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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 513, 558 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 621 |
| AccB1I | GGYRCC | 4 cut(s) | 121, 680, 734, 755 |
| AccBSI | CCGCTC | 1 cut(s) | 586 |
| AciI | CCGC | 5 cut(s) | 375, 415, 586, 634, 668 |
| AclWI | GGATC | 1 cut(s) | 141 |
| AcuI | CTGAAG | 1 cut(s) | 441 |
| AcvI | CACGTG | 1 cut(s) | 677 |
| AcyI | GRCGYC | 1 cut(s) | 735 |
| AdeI | CACNNNGTG | 1 cut(s) | 680 |
| AfaI | GTAC | 1 cut(s) | 108 |
| AfeI | AGCGCT | 2 cut(s) | 186, 197 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 64, 321, 572, 573, 643, 696, 725, 769 |
| AflIII | ACRYGT | 2 cut(s) | 657, 674 |
| AgsI | TTSAA | 5 cut(s) | 96, 235, 242, 271, 519 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 338 |
| AjnI | CCWGG | 2 cut(s) | 117, 718 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 183, 204, 215, 236 |
| AluBI | AGCT | 4 cut(s) | 175, 355, 457, 479 |
| AluI | AGCT | 4 cut(s) | 175, 355, 457, 479 |
| AlwI | GGATC | 1 cut(s) | 141 |
| Aor51HI | AGCGCT | 2 cut(s) | 186, 197 |
| ApeKI | GCWGC | 1 cut(s) | 665 |
| AspA2I | CCTAGG | 1 cut(s) | 767 |
| AspLEI | GCGC | 4 cut(s) | 187, 198, 579, 737 |
| AspS9I | GGNCC | 1 cut(s) | 623 |
| AsuC2I | CCSGG | 1 cut(s) | 131 |
| AvaII | GGWCC | 1 cut(s) | 623 |
| AvrII | CCTAGG | 1 cut(s) | 767 |
| BanI | GGYRCC | 4 cut(s) | 121, 680, 734, 755 |
| BauI | CACGAG | 2 cut(s) | 442, 500 |
| BbrPI | CACGTG | 1 cut(s) | 677 |
| BbvI | GCAGC | 1 cut(s) | 652 |
| BciT130I | CCWGG | 2 cut(s) | 119, 720 |
| BciVI | GTATCC | 2 cut(s) | 664, 725 |
| BcnI | CCSGG | 1 cut(s) | 131 |
| BfaI | CTAG | 4 cut(s) | 15, 188, 432, 768 |
| BfmI | CTRYAG | 1 cut(s) | 474 |
| BfoI | RGCGCY | 3 cut(s) | 188, 199, 738 |
| BfuI | GTATCC | 2 cut(s) | 664, 725 |
| BisI | GCNGC | 1 cut(s) | 666 |
| BlnI | CCTAGG | 1 cut(s) | 767 |
| BlsI | GCNGC | 1 cut(s) | 667 |
| Bme1390I | CCNGG | 3 cut(s) | 119, 131, 720 |
| Bme18I | GGWCC | 1 cut(s) | 623 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 338 |
| BmgT120I | GGNCC | 1 cut(s) | 623 |
| BmiI | GGNNCC | 6 cut(s) | 123, 590, 624, 682, 736, 757 |
| BmrFI | CCNGG | 3 cut(s) | 119, 131, 720 |
| BmsI | GCATC | 1 cut(s) | 154 |
| BpuMI | CCSGG | 1 cut(s) | 131 |
| BsaAI | YACGTR | 1 cut(s) | 677 |
| BsaHI | GRCGYC | 1 cut(s) | 735 |
| BsaJI | CCNNGG | 3 cut(s) | 718, 738, 767 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 137, 167, 691, 721, 748, 778 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 64, 321, 572, 573, 643, 696, 725, 769 |
| Bse3DI | GCAATG | 1 cut(s) | 211 |
| BseBI | CCWGG | 2 cut(s) | 119, 720 |
| BseDI | CCNNGG | 3 cut(s) | 718, 738, 767 |
| BseGI | GGATG | 1 cut(s) | 169 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 64, 321, 572, 573, 643, 696, 725, 769 |
