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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 765, 810 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 876 |
| AccB1I | GGYRCC | 2 cut(s) | 361, 986 |
| AccBSI | CCGCTC | 1 cut(s) | 841 |
| AciI | CCGC | 3 cut(s) | 841, 910, 969 |
| AclWI | GGATC | 2 cut(s) | 337, 350 |
| AcoI | YGGCCR | 2 cut(s) | 99, 973 |
| AcyI | GRCGYC | 1 cut(s) | 430 |
| AfaI | GTAC | 2 cut(s) | 391, 819 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 54, 304, 633, 827, 828 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 583, 650 |
| AjiI | CACGTC | 1 cut(s) | 51 |
| AjnI | CCWGG | 1 cut(s) | 522 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 495, 527 |
| AluBI | AGCT | 8 cut(s) | 34, 72, 84, 94, 288, 611, 667, 888 |
| AluI | AGCT | 8 cut(s) | 34, 72, 84, 94, 288, 611, 667, 888 |
| Alw26I | GTCTC | 4 cut(s) | 57, 421, 595, 703 |
| AlwI | GGATC | 2 cut(s) | 337, 350 |
| AoxI | GGCC | 3 cut(s) | 99, 773, 973 |
| ApeKI | GCWGC | 4 cut(s) | 10, 69, 91, 888 |
| AspLEI | GCGC | 1 cut(s) | 834 |
| AspS9I | GGNCC | 1 cut(s) | 878 |
| AvaII | GGWCC | 1 cut(s) | 878 |
| BalI | TGGCCA | 1 cut(s) | 975 |
| BamHI | GGATCC | 1 cut(s) | 342 |
| BanI | GGYRCC | 2 cut(s) | 361, 986 |
| BbvI | GCAGC | 4 cut(s) | 22, 81, 103, 875 |
| BccI | CCATC | 3 cut(s) | 333, 755, 998 |
| BceAI | ACGGC | 1 cut(s) | 632 |
| BciT130I | CCWGG | 1 cut(s) | 524 |
| BciVI | GTATCC | 1 cut(s) | 724 |
| BcoDI | GTCTC | 4 cut(s) | 57, 421, 595, 703 |
| BfaI | CTAG | 4 cut(s) | 111, 285, 480, 500 |
| BfmI | CTRYAG | 2 cut(s) | 8, 89 |
| BfuI | GTATCC | 1 cut(s) | 724 |
| BisI | GCNGC | 5 cut(s) | 11, 70, 92, 889, 969 |
| BlsI | GCNGC | 5 cut(s) | 12, 71, 93, 890, 970 |
| Bme1390I | CCNGG | 1 cut(s) | 524 |
| Bme18I | GGWCC | 1 cut(s) | 878 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 583, 650 |
| BmgBI | CACGTC | 1 cut(s) | 51 |
| BmgT120I | GGNCC | 1 cut(s) | 878 |
| BmiI | GGNNCC | 4 cut(s) | 344, 363, 845, 988 |
| BmrFI | CCNGG | 1 cut(s) | 524 |
| BmsI | GCATC | 1 cut(s) | 466 |
| BsaHI | GRCGYC | 1 cut(s) | 430 |
| BsaJI | CCNNGG | 1 cut(s) | 488 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 54, 304, 633, 827, 828 |
| Bse3DI | GCAATG | 1 cut(s) | 963 |
| BseBI | CCWGG | 1 cut(s) | 524 |
| BseDI | CCNNGG | 1 cut(s) | 488 |
| BseGI | GGATG | 3 cut(s) | 319, 481, 747 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 54, 304, 633, 827, 828 |
| BseMI | GCAATG | 1 cut(s) | 963 |
| BseMII | CTCAG | 2 cut(s) | 32, 714 |
| BseRI | GAGGAG | 1 cut(s) | 524 |
| BseXI | GCAGC | 4 cut(s) | 22, 81, 103, 875 |
| BshFI | GGCC | 3 cut(s) | 101, 775, 975 |
| BshNI | GGYRCC | 2 cut(s) | 361, 986 |
| BslFI | GGGAC | 1 cut(s) | 873 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 54, 304, 633, 827, 828 |
