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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 441, 486 |
| Acc36I | ACCTGC | 1 cut(s) | 189 |
| Acc65I | GGTACC | 1 cut(s) | 516 |
| AccB1I | GGYRCC | 1 cut(s) | 516 |
| AccBSI | CCGCTC | 1 cut(s) | 514 |
| AciI | CCGC | 2 cut(s) | 514, 583 |
| AclWI | GGATC | 1 cut(s) | 374 |
| AcuI | CTGAAG | 2 cut(s) | 369, 753 |
| AcvI | CACGTG | 1 cut(s) | 623 |
| AcyI | GRCGYC | 1 cut(s) | 46 |
| AdeI | CACNNNGTG | 1 cut(s) | 608 |
| AfaI | GTAC | 4 cut(s) | 346, 460, 518, 671 |
| AfeI | AGCGCT | 1 cut(s) | 125 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 500, 501, 527, 571, 624 |
| AflIII | ACRYGT | 2 cut(s) | 602, 620 |
| AgsI | TTSAA | 7 cut(s) | 163, 170, 199, 212, 222, 447, 727 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 266 |
| AjnI | CCWGG | 1 cut(s) | 570 |
| AluBI | AGCT | 6 cut(s) | 103, 227, 283, 385, 407, 731 |
| AluI | AGCT | 6 cut(s) | 103, 227, 283, 385, 407, 731 |
| Alw21I | GWGCWC | 1 cut(s) | 747 |
| Alw26I | GTCTC | 1 cut(s) | 642 |
| Alw44I | GTGCAC | 1 cut(s) | 743 |
| AlwI | GGATC | 1 cut(s) | 374 |
| Aor51HI | AGCGCT | 1 cut(s) | 125 |
| AoxI | GGCC | 2 cut(s) | 449, 550 |
| ApaI | GGGCCC | 1 cut(s) | 554 |
| ApaLI | GTGCAC | 1 cut(s) | 743 |
| ApeKI | GCWGC | 1 cut(s) | 755 |
| Asp718I | GGTACC | 1 cut(s) | 516 |
| AspLEI | GCGC | 3 cut(s) | 126, 186, 507 |
| AspS9I | GGNCC | 3 cut(s) | 450, 550, 551 |
| AsuHPI | GGTGA | 2 cut(s) | 490, 703 |
| BaeGI | GKGCMC | 2 cut(s) | 554, 747 |
| BanI | GGYRCC | 1 cut(s) | 516 |
| BanII | GRGCYC | 1 cut(s) | 554 |
| BauI | CACGAG | 2 cut(s) | 370, 428 |
| BbrPI | CACGTG | 1 cut(s) | 623 |
| Bbv12I | GWGCWC | 1 cut(s) | 747 |
| BbvI | GCAGC | 1 cut(s) | 767 |
| BccI | CCATC | 1 cut(s) | 686 |
| BciT130I | CCWGG | 1 cut(s) | 572 |
| BciVI | GTATCC | 1 cut(s) | 592 |
| BcoDI | GTCTC | 1 cut(s) | 642 |
| BfaI | CTAG | 1 cut(s) | 116 |
| BfmI | CTRYAG | 1 cut(s) | 402 |
| BfoI | RGCGCY | 1 cut(s) | 127 |
| BfuAI | ACCTGC | 1 cut(s) | 189 |
| BfuI | GTATCC | 1 cut(s) | 592 |
| BisI | GCNGC | 1 cut(s) | 756 |
| BlsI | GCNGC | 1 cut(s) | 757 |
| Bme1390I | CCNGG | 1 cut(s) | 572 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 266 |
| BmgT120I | GGNCC | 3 cut(s) | 450, 550, 551 |
| BmiI | GGNNCC | 2 cut(s) | 518, 552 |
| BmrFI | CCNGG | 1 cut(s) | 572 |
| BmsI | GCATC | 2 cut(s) | 30, 742 |
| BpuEI | CTTGAG | 1 cut(s) | 9 |
| BsaAI | YACGTR | 2 cut(s) | 605, 623 |
| BsaBI | GATNNNNATC | 1 cut(s) | 705 |
| BsaHI | GRCGYC | 1 cut(s) | 46 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 65, 95 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 500, 501, 527, 571, 624 |
| Bse3DI | GCAATG | 1 cut(s) | 139 |
| Bse8I | GATNNNNATC | 1 cut(s) | 705 |
| BseBI | CCWGG | 1 cut(s) | 572 |
| BseGI | GGATG | 1 cut(s) | 757 |
