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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 475 |
| AciI | CCGC | 7 cut(s) | 143, 146, 236, 242, 449, 598, 880 |
| AclWI | GGATC | 1 cut(s) | 1070 |
| AcoI | YGGCCR | 1 cut(s) | 243 |
| AcsI | RAATTY | 1 cut(s) | 947 |
| AfaI | GTAC | 1 cut(s) | 767 |
| AfeI | AGCGCT | 1 cut(s) | 127 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 142, 235, 455, 475 |
| AflII | CTTAAG | 1 cut(s) | 608 |
| AflIII | ACRYGT | 1 cut(s) | 579 |
| AgsI | TTSAA | 3 cut(s) | 383, 488, 895 |
| AjiI | CACGTC | 1 cut(s) | 655 |
| AjnI | CCWGG | 2 cut(s) | 624, 648 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 807, 839 |
| AluBI | AGCT | 3 cut(s) | 185, 253, 567 |
| AluI | AGCT | 3 cut(s) | 185, 253, 567 |
| Alw21I | GWGCWC | 1 cut(s) | 187 |
| Alw26I | GTCTC | 3 cut(s) | 43, 146, 811 |
| AlwI | GGATC | 1 cut(s) | 1070 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 208, 545 |
| Ama87I | CYCGRG | 1 cut(s) | 215 |
| Aor51HI | AGCGCT | 1 cut(s) | 127 |
| AoxI | GGCC | 2 cut(s) | 243, 612 |
| ApeKI | GCWGC | 1 cut(s) | 208 |
| ApoI | RAATTY | 1 cut(s) | 947 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 21, 53 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 924 |
| AspLEI | GCGC | 2 cut(s) | 128, 867 |
| AsuHPI | GGTGA | 1 cut(s) | 79 |
| AvaI | CYCGRG | 1 cut(s) | 215 |
| BanII | GRGCYC | 1 cut(s) | 187 |
| BbsI | GAAGAC | 3 cut(s) | 409, 792, 995 |
| Bbv12I | GWGCWC | 1 cut(s) | 187 |
| BbvI | GCAGC | 1 cut(s) | 195 |
| BccI | CCATC | 5 cut(s) | 191, 490, 611, 734, 1015 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1034, 1068 |
| BciT130I | CCWGG | 2 cut(s) | 626, 650 |
| BciVI | GTATCC | 1 cut(s) | 456 |
| BcoDI | GTCTC | 3 cut(s) | 43, 146, 811 |
| BfaI | CTAG | 5 cut(s) | 117, 510, 564, 645, 857 |
| BfmI | CTRYAG | 2 cut(s) | 161, 1053 |
| BfoI | RGCGCY | 1 cut(s) | 129 |
| BfrI | CTTAAG | 1 cut(s) | 608 |
| BfuI | GTATCC | 1 cut(s) | 456 |
| BisI | GCNGC | 3 cut(s) | 144, 209, 243 |
| BlsI | GCNGC | 3 cut(s) | 145, 210, 244 |
| Bme1390I | CCNGG | 2 cut(s) | 626, 650 |
| BmeT110I | CYCGRG | 1 cut(s) | 215 |
| BmgBI | CACGTC | 1 cut(s) | 655 |
| BmiI | GGNNCC | 2 cut(s) | 75, 279 |
| BmrFI | CCNGG | 2 cut(s) | 626, 650 |
| BmsI | GCATC | 1 cut(s) | 613 |
| BpiI | GAAGAC | 3 cut(s) | 409, 792, 995 |
| BpmI | CTGGAG | 2 cut(s) | 150, 746 |
| BpuEI | CTTGAG | 3 cut(s) | 275, 623, 660 |
| Bsa29I | ATCGAT | 1 cut(s) | 1044 |
| BsaI | GGTCTC | 1 cut(s) | 811 |