| BseMI | GCAATG | 1 cut(s) | 211 |
| BseMII | CTCAG | 1 cut(s) | 471 |
| BseXI | GCAGC | 1 cut(s) | 652 |
| BshNI | GGYRCC | 4 cut(s) | 121, 680, 734, 755 |
| BsiSI | CCGG | 1 cut(s) | 131 |
| BslFI | GGGAC | 1 cut(s) | 627 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 64, 321, 572, 573, 643, 696, 725, 769 |
| BsmFI | GGGAC | 1 cut(s) | 627 |
| Bsp143I | GATC | 3 cut(s) | 133, 156, 438 |
| Bsp19I | CCATGG | 1 cut(s) | 738 |
| BspACI | CCGC | 5 cut(s) | 375, 415, 586, 634, 668 |
| BspCNI | CTCAG | 1 cut(s) | 472 |
| BspLI | GGNNCC | 6 cut(s) | 123, 590, 624, 682, 736, 757 |
| BspPI | GGATC | 1 cut(s) | 141 |
| BspQI | GCTCTTC | 2 cut(s) | 186, 306 |
| BspT107I | GGYRCC | 4 cut(s) | 121, 680, 734, 755 |
| BsrBI | CCGCTC | 1 cut(s) | 586 |
| BsrDI | GCAATG | 1 cut(s) | 211 |
| BssECI | CCNNGG | 3 cut(s) | 718, 738, 767 |
| BssMI | GATC | 3 cut(s) | 133, 156, 438 |
| BssNI | GRCGYC | 1 cut(s) | 735 |
| BssSI | CACGAG | 2 cut(s) | 442, 500 |
| BssT1I | CCWWGG | 2 cut(s) | 738, 767 |
| Bst2BI | CACGAG | 2 cut(s) | 442, 500 |
| Bst2UI | CCWGG | 2 cut(s) | 119, 720 |
| Bst6I | CTCTTC | 2 cut(s) | 186, 306 |
| BstACI | GRCGYC | 1 cut(s) | 735 |
| BstBAI | YACGTR | 1 cut(s) | 677 |
| BstDEI | CTNAG | 2 cut(s) | 480, 594 |
| BstDSI | CCRYGG | 1 cut(s) | 738 |
| BstEII | GGTNACC | 1 cut(s) | 67 |
| BstF5I | GGATG | 1 cut(s) | 169 |
| BstH2I | RGCGCY | 3 cut(s) | 188, 199, 738 |
| BstHHI | GCGC | 4 cut(s) | 187, 198, 579, 737 |
| BstKTI | GATC | 3 cut(s) | 136, 159, 441 |
| BstMBI | GATC | 3 cut(s) | 133, 156, 438 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 193, 583 |
| BstNI | CCWGG | 2 cut(s) | 119, 720 |
| BstNSI | RCATGY | 1 cut(s) | 661 |
| BstPI | GGTNACC | 1 cut(s) | 67 |
| BstSCI | CCNGG | 3 cut(s) | 117, 129, 718 |
| BstSFI | CTRYAG | 1 cut(s) | 474 |
| BstV1I | GCAGC | 1 cut(s) | 652 |
| BsuI | GTATCC | 2 cut(s) | 664, 725 |
| BtgI | CCRYGG | 1 cut(s) | 738 |
| BtsCI | GGATG | 1 cut(s) | 169 |
| BtsIMutI | CAGTG | 1 cut(s) | 417 |
| CfoI | GCGC | 4 cut(s) | 187, 198, 579, 737 |
| Cfr13I | GGNCC | 1 cut(s) | 623 |
| CseI | GACGC | 1 cut(s) | 305 |
| Csp6I | GTAC | 1 cut(s) | 107 |
| CviAII | CATG | 6 cut(s) | 31, 316, 488, 658, 695, 739 |
| CviJI | RGCY | 7 cut(s) | 48, 175, 355, 392, 457, 479, 523 |
| CviKI_1 | RGCY | 7 cut(s) | 48, 175, 355, 392, 457, 479, 523 |
| CviQI | GTAC | 1 cut(s) | 107 |
| DdeI | CTNAG | 2 cut(s) | 480, 594 |
| DinI | GGCGCC | 1 cut(s) | 736 |
| DpnI | GATC | 3 cut(s) | 135, 158, 440 |
| DpnII | GATC | 3 cut(s) | 133, 156, 438 |
| DraIII | CACNNNGTG | 1 cut(s) | 680 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 621 |
| DriI | GACNNNNNGTC | 1 cut(s) | 338 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 621 |
