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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 374 |
| AccI | GTMKAC | 1 cut(s) | 245 |
| AccIII | TCCGGA | 1 cut(s) | 226 |
| AciI | CCGC | 1 cut(s) | 516 |
| AclWI | GGATC | 3 cut(s) | 128, 198, 257 |
| AcoI | YGGCCR | 2 cut(s) | 13, 361 |
| AcyI | GRCGYC | 1 cut(s) | 375 |
| AdeI | CACNNNGTG | 1 cut(s) | 556 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 240 |
| AgsI | TTSAA | 1 cut(s) | 412 |
| AluBI | AGCT | 4 cut(s) | 139, 149, 497, 548 |
| AluI | AGCT | 4 cut(s) | 139, 149, 497, 548 |
| Alw21I | GWGCWC | 2 cut(s) | 141, 499 |
| Alw26I | GTCTC | 1 cut(s) | 73 |
| AlwI | GGATC | 3 cut(s) | 128, 198, 257 |
| Aor13HI | TCCGGA | 1 cut(s) | 226 |
| AoxI | GGCC | 2 cut(s) | 13, 361 |
| AseI | ATTAAT | 1 cut(s) | 425 |
| AspLEI | GCGC | 2 cut(s) | 377, 418 |
| AsuHPI | GGTGA | 1 cut(s) | 505 |
| BalI | TGGCCA | 2 cut(s) | 15, 363 |
| BanI | GGYRCC | 1 cut(s) | 374 |
| BanII | GRGCYC | 2 cut(s) | 141, 499 |
| BauI | CACGAG | 1 cut(s) | 498 |
| BbsI | GAAGAC | 1 cut(s) | 53 |
| Bbv12I | GWGCWC | 2 cut(s) | 141, 499 |
| BccI | CCATC | 2 cut(s) | 73, 402 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 92, 126 |
| BcoDI | GTCTC | 1 cut(s) | 73 |
| BfaI | CTAG | 1 cut(s) | 584 |
| BfoI | RGCGCY | 2 cut(s) | 378, 419 |
| BmiI | GGNNCC | 2 cut(s) | 317, 376 |
| BpiI | GAAGAC | 1 cut(s) | 53 |
| Bsa29I | ATCGAT | 1 cut(s) | 102 |
| BsaBI | GATNNNNATC | 1 cut(s) | 38 |
| BsaHI | GRCGYC | 1 cut(s) | 375 |
| BsaJI | CCNNGG | 1 cut(s) | 207 |
| BsaWI | WCCGGW | 1 cut(s) | 226 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 240 |
| Bse1I | ACTGG | 1 cut(s) | 513 |
| Bse3DI | GCAATG | 1 cut(s) | 358 |
| Bse8I | GATNNNNATC | 1 cut(s) | 38 |
| BseAI | TCCGGA | 1 cut(s) | 226 |
| BseCI | ATCGAT | 1 cut(s) | 102 |
| BseDI | CCNNGG | 1 cut(s) | 207 |
| BseJI | GATNNNNATC | 1 cut(s) | 38 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 240 |
| BseMI | GCAATG | 1 cut(s) | 358 |
| BseMII | CTCAG | 1 cut(s) | 462 |
| BseNI | ACTGG | 1 cut(s) | 513 |
| BshFI | GGCC | 2 cut(s) | 15, 363 |
| BshNI | GGYRCC | 1 cut(s) | 374 |
| BshVI | ATCGAT | 1 cut(s) | 102 |
| BsiHKAI | GWGCWC | 2 cut(s) | 141, 499 |
| BsiSI | CCGG | 1 cut(s) | 227 |
| BslFI | GGGAC | 1 cut(s) | 495 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 240 |
| BsmAI | GTCTC | 1 cut(s) | 73 |
