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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 453 |
| AciI | CCGC | 1 cut(s) | 145 |
| AclI | AACGTT | 1 cut(s) | 96 |
| AclWI | GGATC | 1 cut(s) | 405 |
| AcsI | RAATTY | 3 cut(s) | 200, 212, 437 |
| AfaI | GTAC | 1 cut(s) | 32 |
| AgsI | TTSAA | 5 cut(s) | 47, 80, 160, 442, 460 |
| AluBI | AGCT | 2 cut(s) | 346, 356 |
| AluI | AGCT | 2 cut(s) | 346, 356 |
| Alw21I | GWGCWC | 1 cut(s) | 348 |
| Alw26I | GTCTC | 1 cut(s) | 280 |
| AlwI | GGATC | 1 cut(s) | 405 |
| ApoI | RAATTY | 3 cut(s) | 200, 212, 437 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 189 |
| AspLEI | GCGC | 1 cut(s) | 455 |
| AspS9I | GGNCC | 1 cut(s) | 70 |
| AsuC2I | CCSGG | 1 cut(s) | 109 |
| AvaII | GGWCC | 1 cut(s) | 70 |
| BaeGI | GKGCMC | 1 cut(s) | 471 |
| BanII | GRGCYC | 1 cut(s) | 348 |
| BbsI | GAAGAC | 2 cut(s) | 57, 260 |
| Bbv12I | GWGCWC | 1 cut(s) | 348 |
| BccI | CCATC | 1 cut(s) | 126 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 299, 333 |
| BcnI | CCSGG | 1 cut(s) | 109 |
| BcoDI | GTCTC | 1 cut(s) | 280 |
| Bme1390I | CCNGG | 1 cut(s) | 109 |
| Bme18I | GGWCC | 1 cut(s) | 70 |
| BmgT120I | GGNCC | 1 cut(s) | 70 |
| BmiI | GGNNCC | 2 cut(s) | 71, 72 |
| BmrFI | CCNGG | 1 cut(s) | 109 |
| BpiI | GAAGAC | 2 cut(s) | 57, 260 |
| BpmI | CTGGAG | 1 cut(s) | 11 |
| BpuMI | CCSGG | 1 cut(s) | 109 |
| Bsa29I | ATCGAT | 1 cut(s) | 309 |
| Bse1I | ACTGG | 1 cut(s) | 28 |
| Bse3DI | GCAATG | 1 cut(s) | 246 |
| BseCI | ATCGAT | 1 cut(s) | 309 |
| BseGI | GGATG | 2 cut(s) | 22, 384 |
| BseMI | GCAATG | 1 cut(s) | 246 |
| BseNI | ACTGG | 1 cut(s) | 28 |
| BseSI | GKGCMC | 1 cut(s) | 471 |
| Bsh1236I | CGCG | 1 cut(s) | 453 |
| BshVI | ATCGAT | 1 cut(s) | 309 |
| BsiHKAI | GWGCWC | 1 cut(s) | 348 |
| BsiSI | CCGG | 1 cut(s) | 109 |
| BslFI | GGGAC | 1 cut(s) | 56 |
| BsmAI | GTCTC | 1 cut(s) | 280 |
| BsmBI | CGTCTC | 1 cut(s) | 280 |
| BsmFI | GGGAC | 1 cut(s) | 56 |
| Bsp1286I | GDGCHC | 2 cut(s) | 348, 471 |
| Bsp143I | GATC | 2 cut(s) | 228, 410 |
| BspACI | CCGC | 1 cut(s) | 145 |
| BspDI | ATCGAT | 1 cut(s) | 309 |
| BspFNI | CGCG | 1 cut(s) | 453 |
| BspHI | TCATGA | 1 cut(s) | 340 |
| BspLI | GGNNCC | 2 cut(s) | 71, 72 |
| BspPI | GGATC | 1 cut(s) | 405 |
| BsrDI | GCAATG | 1 cut(s) | 246 |
| BsrI | ACTGG | 1 cut(s) | 28 |
| BssMI | GATC | 2 cut(s) | 228, 410 |
| BstF5I | GGATG | 2 cut(s) | 22, 384 |
| BstFNI | CGCG | 1 cut(s) | 453 |