| BsaWI | WCCGGW | 1 cut(s) | 70 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 123, 153, 275, 305 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 142, 235, 455, 475 |
| Bse118I | RCCGGY | 1 cut(s) | 76 |
| Bse1I | ACTGG | 1 cut(s) | 763 |
| Bse3DI | GCAATG | 1 cut(s) | 981 |
| BseBI | CCWGG | 2 cut(s) | 626, 650 |
| BseCI | ATCGAT | 1 cut(s) | 1044 |
| BseGI | GGATG | 4 cut(s) | 51, 300, 313, 729 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 142, 235, 455, 475 |
| BseMI | GCAATG | 1 cut(s) | 981 |
| BseNI | ACTGG | 1 cut(s) | 763 |
| BseRI | GAGGAG | 2 cut(s) | 233, 410 |
| BseXI | GCAGC | 1 cut(s) | 195 |
| Bsh1285I | CGRYCG | 1 cut(s) | 27 |
| BshFI | GGCC | 2 cut(s) | 245, 614 |
| BshVI | ATCGAT | 1 cut(s) | 1044 |
| BsiEI | CGRYCG | 1 cut(s) | 27 |
| BsiHKAI | GWGCWC | 1 cut(s) | 187 |
| BsiHKCI | CYCGRG | 1 cut(s) | 215 |
| BsiSI | CCGG | 3 cut(s) | 71, 77, 281 |
| BslFI | GGGAC | 1 cut(s) | 995 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 142, 235, 455, 475 |
| BsmAI | GTCTC | 3 cut(s) | 43, 146, 811 |
| BsmFI | GGGAC | 1 cut(s) | 995 |
| BsmI | GAATGC | 2 cut(s) | 328, 370 |
| BsnI | GGCC | 2 cut(s) | 245, 614 |
| Bso31I | GGTCTC | 1 cut(s) | 811 |
| BsoBI | CYCGRG | 1 cut(s) | 215 |
| Bsp1286I | GDGCHC | 1 cut(s) | 187 |
| Bsp143I | GATC | 3 cut(s) | 91, 963, 1062 |
| BspACI | CCGC | 7 cut(s) | 143, 146, 236, 242, 449, 598, 880 |
| BspANI | GGCC | 2 cut(s) | 245, 614 |
| BspDI | ATCGAT | 1 cut(s) | 1044 |
| BspLI | GGNNCC | 2 cut(s) | 75, 279 |
| BspMAI | CTGCAG | 1 cut(s) | 1057 |
| BspPI | GGATC | 1 cut(s) | 1070 |
| BspQI | GCTCTTC | 1 cut(s) | 192 |
| BspTI | CTTAAG | 1 cut(s) | 608 |
| BspTNI | GGTCTC | 1 cut(s) | 811 |
| BsrDI | GCAATG | 1 cut(s) | 981 |
| BsrFI | RCCGGY | 1 cut(s) | 76 |
| BsrI | ACTGG | 1 cut(s) | 763 |
| BssAI | RCCGGY | 1 cut(s) | 76 |
| BssMI | GATC | 3 cut(s) | 91, 963, 1062 |
| Bst2UI | CCWGG | 2 cut(s) | 626, 650 |
| Bst4CI | ACNGT | 1 cut(s) | 37 |
| Bst6I | CTCTTC | 2 cut(s) | 25, 192 |
| BstAFI | CTTAAG | 1 cut(s) | 608 |
| BstC8I | GCNNGC | 4 cut(s) | 247, 251, 602, 869 |
| BstDEI | CTNAG | 1 cut(s) | 1029 |
| BstEII | GGTNACC | 1 cut(s) | 464 |
| BstF5I | GGATG | 4 cut(s) | 51, 300, 313, 729 |
| BstH2I | RGCGCY | 1 cut(s) | 129 |
| BstHHI | GCGC | 2 cut(s) | 128, 867 |
| BstKTI | GATC | 3 cut(s) | 94, 966, 1065 |
| BstMAI | GTCTC | 3 cut(s) | 43, 146, 811 |
| BstMBI | GATC | 3 cut(s) | 91, 963, 1062 |