| BsmAI | GTCTC | 4 cut(s) | 57, 421, 595, 703 |
| BsmBI | CGTCTC | 4 cut(s) | 57, 421, 595, 703 |
| BsmFI | GGGAC | 1 cut(s) | 873 |
| BsnI | GGCC | 3 cut(s) | 101, 775, 975 |
| Bsp143I | GATC | 3 cut(s) | 342, 468, 793 |
| Bsp19I | CCATGG | 1 cut(s) | 488 |
| BspACI | CCGC | 3 cut(s) | 841, 910, 969 |
| BspANI | GGCC | 3 cut(s) | 101, 775, 975 |
| BspCNI | CTCAG | 2 cut(s) | 31, 713 |
| BspLI | GGNNCC | 4 cut(s) | 344, 363, 845, 988 |
| BspMAI | CTGCAG | 2 cut(s) | 12, 93 |
| BspPI | GGATC | 2 cut(s) | 337, 350 |
| BspQI | GCTCTTC | 1 cut(s) | 498 |
| BspT107I | GGYRCC | 2 cut(s) | 361, 986 |
| BsrBI | CCGCTC | 1 cut(s) | 841 |
| BsrDI | GCAATG | 1 cut(s) | 963 |
| BssECI | CCNNGG | 1 cut(s) | 488 |
| BssMI | GATC | 3 cut(s) | 342, 468, 793 |
| BssNI | GRCGYC | 1 cut(s) | 430 |
| BssT1I | CCWWGG | 1 cut(s) | 488 |
| Bst2UI | CCWGG | 1 cut(s) | 524 |
| Bst4CI | ACNGT | 1 cut(s) | 728 |
| Bst6I | CTCTTC | 2 cut(s) | 419, 498 |
| BstACI | GRCGYC | 1 cut(s) | 430 |
| BstC8I | GCNNGC | 2 cut(s) | 24, 973 |
| BstDEI | CTNAG | 3 cut(s) | 18, 236, 700 |
| BstDSI | CCRYGG | 1 cut(s) | 488 |
| BstEII | GGTNACC | 1 cut(s) | 905 |
| BstF5I | GGATG | 3 cut(s) | 319, 481, 747 |
| BstHHI | GCGC | 1 cut(s) | 834 |
| BstKTI | GATC | 3 cut(s) | 345, 471, 796 |
| BstMAI | GTCTC | 4 cut(s) | 57, 421, 595, 703 |
| BstMBI | GATC | 3 cut(s) | 342, 468, 793 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 10, 19, 838, 942 |
| BstNI | CCWGG | 1 cut(s) | 524 |
| BstPI | GGTNACC | 1 cut(s) | 905 |
| BstSCI | CCNGG | 1 cut(s) | 522 |
| BstSFI | CTRYAG | 2 cut(s) | 8, 89 |
| BstV1I | GCAGC | 4 cut(s) | 22, 81, 103, 875 |
| BstX2I | RGATCY | 1 cut(s) | 342 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 983 |
| BstYI | RGATCY | 1 cut(s) | 342 |
| BsuI | GTATCC | 1 cut(s) | 724 |
| BsuRI | GGCC | 3 cut(s) | 101, 775, 975 |
| BtgI | CCRYGG | 1 cut(s) | 488 |
| BtgZI | GCGATG | 1 cut(s) | 257 |
| BtrI | CACGTC | 1 cut(s) | 51 |
| BtsCI | GGATG | 3 cut(s) | 319, 481, 747 |
| BtsIMutI | CAGTG | 1 cut(s) | 733 |
| Cac8I | GCNNGC | 2 cut(s) | 24, 973 |
| CfoI | GCGC | 1 cut(s) | 834 |
| Cfr13I | GGNCC | 1 cut(s) | 878 |
| CseI | GACGC | 1 cut(s) | 438 |
| Csp6I | GTAC | 2 cut(s) | 390, 818 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 164, 199 |
| CviAII | CATG | 6 cut(s) | 223, 436, 463, 489, 628, 932 |
| CviQI | GTAC | 2 cut(s) | 390, 818 |
| DdeI | CTNAG | 3 cut(s) | 18, 236, 700 |
| DpnI | GATC | 3 cut(s) | 344, 470, 795 |
| DpnII | GATC | 3 cut(s) | 342, 468, 793 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 876 |
| DriI | GACNNNNNGTC | 2 cut(s) | 583, 650 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 876 |
| EaeI | YGGCCR | 2 cut(s) | 99, 973 |