| BstHHI | GCGC | 1 cut(s) | 455 |
| BstKTI | GATC | 2 cut(s) | 231, 413 |
| BstMAI | GTCTC | 1 cut(s) | 280 |
| BstMBI | GATC | 2 cut(s) | 228, 410 |
| BstSCI | CCNGG | 1 cut(s) | 107 |
| BstSLI | GKGCMC | 1 cut(s) | 471 |
| BstUI | CGCG | 1 cut(s) | 453 |
| BstV2I | GAAGAC | 2 cut(s) | 57, 260 |
| BstX2I | RGATCY | 1 cut(s) | 410 |
| BstYI | RGATCY | 1 cut(s) | 410 |
| Bsu15I | ATCGAT | 1 cut(s) | 309 |
| BsuTUI | ATCGAT | 1 cut(s) | 309 |
| BtsCI | GGATG | 2 cut(s) | 22, 384 |
| CciI | TCATGA | 1 cut(s) | 340 |
| CfoI | GCGC | 1 cut(s) | 455 |
| Cfr13I | GGNCC | 1 cut(s) | 70 |
| ClaI | ATCGAT | 1 cut(s) | 309 |
| Csp6I | GTAC | 1 cut(s) | 31 |
| CviAII | CATG | 2 cut(s) | 341, 377 |
| CviJI | RGCY | 5 cut(s) | 64, 112, 141, 346, 356 |
| CviKI_1 | RGCY | 5 cut(s) | 64, 112, 141, 346, 356 |
| CviQI | GTAC | 1 cut(s) | 31 |
| DpnI | GATC | 2 cut(s) | 230, 412 |
| DpnII | GATC | 2 cut(s) | 228, 410 |
| Ecl136II | GAGCTC | 1 cut(s) | 346 |
| Eco24I | GRGCYC | 1 cut(s) | 348 |
| Eco47I | GGWCC | 1 cut(s) | 70 |
| Eco53kI | GAGCTC | 1 cut(s) | 346 |
| EcoICRI | GAGCTC | 1 cut(s) | 346 |
| EcoO109I | RGGNCCY | 1 cut(s) | 70 |
| EcoRI | GAATTC | 2 cut(s) | 212, 437 |
| EcoT38I | GRGCYC | 1 cut(s) | 348 |
| Esp3I | CGTCTC | 1 cut(s) | 280 |
| FaeI | CATG | 2 cut(s) | 344, 380 |
| FaqI | GGGAC | 1 cut(s) | 56 |
| FatI | CATG | 2 cut(s) | 340, 376 |
| FauNDI | CATATG | 1 cut(s) | 12 |
| FokI | GGATG | 2 cut(s) | 29, 371 |
| FriOI | GRGCYC | 1 cut(s) | 348 |
| GlaI | GCGC | 1 cut(s) | 454 |
| GsuI | CTGGAG | 1 cut(s) | 11 |
| HapII | CCGG | 1 cut(s) | 109 |
| HhaI | GCGC | 1 cut(s) | 455 |
| Hin1II | CATG | 2 cut(s) | 344, 380 |
| Hin6I | GCGC | 1 cut(s) | 453 |
| HinP1I | GCGC | 1 cut(s) | 453 |
| HinfI | GANTC | 5 cut(s) | 4, 20, 104, 256, 327 |
| HpaII | CCGG | 1 cut(s) | 109 |
| Hpy188I | TCNGA | 2 cut(s) | 184, 436 |
| Hpy188III | TCNNGA | 3 cut(s) | 116, 341, 408 |
| HpyAV | CCTTC | 2 cut(s) | 54, 277 |
| HpyCH4IV | ACGT | 1 cut(s) | 96 |
| HpyCH4V | TGCA | 2 cut(s) | 239, 320 |
| HpySE526I | ACGT | 1 cut(s) | 96 |
| Hsp92II | CATG | 2 cut(s) | 344, 380 |
| HspAI | GCGC | 1 cut(s) | 453 |
| KflI | GGGWCCC | 1 cut(s) | 70 |
| Kzo9I | GATC | 2 cut(s) | 228, 410 |
| LmnI | GCTCC | 2 cut(s) | 30, 353 |
| LpnPI | CCDG | 4 cut(s) | 41, 70, 122, 129 |
| MaeII | ACGT | 1 cut(s) | 96 |
| MaeIII | GTNAC | 1 cut(s) | 101 |
| MalI | GATC | 2 cut(s) | 230, 412 |
| MboI | GATC | 2 cut(s) | 228, 410 |