| BstMCI | CGRYCG | 1 cut(s) | 27 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 242, 437, 695, 716, 873 |
| BstNI | CCWGG | 2 cut(s) | 626, 650 |
| BstNSI | RCATGY | 1 cut(s) | 583 |
| BstPI | GGTNACC | 1 cut(s) | 464 |
| BstSCI | CCNGG | 2 cut(s) | 624, 648 |
| BstSFI | CTRYAG | 2 cut(s) | 161, 1053 |
| BstV1I | GCAGC | 1 cut(s) | 195 |
| BstV2I | GAAGAC | 3 cut(s) | 409, 792, 995 |
| Bsu15I | ATCGAT | 1 cut(s) | 1044 |
| BsuI | GTATCC | 1 cut(s) | 456 |
| BsuRI | GGCC | 2 cut(s) | 245, 614 |
| BsuTUI | ATCGAT | 1 cut(s) | 1044 |
| BtrI | CACGTC | 1 cut(s) | 655 |
| BtsCI | GGATG | 4 cut(s) | 51, 300, 313, 729 |
| BtsIMutI | CAGTG | 1 cut(s) | 33 |
| Cac8I | GCNNGC | 4 cut(s) | 247, 251, 602, 869 |
| CaiI | CAGNNNCTG | 2 cut(s) | 208, 545 |
| CfoI | GCGC | 2 cut(s) | 128, 867 |
| Cfr10I | RCCGGY | 1 cut(s) | 76 |
| ClaI | ATCGAT | 1 cut(s) | 1044 |
| Csp6I | GTAC | 1 cut(s) | 766 |
| CviAII | CATG | 3 cut(s) | 230, 318, 580 |
| CviQI | GTAC | 1 cut(s) | 766 |
| DdeI | CTNAG | 1 cut(s) | 1029 |
| DpnI | GATC | 3 cut(s) | 93, 965, 1064 |
| DpnII | GATC | 3 cut(s) | 91, 963, 1062 |
| EaeI | YGGCCR | 1 cut(s) | 243 |
| Eam1104I | CTCTTC | 2 cut(s) | 25, 192 |
| EarI | CTCTTC | 2 cut(s) | 25, 192 |
| EciI | GGCGGA | 1 cut(s) | 587 |
| Ecl136II | GAGCTC | 1 cut(s) | 185 |
| Eco24I | GRGCYC | 1 cut(s) | 187 |
| Eco31I | GGTCTC | 1 cut(s) | 811 |
| Eco32I | GATATC | 1 cut(s) | 575 |
| Eco47III | AGCGCT | 1 cut(s) | 127 |
| Eco53kI | GAGCTC | 1 cut(s) | 185 |
| Eco88I | CYCGRG | 1 cut(s) | 215 |
| Eco91I | GGTNACC | 1 cut(s) | 464 |
| EcoICRI | GAGCTC | 1 cut(s) | 185 |
| EcoO65I | GGTNACC | 1 cut(s) | 464 |
| EcoRI | GAATTC | 1 cut(s) | 947 |
| EcoRII | CCWGG | 2 cut(s) | 624, 648 |
| EcoRV | GATATC | 1 cut(s) | 575 |
| EcoT38I | GRGCYC | 1 cut(s) | 187 |
| FaeI | CATG | 3 cut(s) | 233, 321, 583 |
| FaqI | GGGAC | 1 cut(s) | 995 |
| FatI | CATG | 3 cut(s) | 229, 317, 579 |
| FauNDI | CATATG | 1 cut(s) | 747 |
| Fnu4HI | GCNGC | 3 cut(s) | 144, 209, 243 |
| FokI | GGATG | 4 cut(s) | 38, 307, 320, 716 |
| FriOI | GRGCYC | 1 cut(s) | 187 |
| Fsp4HI | GCNGC | 3 cut(s) | 144, 209, 243 |
| FspBI | CTAG | 5 cut(s) | 117, 510, 564, 645, 857 |
| GlaI | GCGC | 2 cut(s) | 127, 866 |
| GluI | GCNGC | 3 cut(s) | 144, 209, 243 |
| GsuI | CTGGAG | 2 cut(s) | 150, 746 |
| HaeII | RGCGCY | 1 cut(s) | 129 |
| HaeIII | GGCC | 2 cut(s) | 245, 614 |
| HapII | CCGG | 3 cut(s) | 71, 77, 281 |
| HhaI | GCGC | 2 cut(s) | 128, 867 |
| Hin1II | CATG | 3 cut(s) | 233, 321, 583 |