| Eam1104I | CTCTTC | 2 cut(s) | 186, 306 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 338 |
| EarI | CTCTTC | 2 cut(s) | 186, 306 |
| EciI | GGCGGA | 1 cut(s) | 364 |
| Eco130I | CCWWGG | 2 cut(s) | 738, 767 |
| Eco47I | GGWCC | 1 cut(s) | 623 |
| Eco47III | AGCGCT | 2 cut(s) | 186, 197 |
| Eco57I | CTGAAG | 1 cut(s) | 441 |
| Eco72I | CACGTG | 1 cut(s) | 677 |
| Eco91I | GGTNACC | 1 cut(s) | 67 |
| EcoO65I | GGTNACC | 1 cut(s) | 67 |
| EcoRII | CCWGG | 2 cut(s) | 117, 718 |
| EcoT14I | CCWWGG | 2 cut(s) | 738, 767 |
| EgeI | GGCGCC | 1 cut(s) | 736 |
| EheI | GGCGCC | 1 cut(s) | 736 |
| ErhI | CCWWGG | 2 cut(s) | 738, 767 |
| FaeI | CATG | 6 cut(s) | 34, 319, 491, 661, 698, 742 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 204, 236 |
| FaqI | GGGAC | 1 cut(s) | 627 |
| FatI | CATG | 6 cut(s) | 30, 315, 487, 657, 694, 738 |
| Fnu4HI | GCNGC | 1 cut(s) | 666 |
| FokI | GGATG | 1 cut(s) | 176 |
| Fsp4HI | GCNGC | 1 cut(s) | 666 |
| FspBI | CTAG | 4 cut(s) | 15, 188, 432, 768 |
| GlaI | GCGC | 4 cut(s) | 186, 197, 578, 736 |
| GluI | GCNGC | 1 cut(s) | 666 |
| HaeII | RGCGCY | 3 cut(s) | 188, 199, 738 |
| HapII | CCGG | 1 cut(s) | 131 |
| HgaI | GACGC | 1 cut(s) | 305 |
| HhaI | GCGC | 4 cut(s) | 187, 198, 579, 737 |
| Hin1I | GRCGYC | 1 cut(s) | 735 |
| Hin1II | CATG | 6 cut(s) | 34, 319, 491, 661, 698, 742 |
| Hin6I | GCGC | 4 cut(s) | 185, 196, 577, 735 |
| HinP1I | GCGC | 4 cut(s) | 185, 196, 577, 735 |
| HinfI | GANTC | 3 cut(s) | 18, 38, 215 |
| HpaII | CCGG | 1 cut(s) | 131 |
| Hpy166II | GTNNAC | 1 cut(s) | 332 |
| Hpy188I | TCNGA | 3 cut(s) | 52, 229, 295 |
| Hpy188III | TCNNGA | 2 cut(s) | 442, 502 |
| Hpy8I | GTNNAC | 1 cut(s) | 332 |
| HpyAV | CCTTC | 3 cut(s) | 229, 230, 388 |
| HpyCH4IV | ACGT | 2 cut(s) | 616, 676 |
| HpyCH4V | TGCA | 2 cut(s) | 167, 563 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 193, 583 |
| HpyF3I | CTNAG | 2 cut(s) | 480, 594 |
| HpySE526I | ACGT | 2 cut(s) | 616, 676 |
| Hsp92I | GRCGYC | 1 cut(s) | 735 |
| Hsp92II | CATG | 6 cut(s) | 34, 319, 491, 661, 698, 742 |
| HspAI | GCGC | 4 cut(s) | 185, 196, 577, 735 |
| KasI | GGCGCC | 1 cut(s) | 734 |
| Kzo9I | GATC | 3 cut(s) | 133, 156, 438 |
| LguI | GCTCTTC | 2 cut(s) | 186, 306 |
| LmnI | GCTCC | 1 cut(s) | 583 |
| LpnPI | CCDG | 7 cut(s) | 30, 104, 131, 144, 351, 705, 732 |
| Lsp1109I | GCAGC | 1 cut(s) | 652 |
| LweI | GCATC | 1 cut(s) | 154 |
| MaeI | CTAG | 4 cut(s) | 15, 188, 432, 768 |
| MaeII | ACGT | 2 cut(s) | 616, 676 |
| MaeIII | GTNAC | 2 cut(s) | 67, 340 |
| MalI | GATC | 3 cut(s) | 135, 158, 440 |
| MbiI | CCGCTC | 1 cut(s) | 586 |
| MboI | GATC | 3 cut(s) | 133, 156, 438 |
| MboII | GAAGA | 3 cut(s) | 203, 293, 659 |
| MluCI | AATT | 5 cut(s) | 289, 357, 508, 514, 553 |