| MboII | GAAGA | 6 cut(s) | 59, 62, 92, 161, 265, 406 |
| MflI | RGATCY | 1 cut(s) | 410 |
| MhlI | GDGCHC | 2 cut(s) | 348, 471 |
| MluCI | AATT | 5 cut(s) | 200, 212, 403, 437, 442 |
| MlyI | GAGTC | 2 cut(s) | 98, 250 |
| MnlI | CCTC | 2 cut(s) | 152, 458 |
| MroXI | GAANNNNTTC | 1 cut(s) | 189 |
| MseI | TTAA | 3 cut(s) | 198, 206, 294 |
| MslI | CAYNNNNRTG | 3 cut(s) | 15, 125, 389 |
| MspI | CCGG | 1 cut(s) | 109 |
| MspR9I | CCNGG | 1 cut(s) | 109 |
| MvnI | CGCG | 1 cut(s) | 453 |
| NciI | CCSGG | 1 cut(s) | 109 |
| NdeI | CATATG | 1 cut(s) | 12 |
| NdeII | GATC | 2 cut(s) | 228, 410 |
| NlaIII | CATG | 2 cut(s) | 344, 380 |
| NlaIV | GGNNCC | 2 cut(s) | 71, 72 |
| NmuCI | GTSAC | 1 cut(s) | 101 |
| PagI | TCATGA | 1 cut(s) | 340 |
| PdmI | GAANNNNTTC | 1 cut(s) | 189 |
| PfeI | GAWTC | 2 cut(s) | 20, 327 |
| PleI | GAGTC | 2 cut(s) | 98, 250 |
| PpsI | GAGTC | 2 cut(s) | 98, 250 |
| PpuMI | RGGWCCY | 1 cut(s) | 70 |
| Psp124BI | GAGCTC | 1 cut(s) | 348 |
| Psp1406I | AACGTT | 1 cut(s) | 96 |
| Psp5II | RGGWCCY | 1 cut(s) | 70 |
| PspN4I | GGNNCC | 2 cut(s) | 71, 72 |
| PspPI | GGNCC | 1 cut(s) | 70 |
| PspPPI | RGGWCCY | 1 cut(s) | 70 |
| PsuI | RGATCY | 1 cut(s) | 410 |
| RsaI | GTAC | 1 cut(s) | 32 |
| RsaNI | GTAC | 1 cut(s) | 31 |
| RseI | CAYNNNNRTG | 3 cut(s) | 15, 125, 389 |
| SacI | GAGCTC | 1 cut(s) | 348 |
| SaqAI | TTAA | 3 cut(s) | 198, 206, 294 |
| Sau3AI | GATC | 2 cut(s) | 228, 410 |
| Sau96I | GGNCC | 1 cut(s) | 70 |
| SchI | GAGTC | 2 cut(s) | 98, 250 |
| ScrFI | CCNGG | 1 cut(s) | 109 |
| SduI | GDGCHC | 2 cut(s) | 348, 471 |
| SetI | ASST | 5 cut(s) | 99, 269, 338, 348, 358 |
| SinI | GGWCC | 1 cut(s) | 70 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 15, 125, 389 |
| Sse9I | AATT | 5 cut(s) | 200, 212, 403, 437, 442 |
| SsiI | CCGC | 1 cut(s) | 145 |
| SspI | AATATT | 1 cut(s) | 87 |
| SstI | GAGCTC | 1 cut(s) | 348 |
| StyD4I | CCNGG | 1 cut(s) | 107 |
| TaiI | ACGT | 1 cut(s) | 99 |
| TaqI | TCGA | 2 cut(s) | 309, 407 |
| TasI | AATT | 5 cut(s) | 200, 212, 403, 437, 442 |
| TfiI | GAWTC | 2 cut(s) | 20, 327 |
| Tru1I | TTAA | 3 cut(s) | 198, 206, 294 |
| Tru9I | TTAA | 3 cut(s) | 198, 206, 294 |
| TseFI | GTSAC | 1 cut(s) | 101 |
| Tsp45I | GTSAC | 1 cut(s) | 101 |
| TspDTI | ATGAA | 2 cut(s) | 329, 374 |
| TspGWI | ACGGA | 1 cut(s) | 403 |
| VpaK11BI | GGWCC | 1 cut(s) | 70 |
| XapI | RAATTY | 3 cut(s) | 200, 212, 437 |
| XmnI | GAANNNNTTC | 1 cut(s) | 189 |