| BsmBI | CGTCTC | 1 cut(s) | 73 |
| BsmFI | GGGAC | 1 cut(s) | 495 |
| BsnI | GGCC | 2 cut(s) | 15, 363 |
| Bsp1286I | GDGCHC | 2 cut(s) | 141, 499 |
| Bsp13I | TCCGGA | 1 cut(s) | 226 |
| Bsp143I | GATC | 6 cut(s) | 39, 120, 203, 262, 568, 580 |
| BspACI | CCGC | 1 cut(s) | 516 |
| BspANI | GGCC | 2 cut(s) | 15, 363 |
| BspCNI | CTCAG | 1 cut(s) | 463 |
| BspDI | ATCGAT | 1 cut(s) | 102 |
| BspEI | TCCGGA | 1 cut(s) | 226 |
| BspHI | TCATGA | 1 cut(s) | 133 |
| BspLI | GGNNCC | 2 cut(s) | 317, 376 |
| BspPI | GGATC | 3 cut(s) | 128, 198, 257 |
| BspT107I | GGYRCC | 1 cut(s) | 374 |
| BsrDI | GCAATG | 1 cut(s) | 358 |
| BsrI | ACTGG | 1 cut(s) | 513 |
| BssECI | CCNNGG | 1 cut(s) | 207 |
| BssMI | GATC | 6 cut(s) | 39, 120, 203, 262, 568, 580 |
| BssNAI | GTATAC | 1 cut(s) | 246 |
| BssNI | GRCGYC | 1 cut(s) | 375 |
| BssSI | CACGAG | 1 cut(s) | 498 |
| Bst1107I | GTATAC | 1 cut(s) | 246 |
| Bst2BI | CACGAG | 1 cut(s) | 498 |
| Bst4CI | ACNGT | 1 cut(s) | 296 |
| BstACI | GRCGYC | 1 cut(s) | 375 |
| BstDEI | CTNAG | 3 cut(s) | 87, 387, 471 |
| BstDSI | CCRYGG | 1 cut(s) | 207 |
| BstEII | GGTNACC | 2 cut(s) | 290, 511 |
| BstH2I | RGCGCY | 2 cut(s) | 378, 419 |
| BstHHI | GCGC | 2 cut(s) | 377, 418 |
| BstKTI | GATC | 6 cut(s) | 42, 123, 206, 265, 571, 583 |
| BstMAI | GTCTC | 1 cut(s) | 73 |
| BstMBI | GATC | 6 cut(s) | 39, 120, 203, 262, 568, 580 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 413, 524, 545 |
| BstPI | GGTNACC | 2 cut(s) | 290, 511 |
| BstV2I | GAAGAC | 1 cut(s) | 53 |
| BstX2I | RGATCY | 1 cut(s) | 203 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 371 |
| BstYI | RGATCY | 1 cut(s) | 203 |
| BstZ17I | GTATAC | 1 cut(s) | 246 |
| Bsu15I | ATCGAT | 1 cut(s) | 102 |
| BsuRI | GGCC | 2 cut(s) | 15, 363 |
| BsuTUI | ATCGAT | 1 cut(s) | 102 |
| BtgI | CCRYGG | 1 cut(s) | 207 |
| CciI | TCATGA | 1 cut(s) | 133 |
| CfoI | GCGC | 2 cut(s) | 377, 418 |
| ClaI | ATCGAT | 1 cut(s) | 102 |
| CseI | GACGC | 1 cut(s) | 413 |
| CviAII | CATG | 3 cut(s) | 134, 170, 365 |
| CviJI | RGCY | 8 cut(s) | 15, 20, 139, 149, 363, 393, 497, 548 |
| CviKI_1 | RGCY | 8 cut(s) | 15, 20, 139, 149, 363, 393, 497, 548 |
| DdeI | CTNAG | 3 cut(s) | 87, 387, 471 |
| DinI | GGCGCC | 1 cut(s) | 376 |
| DpnI | GATC | 6 cut(s) | 41, 122, 205, 264, 570, 582 |
| DpnII | GATC | 6 cut(s) | 39, 120, 203, 262, 568, 580 |
| DraIII | CACNNNGTG | 1 cut(s) | 556 |