| Eam1104I | CTCTTC | 2 cut(s) | 419, 498 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 583, 650 |
| EarI | CTCTTC | 2 cut(s) | 419, 498 |
| Eco130I | CCWWGG | 1 cut(s) | 488 |
| Eco147I | AGGCCT | 1 cut(s) | 775 |
| Eco47I | GGWCC | 1 cut(s) | 878 |
| Eco91I | GGTNACC | 1 cut(s) | 905 |
| EcoO65I | GGTNACC | 1 cut(s) | 905 |
| EcoRII | CCWGG | 1 cut(s) | 522 |
| EcoT14I | CCWWGG | 1 cut(s) | 488 |
| ErhI | CCWWGG | 1 cut(s) | 488 |
| Esp3I | CGTCTC | 4 cut(s) | 57, 421, 595, 703 |
| FaeI | CATG | 6 cut(s) | 226, 439, 466, 492, 631, 935 |
| FaqI | GGGAC | 1 cut(s) | 873 |
| FatI | CATG | 6 cut(s) | 222, 435, 462, 488, 627, 931 |
| Fnu4HI | GCNGC | 5 cut(s) | 11, 70, 92, 889, 969 |
| FokI | GGATG | 3 cut(s) | 326, 488, 734 |
| Fsp4HI | GCNGC | 5 cut(s) | 11, 70, 92, 889, 969 |
| FspBI | CTAG | 4 cut(s) | 111, 285, 480, 500 |
| GlaI | GCGC | 1 cut(s) | 833 |
| GluI | GCNGC | 5 cut(s) | 11, 70, 92, 889, 969 |
| HaeIII | GGCC | 3 cut(s) | 101, 775, 975 |
| HgaI | GACGC | 1 cut(s) | 438 |
| HhaI | GCGC | 1 cut(s) | 834 |
| Hin1I | GRCGYC | 1 cut(s) | 430 |
| Hin1II | CATG | 6 cut(s) | 226, 439, 466, 492, 631, 935 |
| Hin6I | GCGC | 1 cut(s) | 832 |
| HinP1I | GCGC | 1 cut(s) | 832 |
| HindIII | AAGCTT | 1 cut(s) | 82 |
| HinfI | GANTC | 8 cut(s) | 172, 192, 209, 219, 278, 527, 570, 743 |
| Hpy166II | GTNNAC | 1 cut(s) | 644 |
| Hpy188I | TCNGA | 5 cut(s) | 57, 292, 595, 607, 782 |
| Hpy188III | TCNNGA | 5 cut(s) | 121, 149, 421, 500, 797 |
| Hpy8I | GTNNAC | 1 cut(s) | 644 |
| HpyAV | CCTTC | 3 cut(s) | 541, 700, 896 |
| HpyCH4III | ACNGT | 1 cut(s) | 728 |
| HpyCH4IV | ACGT | 5 cut(s) | 50, 182, 739, 871, 949 |
| HpyCH4V | TGCA | 2 cut(s) | 10, 91 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 10, 19, 838, 942 |
| HpyF3I | CTNAG | 3 cut(s) | 18, 236, 700 |
| HpySE526I | ACGT | 5 cut(s) | 50, 182, 739, 871, 949 |
| Hsp92I | GRCGYC | 1 cut(s) | 430 |
| Hsp92II | CATG | 6 cut(s) | 226, 439, 466, 492, 631, 935 |
| HspAI | GCGC | 1 cut(s) | 832 |
| Kzo9I | GATC | 3 cut(s) | 342, 468, 793 |
| LguI | GCTCTTC | 1 cut(s) | 498 |
| LmnI | GCTCC | 2 cut(s) | 558, 838 |
| Lsp1109I | GCAGC | 4 cut(s) | 22, 81, 103, 875 |
| LweI | GCATC | 1 cut(s) | 466 |
| MaeI | CTAG | 4 cut(s) | 111, 285, 480, 500 |
| MaeII | ACGT | 5 cut(s) | 50, 182, 739, 871, 949 |
| MaeIII | GTNAC | 3 cut(s) | 307, 652, 905 |
| MalI | GATC | 3 cut(s) | 344, 470, 795 |
| MbiI | CCGCTC | 1 cut(s) | 841 |
| MboI | GATC | 3 cut(s) | 342, 468, 793 |
| MboII | GAAGA | 3 cut(s) | 436, 515, 769 |
| MfeI | CAATTG | 2 cut(s) | 301, 452 |
| MflI | RGATCY | 1 cut(s) | 342 |
| MlsI | TGGCCA | 1 cut(s) | 975 |
| MluNI | TGGCCA | 1 cut(s) | 975 |
| MmeI | TCCRAC | 1 cut(s) | 760 |
| MnlI | CCTC | 8 cut(s) | 25, 117, 542, 545, 793, 821, 916, 950 |