| Hin6I | GCGC | 2 cut(s) | 126, 865 |
| HinP1I | GCGC | 2 cut(s) | 126, 865 |
| HinfI | GANTC | 7 cut(s) | 132, 542, 621, 634, 739, 839, 991 |
| HpaII | CCGG | 3 cut(s) | 71, 77, 281 |
| HphI | GGTGA | 1 cut(s) | 79 |
| Hpy188I | TCNGA | 5 cut(s) | 60, 137, 182, 541, 919 |
| Hpy188III | TCNNGA | 5 cut(s) | 271, 590, 677, 851, 905 |
| HpyAV | CCTTC | 3 cut(s) | 292, 789, 1012 |
| HpyCH4III | ACNGT | 1 cut(s) | 37 |
| HpyCH4IV | ACGT | 1 cut(s) | 654 |
| HpyCH4V | TGCA | 5 cut(s) | 440, 658, 974, 1016, 1055 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 242, 437, 695, 716, 873 |
| HpyF3I | CTNAG | 1 cut(s) | 1029 |
| HpySE526I | ACGT | 1 cut(s) | 654 |
| Hsp92II | CATG | 3 cut(s) | 233, 321, 583 |
| HspAI | GCGC | 2 cut(s) | 126, 865 |
| Kzo9I | GATC | 3 cut(s) | 91, 963, 1062 |
| LguI | GCTCTTC | 1 cut(s) | 192 |
| LmnI | GCTCC | 5 cut(s) | 73, 123, 182, 277, 765 |
| Lsp1109I | GCAGC | 1 cut(s) | 195 |
| LweI | GCATC | 1 cut(s) | 613 |
| MaeI | CTAG | 5 cut(s) | 117, 510, 564, 645, 857 |
| MaeII | ACGT | 1 cut(s) | 654 |
| MaeIII | GTNAC | 5 cut(s) | 271, 464, 524, 836, 1048 |
| MalI | GATC | 3 cut(s) | 93, 965, 1064 |
| MboI | GATC | 3 cut(s) | 91, 963, 1062 |
| MboII | GAAGA | 8 cut(s) | 12, 179, 409, 412, 794, 797, 827, 1000 |
| MhlI | GDGCHC | 1 cut(s) | 187 |
| MluCI | AATT | 3 cut(s) | 660, 754, 947 |
| MlyI | GAGTC | 5 cut(s) | 141, 536, 733, 833, 985 |
| MmeI | TCCRAC | 1 cut(s) | 101 |
| MroXI | GAANNNNTTC | 1 cut(s) | 924 |
| MseI | TTAA | 6 cut(s) | 288, 360, 410, 609, 933, 941 |
| MslI | CAYNNNNRTG | 2 cut(s) | 195, 734 |
| MspCI | CTTAAG | 1 cut(s) | 608 |
| MspI | CCGG | 3 cut(s) | 71, 77, 281 |
| MspR9I | CCNGG | 2 cut(s) | 626, 650 |
| Mva1269I | GAATGC | 2 cut(s) | 328, 370 |
| MvaI | CCWGG | 2 cut(s) | 626, 650 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 242, 437, 695, 716, 873 |
| NdeI | CATATG | 1 cut(s) | 747 |
| NdeII | GATC | 3 cut(s) | 91, 963, 1062 |
| NlaIII | CATG | 3 cut(s) | 233, 321, 583 |
| NlaIV | GGNNCC | 2 cut(s) | 75, 279 |
| NmuCI | GTSAC | 2 cut(s) | 271, 836 |
| NspI | RCATGY | 1 cut(s) | 583 |
| PaeR7I | CTCGAG | 1 cut(s) | 215 |
| PciI | ACATGT | 1 cut(s) | 579 |
| PciSI | GCTCTTC | 1 cut(s) | 192 |
| PctI | GAATGC | 2 cut(s) | 328, 370 |
| PdmI | GAANNNNTTC | 1 cut(s) | 924 |
| PfeI | GAWTC | 2 cut(s) | 621, 634 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 475 |
| PfoI | TCCNGGA | 1 cut(s) | 624 |
| PkrI | GCNGC | 3 cut(s) | 145, 210, 244 |