| EaeI | YGGCCR | 2 cut(s) | 13, 361 |
| Ecl136II | GAGCTC | 2 cut(s) | 139, 497 |
| Eco24I | GRGCYC | 2 cut(s) | 141, 499 |
| Eco53kI | GAGCTC | 2 cut(s) | 139, 497 |
| Eco91I | GGTNACC | 2 cut(s) | 290, 511 |
| EcoICRI | GAGCTC | 2 cut(s) | 139, 497 |
| EcoO65I | GGTNACC | 2 cut(s) | 290, 511 |
| EcoT38I | GRGCYC | 2 cut(s) | 141, 499 |
| EgeI | GGCGCC | 1 cut(s) | 376 |
| EheI | GGCGCC | 1 cut(s) | 376 |
| Esp3I | CGTCTC | 1 cut(s) | 73 |
| FaeI | CATG | 3 cut(s) | 137, 173, 368 |
| FaqI | GGGAC | 1 cut(s) | 495 |
| FatI | CATG | 3 cut(s) | 133, 169, 364 |
| FblI | GTMKAC | 1 cut(s) | 245 |
| FriOI | GRGCYC | 2 cut(s) | 141, 499 |
| FspBI | CTAG | 1 cut(s) | 584 |
| GlaI | GCGC | 2 cut(s) | 376, 417 |
| HaeII | RGCGCY | 2 cut(s) | 378, 419 |
| HaeIII | GGCC | 2 cut(s) | 15, 363 |
| HapII | CCGG | 1 cut(s) | 227 |
| HgaI | GACGC | 1 cut(s) | 413 |
| HhaI | GCGC | 2 cut(s) | 377, 418 |
| Hin1I | GRCGYC | 1 cut(s) | 375 |
| Hin1II | CATG | 3 cut(s) | 137, 173, 368 |
| Hin6I | GCGC | 2 cut(s) | 375, 416 |
| HinP1I | GCGC | 2 cut(s) | 375, 416 |
| HinfI | GANTC | 3 cut(s) | 49, 99, 230 |
| HpaII | CCGG | 1 cut(s) | 227 |
| HphI | GGTGA | 1 cut(s) | 505 |
| Hpy166II | GTNNAC | 2 cut(s) | 246, 329 |
| Hpy188I | TCNGA | 2 cut(s) | 262, 472 |
| Hpy188III | TCNNGA | 9 cut(s) | 43, 134, 201, 227, 252, 456, 500, 572, 584 |
| Hpy8I | GTNNAC | 2 cut(s) | 246, 329 |
| HpyAV | CCTTC | 3 cut(s) | 70, 281, 315 |
| HpyCH4III | ACNGT | 1 cut(s) | 296 |
| HpyCH4IV | ACGT | 1 cut(s) | 331 |
| HpyCH4V | TGCA | 2 cut(s) | 74, 113 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 413, 524, 545 |
| HpyF3I | CTNAG | 3 cut(s) | 87, 387, 471 |
| HpySE526I | ACGT | 1 cut(s) | 331 |
| Hsp92I | GRCGYC | 1 cut(s) | 375 |
| Hsp92II | CATG | 3 cut(s) | 137, 173, 368 |
| HspAI | GCGC | 2 cut(s) | 375, 416 |
| KasI | GGCGCC | 1 cut(s) | 374 |
| Kpn2I | TCCGGA | 1 cut(s) | 226 |
| Kzo9I | GATC | 6 cut(s) | 39, 120, 203, 262, 568, 580 |
| LmnI | GCTCC | 1 cut(s) | 146 |
| LpnPI | CCDG | 4 cut(s) | 237, 240, 345, 494 |
| MaeI | CTAG | 1 cut(s) | 584 |
| MaeII | ACGT | 1 cut(s) | 331 |
| MaeIII | GTNAC | 2 cut(s) | 290, 511 |
| MalI | GATC | 6 cut(s) | 41, 122, 205, 264, 570, 582 |
| MboI | GATC | 6 cut(s) | 39, 120, 203, 262, 568, 580 |
| MboII | GAAGA | 5 cut(s) | 58, 199, 515, 578, 587 |
| MflI | RGATCY | 1 cut(s) | 203 |
| MhlI | GDGCHC | 2 cut(s) | 141, 499 |
