(s) | 480 |
| BmiI | GGNNCC | 2 cut(s) | 394, 475 |
| BmrFI | CCNGG | 1 cut(s) | 480 |
| BmsI | GCATC | 1 cut(s) | 513 |
| BpiI | GAAGAC | 2 cut(s) | 57, 260 |
| Bpu10I | CCTNAGC | 1 cut(s) | 527 |
| BsaHI | GRCGYC | 1 cut(s) | 474 |
| BsaJI | CCNNGG | 4 cut(s) | 388, 416, 447, 478 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 418, 422 |
| BseBI | CCWGG | 1 cut(s) | 480 |
| BseDI | CCNNGG | 4 cut(s) | 388, 416, 447, 478 |
| BseGI | GGATG | 1 cut(s) | 384 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 418, 422 |
| BseMII | CTCAG | 2 cut(s) | 414, 541 |
| BshFI | GGCC | 1 cut(s) | 532 |
| BshNI | GGYRCC | 2 cut(s) | 392, 473 |
| BslFI | GGGAC | 1 cut(s) | 416 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 418, 422 |
| BsmAI | GTCTC | 2 cut(s) | 76, 280 |
| BsmBI | CGTCTC | 2 cut(s) | 76, 280 |
| BsmFI | GGGAC | 1 cut(s) | 416 |
| BsnI | GGCC | 1 cut(s) | 532 |
| Bsp143I | GATC | 1 cut(s) | 228 |
| Bsp19I | CCATGG | 1 cut(s) | 447 |
| BspACI | CCGC | 1 cut(s) | 396 |
| BspANI | GGCC | 1 cut(s) | 532 |
| BspCNI | CTCAG | 2 cut(s) | 413, 540 |
| BspHI | TCATGA | 1 cut(s) | 340 |
| BspLI | GGNNCC | 2 cut(s) | 394, 475 |
| BspT107I | GGYRCC | 2 cut(s) | 392, 473 |
| BssECI | CCNNGG | 4 cut(s) | 388, 416, 447, 478 |
| BssMI | GATC | 1 cut(s) | 228 |
| BssNI | GRCGYC | 1 cut(s) | 474 |
| BssT1I | CCWWGG | 3 cut(s) | 388, 416, 447 |
| Bst2UI | CCWGG | 1 cut(s) | 480 |
| BstACI | GRCGYC | 1 cut(s) | 474 |
| BstC8I | GCNNGC | 1 cut(s) | 424 |
| BstDEI | CTNAG | 3 cut(s) | 294, 400, 527 |
| BstDSI | CCRYGG | 1 cut(s) | 447 |
| BstF5I | GGATG | 1 cut(s) | 384 |
| BstH2I | RGCGCY | 1 cut(s) | 477 |
| BstHHI | GCGC | 1 cut(s) | 476 |
| BstKTI | GATC | 1 cut(s) | 231 |
| BstMAI | GTCTC | 2 cut(s) | 76, 280 |
| BstMBI | GATC | 1 cut(s) | 228 |
| BstNI | CCWGG | 1 cut(s) | 480 |
| BstSCI | CCNGG | 1 cut(s) | 478 |
| BstV2I | GAAGAC | 2 cut(s) | 57, 260 |
| BsuRI | GGCC | 1 cut(s) | 532 |
| BtgI | CCRYGG | 1 cut(s) | 447 |
| BtsCI | GGATG | 1 cut(s) | 384 |
| Cac8I | GCNNGC | 1 cut(s) | 424 |
| CciI | TCATGA | 1 cut(s) | 340 |
| CfoI | GCGC | 1 cut(s) | 476 |
| CseI | GACGC | 1 cut(s) | 58 |
| Csp6I | GTAC | 1 cut(s) | 31 |
| CviAII | CATG | 5 cut(s) | 101, 341, 377, 448, 464 |
| CviJI | RGCY | 7 cut(s) | 64, 141, 346, 356, 415, 422, 532 |
| CviKI_1 | RGCY | 7 cut(s) | 64, 141, 346, 356, 415, 422, 532 |
| CviQI | GTAC | 1 cut(s) | 31 |
| DdeI | CTNAG | 3 cut(s) | 294, 400, 527 |
| DinI | GGCGCC | 1 cut(s) | 475 |
| DpnI | GATC | 1 cut(s) | 230 |
| DpnII | GATC | 1 cut(s) | 228 |
| Eco130I | CCWWGG | 3 cut(s) | 388, 416, 447 |
| Eco147I | AGGCCT | 1 cut(s) | 532 |
| Eco57I | CTGAAG | 1 cut(s) | 11 |
| EcoRII | CCWGG | 1 cut(s) | 478 |
| EcoT14I | CCWWGG | 3 cut(s) | 388, 416, 447 |
| EgeI | GGCGCC | 1 cut(s) | 475 |
| EheI | GGCGCC | 1 cut(s) | 475 |
| ErhI | CCWWGG | 3 cut(s) | 388, 416, 447 |
| Esp3I | CGTCTC | 2 cut(s) | 76, 280 |
| FaeI | CATG | 5 cut(s) | 104, 344, 380, 451, 467 |
| FaqI | GGGAC | 1 cut(s) | 416 |
| FatI | CATG | 5 cut(s) | 100, 340, 376, 447, 463 |
| FauNDI | CATATG | 1 cut(s) | 12 |
| FokI | GGATG | 1 cut(s) | 371 |
| FspBI | CTAG | 2 cut(s) | 122, 417 |
| GlaI | GCGC | 1 cut(s) | 475 |
| HaeII | RGCGCY | 1 cut(s) | 477 |
| HaeIII | GGCC | 1 cut(s) | 532 |
| HgaI | GACGC | 1 cut(s) | 58 |