| Mox20I | TGGCCA | 1 cut(s) | 975 |
| MscI | TGGCCA | 1 cut(s) | 975 |
| MseI | TTAA | 2 cut(s) | 786, 855 |
| MslI | CAYNNNNRTG | 2 cut(s) | 752, 981 |
| Msp20I | TGGCCA | 1 cut(s) | 975 |
| MspA1I | CMGCKG | 1 cut(s) | 971 |
| MspR9I | CCNGG | 1 cut(s) | 524 |
| MunI | CAATTG | 2 cut(s) | 301, 452 |
| MvaI | CCWGG | 1 cut(s) | 524 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 10, 19, 838, 942 |
| NcoI | CCATGG | 1 cut(s) | 488 |
| NdeII | GATC | 3 cut(s) | 342, 468, 793 |
| NlaIII | CATG | 6 cut(s) | 226, 439, 466, 492, 631, 935 |
| NlaIV | GGNNCC | 4 cut(s) | 344, 363, 845, 988 |
| NmuCI | GTSAC | 2 cut(s) | 307, 652 |
| PceI | AGGCCT | 1 cut(s) | 775 |
| PciSI | GCTCTTC | 1 cut(s) | 498 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 868 |
| PfeI | GAWTC | 8 cut(s) | 172, 192, 209, 219, 278, 527, 570, 743 |
| PfoI | TCCNGGA | 1 cut(s) | 522 |
| PkrI | GCNGC | 5 cut(s) | 12, 71, 93, 890, 970 |
| PsiI | TTATAA | 2 cut(s) | 765, 810 |
| Psp6I | CCWGG | 1 cut(s) | 522 |
| PspEI | GGTNACC | 1 cut(s) | 905 |
| PspGI | CCWGG | 1 cut(s) | 522 |
| PspN4I | GGNNCC | 4 cut(s) | 344, 363, 845, 988 |
| PspPI | GGNCC | 1 cut(s) | 878 |
| PstI | CTGCAG | 2 cut(s) | 12, 93 |
| PsuI | RGATCY | 1 cut(s) | 342 |
| RsaI | GTAC | 2 cut(s) | 391, 819 |
| RsaNI | GTAC | 2 cut(s) | 390, 818 |
| RseI | CAYNNNNRTG | 2 cut(s) | 752, 981 |
| SapI | GCTCTTC | 1 cut(s) | 498 |
| SaqAI | TTAA | 2 cut(s) | 786, 855 |
| SatI | GCNGC | 5 cut(s) | 11, 70, 92, 889, 969 |
| Sau3AI | GATC | 3 cut(s) | 342, 468, 793 |
| Sau96I | GGNCC | 1 cut(s) | 878 |
| ScrFI | CCNGG | 1 cut(s) | 524 |
| SfaNI | GCATC | 1 cut(s) | 466 |
| SfcI | CTRYAG | 2 cut(s) | 8, 89 |
| SinI | GGWCC | 1 cut(s) | 878 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 752, 981 |
| SseBI | AGGCCT | 1 cut(s) | 775 |
| SsiI | CCGC | 3 cut(s) | 841, 910, 969 |
| SspMI | CTAG | 4 cut(s) | 111, 285, 480, 500 |
| StuI | AGGCCT | 1 cut(s) | 775 |
| StyD4I | CCNGG | 1 cut(s) | 522 |
| StyI | CCWWGG | 1 cut(s) | 488 |
| TaaI | ACNGT | 1 cut(s) | 728 |
| TaiI | ACGT | 5 cut(s) | 53, 185, 742, 874, 952 |
| TaqI | TCGA | 3 cut(s) | 190, 248, 261 |
| TauI | GCSGC | 1 cut(s) | 971 |
| TfiI | GAWTC | 8 cut(s) | 172, 192, 209, 219, 278, 527, 570, 743 |
| Tru1I | TTAA | 2 cut(s) | 786, 855 |
| Tru9I | TTAA | 2 cut(s) | 786, 855 |
| TscAI | CASTG | 1 cut(s) | 733 |
| TseFI | GTSAC | 2 cut(s) | 307, 652 |
| TseI | GCWGC | 4 cut(s) | 10, 69, 91, 888 |
| Tsp45I | GTSAC | 2 cut(s) | 307, 652 |
| TspDTI | ATGAA | 3 cut(s) | 211, 222, 246 |
| TspGWI | ACGGA | 3 cut(s) | 326, 577, 882 |
| TspRI | CASTG | 1 cut(s) | 733 |
| VpaK11BI | GGWCC | 1 cut(s) | 878 |
| XbaI | TCTAGA | 1 cut(s) | 499 |
| XspI | CTAG | 4 cut(s) | 111, 285, 480, 500 |