| MlsI | TGGCCA | 2 cut(s) | 15, 363 |
| MluCI | AATT | 4 cut(s) | 196, 235, 271, 422 |
| MluNI | TGGCCA | 2 cut(s) | 15, 363 |
| Mly113I | GGCGCC | 1 cut(s) | 375 |
| MlyI | GAGTC | 1 cut(s) | 43 |
| MnlI | CCTC | 4 cut(s) | 337, 341, 367, 429 |
| Mox20I | TGGCCA | 2 cut(s) | 15, 363 |
| MroI | TCCGGA | 1 cut(s) | 226 |
| MscI | TGGCCA | 2 cut(s) | 15, 363 |
| MseI | TTAA | 1 cut(s) | 425 |
| MslI | CAYNNNNRTG | 2 cut(s) | 369, 399 |
| Msp20I | TGGCCA | 2 cut(s) | 15, 363 |
| MspI | CCGG | 1 cut(s) | 227 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 413, 524, 545 |
| NarI | GGCGCC | 1 cut(s) | 375 |
| NdeII | GATC | 6 cut(s) | 39, 120, 203, 262, 568, 580 |
| NlaIII | CATG | 3 cut(s) | 137, 173, 368 |
| NlaIV | GGNNCC | 2 cut(s) | 317, 376 |
| NmuCI | GTSAC | 1 cut(s) | 511 |
| PagI | TCATGA | 1 cut(s) | 133 |
| PfeI | GAWTC | 2 cut(s) | 99, 230 |
| PleI | GAGTC | 1 cut(s) | 43 |
| PluTI | GGCGCC | 1 cut(s) | 378 |
| PpsI | GAGTC | 1 cut(s) | 43 |
| PshBI | ATTAAT | 1 cut(s) | 425 |
| Psp124BI | GAGCTC | 2 cut(s) | 141, 499 |
| PspEI | GGTNACC | 2 cut(s) | 290, 511 |
| PspN4I | GGNNCC | 2 cut(s) | 317, 376 |
| PsuI | RGATCY | 1 cut(s) | 203 |
| RseI | CAYNNNNRTG | 2 cut(s) | 369, 399 |
| SacI | GAGCTC | 2 cut(s) | 141, 499 |
| SaqAI | TTAA | 1 cut(s) | 425 |
| Sau3AI | GATC | 6 cut(s) | 39, 120, 203, 262, 568, 580 |
| SchI | GAGTC | 1 cut(s) | 43 |
| SduI | GDGCHC | 2 cut(s) | 141, 499 |
| SetI | ASST | 9 cut(s) | 62, 131, 141, 151, 245, 292, 334, 499, 550 |
| SfoI | GGCGCC | 1 cut(s) | 376 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 369, 399 |
| Sse9I | AATT | 4 cut(s) | 196, 235, 271, 422 |
| SsiI | CCGC | 1 cut(s) | 516 |
| SspDI | GGCGCC | 1 cut(s) | 374 |
| SspMI | CTAG | 1 cut(s) | 584 |
| SstI | GAGCTC | 2 cut(s) | 141, 499 |
| TaaI | ACNGT | 1 cut(s) | 296 |
| TaiI | ACGT | 1 cut(s) | 334 |
| TaqI | TCGA | 6 cut(s) | 42, 97, 102, 200, 435, 457 |
| TasI | AATT | 4 cut(s) | 196, 235, 271, 422 |
| TfiI | GAWTC | 2 cut(s) | 99, 230 |
| Tru1I | TTAA | 1 cut(s) | 425 |
| Tru9I | TTAA | 1 cut(s) | 425 |
| TseFI | GTSAC | 1 cut(s) | 511 |
| Tsp45I | GTSAC | 1 cut(s) | 511 |
| TspDTI | ATGAA | 1 cut(s) | 122 |
| TspGWI | ACGGA | 3 cut(s) | 133, 196, 328 |
| VspI | ATTAAT | 1 cut(s) | 425 |
| XbaI | TCTAGA | 1 cut(s) | 583 |
| XmiI | GTMKAC | 1 cut(s) | 245 |
| XspI | CTAG | 1 cut(s) | 584 |