| BseJI | GATNNNNATC | 1 cut(s) | 705 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 500, 501, 527, 571, 624 |
| BseMI | GCAATG | 1 cut(s) | 139 |
| BseMII | CTCAG | 1 cut(s) | 399 |
| BseSI | GKGCMC | 2 cut(s) | 554, 747 |
| BseXI | GCAGC | 1 cut(s) | 767 |
| BshFI | GGCC | 2 cut(s) | 451, 552 |
| BshNI | GGYRCC | 1 cut(s) | 516 |
| BsiHKAI | GWGCWC | 1 cut(s) | 747 |
| BslFI | GGGAC | 2 cut(s) | 546, 555 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 500, 501, 527, 571, 624 |
| BsmAI | GTCTC | 1 cut(s) | 642 |
| BsmFI | GGGAC | 2 cut(s) | 546, 555 |
| BsmI | GAATGC | 2 cut(s) | 62, 97 |
| BsnI | GGCC | 2 cut(s) | 451, 552 |
| Bsp120I | GGGCCC | 1 cut(s) | 550 |
| Bsp1286I | GDGCHC | 2 cut(s) | 554, 747 |
| Bsp143I | GATC | 2 cut(s) | 84, 366 |
| BspACI | CCGC | 2 cut(s) | 514, 583 |
| BspANI | GGCC | 2 cut(s) | 451, 552 |
| BspCNI | CTCAG | 1 cut(s) | 400 |
| BspHI | TCATGA | 1 cut(s) | 472 |
| BspLI | GGNNCC | 2 cut(s) | 518, 552 |
| BspMI | ACCTGC | 1 cut(s) | 189 |
| BspPI | GGATC | 1 cut(s) | 374 |
| BspQI | GCTCTTC | 2 cut(s) | 114, 234 |
| BspT107I | GGYRCC | 1 cut(s) | 516 |
| BsrBI | CCGCTC | 1 cut(s) | 514 |
| BsrDI | GCAATG | 1 cut(s) | 139 |
| BssMI | GATC | 2 cut(s) | 84, 366 |
| BssNI | GRCGYC | 1 cut(s) | 46 |
| BssSI | CACGAG | 2 cut(s) | 370, 428 |
| Bst2BI | CACGAG | 2 cut(s) | 370, 428 |
| Bst2UI | CCWGG | 1 cut(s) | 572 |
| Bst4CI | ACNGT | 2 cut(s) | 240, 344 |
| Bst6I | CTCTTC | 2 cut(s) | 114, 234 |
| BstACI | GRCGYC | 1 cut(s) | 46 |
| BstBAI | YACGTR | 2 cut(s) | 605, 623 |
| BstC8I | GCNNGC | 1 cut(s) | 21 |
| BstDEI | CTNAG | 3 cut(s) | 408, 462, 522 |
| BstF5I | GGATG | 1 cut(s) | 757 |
| BstH2I | RGCGCY | 1 cut(s) | 127 |
| BstHHI | GCGC | 3 cut(s) | 126, 186, 507 |
| BstKTI | GATC | 2 cut(s) | 87, 369 |
| BstMAI | GTCTC | 1 cut(s) | 642 |
| BstMBI | GATC | 2 cut(s) | 84, 366 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 121, 511 |
| BstNI | CCWGG | 1 cut(s) | 572 |
| BstNSI | RCATGY | 1 cut(s) | 23 |
| BstSCI | CCNGG | 1 cut(s) | 570 |
| BstSFI | CTRYAG | 1 cut(s) | 402 |
| BstSLI | GKGCMC | 2 cut(s) | 554, 747 |
| BstV1I | GCAGC | 1 cut(s) | 767 |
| BsuI | GTATCC | 1 cut(s) | 592 |
| BsuRI | GGCC | 2 cut(s) | 451, 552 |
| BtsCI | GGATG | 1 cut(s) | 757 |
| BveI | ACCTGC | 1 cut(s) | 189 |
| Cac8I | GCNNGC | 1 cut(s) | 21 |
| CciI | TCATGA | 1 cut(s) | 472 |
| CfoI | GCGC | 3 cut(s) | 126, 186, 507 |
| Cfr13I | GGNCC | 3 cut(s) | 450, 550, 551 |
| CseI | GACGC | 1 cut(s) | 54 |
| Csp6I | GTAC | 4 cut(s) | 345, 459, 517, 670 |
| CviAII | CATG | 5 cut(s) | 20, 416, 473, 536, 652 |
| CviJI | RGCY | 9 cut(s) | 103, 227, 283, 320, 385, 407, 451, 552, 731 |
| CviKI_1 | RGCY | 9 cut(s) | 103, 227, 283, 320, 385, 407, 451, 552, 731 |
| CviQI | GTAC | 4 cut(s) | 345, 459, 517, 670 |