| HhaI | GCGC | 1 cut(s) | 476 |
| Hin1I | GRCGYC | 1 cut(s) | 474 |
| Hin1II | CATG | 5 cut(s) | 104, 344, 380, 451, 467 |
| Hin6I | GCGC | 1 cut(s) | 474 |
| HinP1I | GCGC | 1 cut(s) | 474 |
| HinfI | GANTC | 5 cut(s) | 4, 104, 256, 327, 456 |
| HphI | GGTGA | 3 cut(s) | 479, 487, 494 |
| Hpy166II | GTNNAC | 1 cut(s) | 406 |
| Hpy188I | TCNGA | 2 cut(s) | 184, 522 |
| Hpy188III | TCNNGA | 3 cut(s) | 116, 170, 341 |
| Hpy8I | GTNNAC | 1 cut(s) | 406 |
| HpyAV | CCTTC | 1 cut(s) | 470 |
| HpyCH4IV | ACGT | 1 cut(s) | 96 |
| HpyCH4V | TGCA | 3 cut(s) | 195, 320, 491 |
| HpyF3I | CTNAG | 3 cut(s) | 294, 400, 527 |
| HpySE526I | ACGT | 1 cut(s) | 96 |
| Hsp92I | GRCGYC | 1 cut(s) | 474 |
| Hsp92II | CATG | 5 cut(s) | 104, 344, 380, 451, 467 |
| HspAI | GCGC | 1 cut(s) | 474 |
| KasI | GGCGCC | 1 cut(s) | 473 |
| Kzo9I | GATC | 1 cut(s) | 228 |
| LmnI | GCTCC | 1 cut(s) | 353 |
| LpnPI | CCDG | 6 cut(s) | 70, 408, 425, 465, 492, 514 |
| LweI | GCATC | 1 cut(s) | 513 |
| MaeI | CTAG | 2 cut(s) | 122, 417 |
| MaeII | ACGT | 1 cut(s) | 96 |
| MaeIII | GTNAC | 2 cut(s) | 92, 313 |
| MalI | GATC | 1 cut(s) | 230 |
| MboI | GATC | 1 cut(s) | 228 |
| MboII | GAAGA | 3 cut(s) | 59, 62, 265 |
| MluCI | AATT | 3 cut(s) | 19, 212, 306 |
| Mly113I | GGCGCC | 1 cut(s) | 474 |
| MlyI | GAGTC | 3 cut(s) | 98, 250, 465 |
| MnlI | CCTC | 2 cut(s) | 152, 409 |
| MseI | TTAA | 2 cut(s) | 198, 206 |
| MslI | CAYNNNNRTG | 2 cut(s) | 150, 468 |
| MspR9I | CCNGG | 1 cut(s) | 480 |
| MvaI | CCWGG | 1 cut(s) | 480 |
| NarI | GGCGCC | 1 cut(s) | 474 |
| NcoI | CCATGG | 1 cut(s) | 447 |
| NdeI | CATATG | 1 cut(s) | 12 |
| NdeII | GATC | 1 cut(s) | 228 |
| NlaIII | CATG | 5 cut(s) | 104, 344, 380, 451, 467 |
| NlaIV | GGNNCC | 2 cut(s) | 394, 475 |
| PagI | TCATGA | 1 cut(s) | 340 |
| PceI | AGGCCT | 1 cut(s) | 532 |
| PfeI | GAWTC | 1 cut(s) | 327 |
| PleI | GAGTC | 3 cut(s) | 98, 250, 464 |
| PluTI | GGCGCC | 1 cut(s) | 477 |
| PpsI | GAGTC | 3 cut(s) | 98, 250, 464 |
| Psp6I | CCWGG | 1 cut(s) | 478 |
| PspGI | CCWGG | 1 cut(s) | 478 |
| PspN4I | GGNNCC | 2 cut(s) | 394, 475 |
| RsaI | GTAC | 1 cut(s) | 32 |
| RsaNI | GTAC | 1 cut(s) | 31 |
| RseI | CAYNNNNRTG | 2 cut(s) | 150, 468 |
| SaqAI | TTAA | 2 cut(s) | 198, 206 |
| Sau3AI | GATC | 1 cut(s) | 228 |
| SchI | GAGTC | 3 cut(s) | 98, 250, 465 |
| ScrFI | CCNGG | 1 cut(s) | 480 |
| SetI | ASST | 5 cut(s) | 99, 123, 348, 358, 484 |
| SfaNI | GCATC | 1 cut(s) | 513 |
| SfoI | GGCGCC | 1 cut(s) | 475 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 150, 468 |
| Sse9I | AATT | 3 cut(s) | 19, 212, 306 |
| SseBI | AGGCCT | 1 cut(s) | 532 |
| SsiI | CCGC | 1 cut(s) | 396 |
| SspDI | GGCGCC | 1 cut(s) | 473 |
| SspMI | CTAG | 2 cut(s) | 122, 417 |
| StuI | AGGCCT | 1 cut(s) | 532 |
| StyD4I | CCNGG | 1 cut(s) | 478 |
| StyI | CCWWGG | 3 cut(s) | 388, 416, 447 |
| TaiI | ACGT | 1 cut(s) | 99 |
| TaqI | TCGA | 2 cut(s) | 78, 304 |
| TasI | AATT | 3 cut(s) | 19, 212, 306 |
| TfiI | GAWTC | 1 cut(s) | 327 |
| Tru1I | TTAA | 2 cut(s) | 198, 206 |
| Tru9I | TTAA | 2 cut(s) | 198, 206 |
| TspDTI | ATGAA | 6 cut(s) | 56, 60, 329, 374, 393, 452 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 419 |
| XmaJI | CCTAGG | 1 cut(s) | 416 |
| XspI | CTAG | 2 cut(s) | 122, 417 |