| PleI | GAGTC | 5 cut(s) | 140, 536, 733, 833, 985 |
| PpsI | GAGTC | 5 cut(s) | 140, 536, 733, 833, 985 |
| PscI | ACATGT | 1 cut(s) | 579 |
| Psp124BI | GAGCTC | 1 cut(s) | 187 |
| Psp6I | CCWGG | 2 cut(s) | 624, 648 |
| PspEI | GGTNACC | 1 cut(s) | 464 |
| PspGI | CCWGG | 2 cut(s) | 624, 648 |
| PspN4I | GGNNCC | 2 cut(s) | 75, 279 |
| PspXI | VCTCGAGB | 1 cut(s) | 215 |
| PstI | CTGCAG | 1 cut(s) | 1057 |
| PstNI | CAGNNNCTG | 2 cut(s) | 208, 545 |
| RsaI | GTAC | 1 cut(s) | 767 |
| RsaNI | GTAC | 1 cut(s) | 766 |
| RseI | CAYNNNNRTG | 2 cut(s) | 195, 734 |
| SacI | GAGCTC | 1 cut(s) | 187 |
| SapI | GCTCTTC | 1 cut(s) | 192 |
| SaqAI | TTAA | 6 cut(s) | 288, 360, 410, 609, 933, 941 |
| SatI | GCNGC | 3 cut(s) | 144, 209, 243 |
| Sau3AI | GATC | 3 cut(s) | 91, 963, 1062 |
| SchI | GAGTC | 5 cut(s) | 141, 536, 733, 833, 985 |
| ScrFI | CCNGG | 2 cut(s) | 626, 650 |
| SduI | GDGCHC | 1 cut(s) | 187 |
| SfaNI | GCATC | 1 cut(s) | 613 |
| SfcI | CTRYAG | 2 cut(s) | 161, 1053 |
| Sfr274I | CTCGAG | 1 cut(s) | 215 |
| SlaI | CTCGAG | 1 cut(s) | 215 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 195, 734 |
| SmlI | CTYRAG | 5 cut(s) | 215, 254, 608, 638, 675 |
| SmoI | CTYRAG | 5 cut(s) | 215, 254, 608, 638, 675 |
| Sse9I | AATT | 3 cut(s) | 660, 754, 947 |
| SsiI | CCGC | 7 cut(s) | 143, 146, 236, 242, 449, 598, 880 |
| SspMI | CTAG | 5 cut(s) | 117, 510, 564, 645, 857 |
| SstI | GAGCTC | 1 cut(s) | 187 |
| StyD4I | CCNGG | 2 cut(s) | 624, 648 |
| TaaI | ACNGT | 1 cut(s) | 37 |
| TaiI | ACGT | 1 cut(s) | 657 |
| TaqI | TCGA | 4 cut(s) | 23, 216, 813, 1044 |
| TaqII | GACCGA | 1 cut(s) | 41 |
| TasI | AATT | 3 cut(s) | 660, 754, 947 |
| TauI | GCSGC | 2 cut(s) | 146, 245 |
| TfiI | GAWTC | 2 cut(s) | 621, 634 |
| Tru1I | TTAA | 6 cut(s) | 288, 360, 410, 609, 933, 941 |
| Tru9I | TTAA | 6 cut(s) | 288, 360, 410, 609, 933, 941 |
| TscAI | CASTG | 1 cut(s) | 40 |
| TseFI | GTSAC | 2 cut(s) | 271, 836 |
| TseI | GCWGC | 1 cut(s) | 208 |
| Tsp45I | GTSAC | 2 cut(s) | 271, 836 |
| TspDTI | ATGAA | 6 cut(s) | 179, 306, 311, 540, 791, 795 |
| TspGWI | ACGGA | 3 cut(s) | 290, 824, 875 |
| TspRI | CASTG | 1 cut(s) | 40 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 475 |
| Vha464I | CTTAAG | 1 cut(s) | 608 |
| XapI | RAATTY | 1 cut(s) | 947 |
| XceI | RCATGY | 1 cut(s) | 583 |
| XhoI | CTCGAG | 1 cut(s) | 215 |
| XmnI | GAANNNNTTC | 1 cut(s) | 924 |
| XspI | CTAG | 5 cut(s) | 117, 510, 564, 645, 857 |