| DdeI | CTNAG | 3 cut(s) | 408, 462, 522 |
| DpnI | GATC | 2 cut(s) | 86, 368 |
| DpnII | GATC | 2 cut(s) | 84, 366 |
| DraIII | CACNNNGTG | 1 cut(s) | 608 |
| DriI | GACNNNNNGTC | 1 cut(s) | 266 |
| Eam1104I | CTCTTC | 2 cut(s) | 114, 234 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 266 |
| EarI | CTCTTC | 2 cut(s) | 114, 234 |
| Eco24I | GRGCYC | 1 cut(s) | 554 |
| Eco47III | AGCGCT | 1 cut(s) | 125 |
| Eco57I | CTGAAG | 2 cut(s) | 369, 753 |
| Eco72I | CACGTG | 1 cut(s) | 623 |
| EcoRII | CCWGG | 1 cut(s) | 570 |
| EcoT38I | GRGCYC | 1 cut(s) | 554 |
| FaeI | CATG | 5 cut(s) | 23, 419, 476, 539, 655 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 657, 689 |
| FaqI | GGGAC | 2 cut(s) | 546, 555 |
| FatI | CATG | 5 cut(s) | 19, 415, 472, 535, 651 |
| FauNDI | CATATG | 1 cut(s) | 51 |
| Fnu4HI | GCNGC | 1 cut(s) | 756 |
| FokI | GGATG | 1 cut(s) | 764 |
| FriOI | GRGCYC | 1 cut(s) | 554 |
| Fsp4HI | GCNGC | 1 cut(s) | 756 |
| FspBI | CTAG | 1 cut(s) | 116 |
| GlaI | GCGC | 3 cut(s) | 125, 185, 506 |
| GluI | GCNGC | 1 cut(s) | 756 |
| HaeII | RGCGCY | 1 cut(s) | 127 |
| HaeIII | GGCC | 2 cut(s) | 451, 552 |
| HgaI | GACGC | 1 cut(s) | 54 |
| HhaI | GCGC | 3 cut(s) | 126, 186, 507 |
| Hin1I | GRCGYC | 1 cut(s) | 46 |
| Hin1II | CATG | 5 cut(s) | 23, 419, 476, 539, 655 |
| Hin6I | GCGC | 3 cut(s) | 124, 184, 505 |
| HinP1I | GCGC | 3 cut(s) | 124, 184, 505 |
| HinfI | GANTC | 2 cut(s) | 143, 632 |
| HphI | GGTGA | 2 cut(s) | 490, 703 |
| Hpy166II | GTNNAC | 3 cut(s) | 260, 670, 745 |
| Hpy188I | TCNGA | 1 cut(s) | 68 |
| Hpy188III | TCNNGA | 5 cut(s) | 37, 88, 370, 430, 473 |
| Hpy8I | GTNNAC | 3 cut(s) | 260, 670, 745 |
| Hpy99I | CGWCG | 1 cut(s) | 48 |
| HpyAV | CCTTC | 4 cut(s) | 157, 157, 316, 569 |
| HpyCH4III | ACNGT | 2 cut(s) | 240, 344 |
| HpyCH4IV | ACGT | 3 cut(s) | 544, 604, 622 |
| HpyCH4V | TGCA | 6 cut(s) | 95, 132, 491, 677, 745, 755 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 121, 511 |
| HpyF3I | CTNAG | 3 cut(s) | 408, 462, 522 |
| HpySE526I | ACGT | 3 cut(s) | 544, 604, 622 |
| Hsp92I | GRCGYC | 1 cut(s) | 46 |
| Hsp92II | CATG | 5 cut(s) | 23, 419, 476, 539, 655 |
| HspAI | GCGC | 3 cut(s) | 124, 184, 505 |
| KpnI | GGTACC | 1 cut(s) | 520 |
| Kzo9I | GATC | 2 cut(s) | 84, 366 |
| LguI | GCTCTTC | 2 cut(s) | 114, 234 |
| LmnI | GCTCC | 1 cut(s) | 511 |
| LpnPI | CCDG | 6 cut(s) | 168, 194, 279, 345, 557, 584 |
| Lsp1109I | GCAGC | 1 cut(s) | 767 |
| LweI | GCATC | 2 cut(s) | 30, 742 |
| MaeI | CTAG | 1 cut(s) | 116 |
| MaeII | ACGT | 3 cut(s) | 544, 604, 622 |
| MaeIII | GTNAC | 1 cut(s) | 268 |
| MalI | GATC | 2 cut(s) | 86, 368 |
| MbiI | CCGCTC | 1 cut(s) | 514 |
| MboI | GATC | 2 cut(s) | 84, 366 |
| MboII | GAAGA | 7 cut(s) | 131, 221, 692, 695, 698, 701, 746 |
| MhlI | GDGCHC | 2 cut(s) | 554, 747 |