| Mly113I | GGCGCC | 1 cut(s) | 735 |
| MlyI | GAGTC | 2 cut(s) | 12, 32 |
| MnlI | CCTC | 9 cut(s) | 98, 315, 438, 498, 541, 566, 604, 695, 774 |
| MslI | CAYNNNNRTG | 1 cut(s) | 500 |
| MspI | CCGG | 1 cut(s) | 131 |
| MspR9I | CCNGG | 3 cut(s) | 119, 131, 720 |
| MvaI | CCWGG | 2 cut(s) | 119, 720 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 193, 583 |
| NarI | GGCGCC | 1 cut(s) | 735 |
| NciI | CCSGG | 1 cut(s) | 131 |
| NcoI | CCATGG | 1 cut(s) | 738 |
| NdeII | GATC | 3 cut(s) | 133, 156, 438 |
| NlaIII | CATG | 6 cut(s) | 34, 319, 491, 661, 698, 742 |
| NlaIV | GGNNCC | 6 cut(s) | 123, 590, 624, 682, 736, 757 |
| NmuCI | GTSAC | 1 cut(s) | 340 |
| NspI | RCATGY | 1 cut(s) | 661 |
| PciI | ACATGT | 1 cut(s) | 657 |
| PciSI | GCTCTTC | 2 cut(s) | 186, 306 |
| PfeI | GAWTC | 1 cut(s) | 215 |
| PkrI | GCNGC | 1 cut(s) | 667 |
| PleI | GAGTC | 2 cut(s) | 12, 32 |
| PluTI | GGCGCC | 1 cut(s) | 738 |
| PmaCI | CACGTG | 1 cut(s) | 677 |
| PmlI | CACGTG | 1 cut(s) | 677 |
| PpsI | GAGTC | 2 cut(s) | 12, 32 |
| Ppu21I | YACGTR | 1 cut(s) | 677 |
| PscI | ACATGT | 1 cut(s) | 657 |
| PsiI | TTATAA | 2 cut(s) | 513, 558 |
| Psp6I | CCWGG | 2 cut(s) | 117, 718 |
| PspCI | CACGTG | 1 cut(s) | 677 |
| PspEI | GGTNACC | 1 cut(s) | 67 |
| PspGI | CCWGG | 2 cut(s) | 117, 718 |
| PspN4I | GGNNCC | 6 cut(s) | 123, 590, 624, 682, 736, 757 |
| PspPI | GGNCC | 1 cut(s) | 623 |
| RsaI | GTAC | 1 cut(s) | 108 |
| RsaNI | GTAC | 1 cut(s) | 107 |
| RseI | CAYNNNNRTG | 1 cut(s) | 500 |
| SapI | GCTCTTC | 2 cut(s) | 186, 306 |
| SatI | GCNGC | 1 cut(s) | 666 |
| Sau3AI | GATC | 3 cut(s) | 133, 156, 438 |
| Sau96I | GGNCC | 1 cut(s) | 623 |
| SchI | GAGTC | 2 cut(s) | 12, 32 |
| ScrFI | CCNGG | 3 cut(s) | 119, 131, 720 |
| SfaNI | GCATC | 1 cut(s) | 154 |
| SfcI | CTRYAG | 1 cut(s) | 474 |
| SfoI | GGCGCC | 1 cut(s) | 736 |
| SinI | GGWCC | 1 cut(s) | 623 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 500 |
| Sse9I | AATT | 5 cut(s) | 289, 357, 508, 514, 553 |
| SsiI | CCGC | 5 cut(s) | 375, 415, 586, 634, 668 |
| SspDI | GGCGCC | 1 cut(s) | 734 |
| SspMI | CTAG | 4 cut(s) | 15, 188, 432, 768 |
| StyD4I | CCNGG | 3 cut(s) | 117, 129, 718 |
| StyI | CCWWGG | 2 cut(s) | 738, 767 |
| TaiI | ACGT | 2 cut(s) | 619, 679 |
| TaqI | TCGA | 3 cut(s) | 5, 21, 155 |
| TasI | AATT | 5 cut(s) | 289, 357, 508, 514, 553 |
| TfiI | GAWTC | 1 cut(s) | 215 |
| TscAI | CASTG | 1 cut(s) | 424 |
| TseFI | GTSAC | 1 cut(s) | 340 |
| TseI | GCWGC | 1 cut(s) | 665 |
| Tsp45I | GTSAC | 1 cut(s) | 340 |
| TspDTI | ATGAA | 2 cut(s) | 24, 440 |
| TspRI | CASTG | 1 cut(s) | 424 |
| VpaK11BI | GGWCC | 1 cut(s) | 623 |
| XceI | RCATGY | 1 cut(s) | 661 |
| XmaJI | CCTAGG | 1 cut(s) | 767 |
| XspI | CTAG | 4 cut(s) | 15, 188, 432, 768 |