| MluCI | AATT | 5 cut(s) | 217, 285, 436, 442, 481 |
| MlyI | GAGTC | 1 cut(s) | 641 |
| MnlI | CCTC | 7 cut(s) | 161, 366, 426, 469, 494, 532, 712 |
| MseI | TTAA | 1 cut(s) | 332 |
| MslI | CAYNNNNRTG | 2 cut(s) | 428, 750 |
| MspR9I | CCNGG | 1 cut(s) | 572 |
| Mva1269I | GAATGC | 2 cut(s) | 62, 97 |
| MvaI | CCWGG | 1 cut(s) | 572 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 121, 511 |
| NdeI | CATATG | 1 cut(s) | 51 |
| NdeII | GATC | 2 cut(s) | 84, 366 |
| NlaIII | CATG | 5 cut(s) | 23, 419, 476, 539, 655 |
| NlaIV | GGNNCC | 2 cut(s) | 518, 552 |
| NmuCI | GTSAC | 1 cut(s) | 268 |
| NspI | RCATGY | 1 cut(s) | 23 |
| PaeI | GCATGC | 1 cut(s) | 23 |
| PagI | TCATGA | 1 cut(s) | 472 |
| PciSI | GCTCTTC | 2 cut(s) | 114, 234 |
| PctI | GAATGC | 2 cut(s) | 62, 97 |
| PfeI | GAWTC | 1 cut(s) | 143 |
| PkrI | GCNGC | 1 cut(s) | 757 |
| PleI | GAGTC | 1 cut(s) | 640 |
| PmaCI | CACGTG | 1 cut(s) | 623 |
| PmlI | CACGTG | 1 cut(s) | 623 |
| PpsI | GAGTC | 1 cut(s) | 640 |
| Ppu21I | YACGTR | 2 cut(s) | 605, 623 |
| PsiI | TTATAA | 2 cut(s) | 441, 486 |
| Psp6I | CCWGG | 1 cut(s) | 570 |
| PspCI | CACGTG | 1 cut(s) | 623 |
| PspGI | CCWGG | 1 cut(s) | 570 |
| PspN4I | GGNNCC | 2 cut(s) | 518, 552 |
| PspOMI | GGGCCC | 1 cut(s) | 550 |
| PspPI | GGNCC | 3 cut(s) | 450, 550, 551 |
| RsaI | GTAC | 4 cut(s) | 346, 460, 518, 671 |
| RsaNI | GTAC | 4 cut(s) | 345, 459, 517, 670 |
| RseI | CAYNNNNRTG | 2 cut(s) | 428, 750 |
| SapI | GCTCTTC | 2 cut(s) | 114, 234 |
| SaqAI | TTAA | 1 cut(s) | 332 |
| SatI | GCNGC | 1 cut(s) | 756 |
| Sau3AI | GATC | 2 cut(s) | 84, 366 |
| Sau96I | GGNCC | 3 cut(s) | 450, 550, 551 |
| SchI | GAGTC | 1 cut(s) | 641 |
| ScrFI | CCNGG | 1 cut(s) | 572 |
| SduI | GDGCHC | 2 cut(s) | 554, 747 |
| SfaNI | GCATC | 2 cut(s) | 30, 742 |
| SfcI | CTRYAG | 1 cut(s) | 402 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 428, 750 |
| SmlI | CTYRAG | 1 cut(s) | 24 |
| SmoI | CTYRAG | 1 cut(s) | 24 |
| SphI | GCATGC | 1 cut(s) | 23 |
| Sse9I | AATT | 5 cut(s) | 217, 285, 436, 442, 481 |
| SsiI | CCGC | 2 cut(s) | 514, 583 |
| SspI | AATATT | 1 cut(s) | 394 |
| SspMI | CTAG | 1 cut(s) | 116 |
| StyD4I | CCNGG | 1 cut(s) | 570 |
| TaaI | ACNGT | 2 cut(s) | 240, 344 |
| TaiI | ACGT | 3 cut(s) | 547, 607, 625 |
| TaqI | TCGA | 1 cut(s) | 83 |
| TasI | AATT | 5 cut(s) | 217, 285, 436, 442, 481 |
| TatI | WGTACW | 1 cut(s) | 344 |
| TfiI | GAWTC | 1 cut(s) | 143 |
| Tru1I | TTAA | 1 cut(s) | 332 |
| Tru9I | TTAA | 1 cut(s) | 332 |
| TseFI | GTSAC | 1 cut(s) | 268 |
| TseI | GCWGC | 1 cut(s) | 755 |
| Tsp45I | GTSAC | 1 cut(s) | 268 |
| TspDTI | ATGAA | 3 cut(s) | 368, 461, 753 |
| TspGWI | ACGGA | 2 cut(s) | 301, 379 |
| VneI | GTGCAC | 1 cut(s) | 743 |
| XceI | RCATGY | 1 cut(s) | 23 |
| XspI | CTAG | 1 cut(s) | 116 |