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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 852 |
| AccI | GTMKAC | 1 cut(s) | 35 |
| AciI | CCGC | 2 cut(s) | 370, 652 |
| AcsI | RAATTY | 2 cut(s) | 305, 719 |
| AcuI | CTGAAG | 1 cut(s) | 189 |
| AcyI | GRCGYC | 1 cut(s) | 732 |
| AfaI | GTAC | 3 cut(s) | 346, 539, 792 |
| AgsI | TTSAA | 3 cut(s) | 259, 458, 667 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 31 |
| AhlI | ACTAGT | 1 cut(s) | 785 |
| AjiI | CACGTC | 3 cut(s) | 230, 427, 801 |
| AjnI | CCWGG | 2 cut(s) | 140, 420 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 579, 611 |
| AluBI | AGCT | 5 cut(s) | 320, 339, 446, 452, 769 |
| AluI | AGCT | 5 cut(s) | 320, 339, 446, 452, 769 |
| Alw21I | GWGCWC | 2 cut(s) | 139, 771 |
| Alw26I | GTCTC | 2 cut(s) | 583, 791 |
| Alw44I | GTGCAC | 1 cut(s) | 135 |
| Ama87I | CYCGRG | 1 cut(s) | 410 |
| AoxI | GGCC | 1 cut(s) | 143 |
| ApaLI | GTGCAC | 1 cut(s) | 135 |
| ApeKI | GCWGC | 1 cut(s) | 470 |
| ApoI | RAATTY | 2 cut(s) | 305, 719 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 696, 750 |
| AspLEI | GCGC | 1 cut(s) | 853 |
| AspS9I | GGNCC | 3 cut(s) | 144, 191, 217 |
| AsuC2I | CCSGG | 2 cut(s) | 290, 334 |
| AsuHPI | GGTGA | 1 cut(s) | 314 |
| AvaI | CYCGRG | 1 cut(s) | 410 |
| AvaII | GGWCC | 2 cut(s) | 191, 217 |
| BaeGI | GKGCMC | 1 cut(s) | 139 |
| BanII | GRGCYC | 1 cut(s) | 771 |
| BbsI | GAAGAC | 1 cut(s) | 564 |
| Bbv12I | GWGCWC | 2 cut(s) | 139, 771 |
| BbvI | GCAGC | 1 cut(s) | 482 |
| BccI | CCATC | 2 cut(s) | 633, 824 |
| BciT130I | CCWGG | 2 cut(s) | 142, 422 |
| BcnI | CCSGG | 2 cut(s) | 290, 334 |
| BcoDI | GTCTC | 2 cut(s) | 583, 791 |
| BcuI | ACTAGT | 1 cut(s) | 785 |
| BfaI | CTAG | 3 cut(s) | 417, 629, 786 |
| BfmI | CTRYAG | 3 cut(s) | 340, 387, 435 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 479 |
| BisI | GCNGC | 1 cut(s) | 471 |
| BlsI | GCNGC | 1 cut(s) | 472 |
| BmcAI | AGTACT | 1 cut(s) | 346 |
| Bme1390I | CCNGG | 4 cut(s) | 142, 290, 334, 422 |
| Bme18I | GGWCC | 2 cut(s) | 191, 217 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 31 |
| BmeT110I | CYCGRG | 1 cut(s) | 410 |
| BmgBI | CACGTC | 3 cut(s) | 230, 427, 801 |
| BmgT120I | GGNCC | 3 cut(s) | 144, 191, 217 |
| BmiI | GGNNCC | 3 cut(s) | 192, 218, 219 |
| BmrFI | CCNGG | 4 cut(s) | 142, 290, 334, 422 |
| BmsI | GCATC | 1 cut(s) | 385 |
| BpiI | GAAGAC | 1 cut(s) | 564 |
| BpmI | CTGGAG | 1 cut(s) | 518 |
| BpuEI | CTTGAG | 2 cut(s) | 365, 432 |
| BpuMI | CCSGG | 2 cut(s) | 290, 334 |
| BsaHI | GRCGYC | 1 cut(s) | 732 |
| BsaI | GGTCTC | 1 cut(s) | 583 |
| BsaJI | CCNNGG | 2 cut(s) | 114, 140 |
| BsaWI | WCCGGW | 3 cut(s) | 299, 312, 351 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 328, 358 |
| Bse118I | RCCGGY | 1 cut(s) | 263 |
| Bse1I | ACTGG | 2 cut(s) | 88, 535 |
| BseBI | CCWGG | 2 cut(s) | 142, 422 |
| BseDI | CCNNGG | 2 cut(s) | 114, 140 |
| BseGI | GGATG | 2 cut(s) | 501, 529 |
| BseMII | CTCAG | 1 cut(s) | 747 |
| BseNI | ACTGG | 2 cut(s) | 88, 535 |
| BseSI | GKGCMC | 1 cut(s) | 139 |
| BseXI | GCAGC | 1 cut(s) | 482 |
| BshFI | GGCC | 1 cut(s) | 145 |
| BsiHKAI | GWGCWC | 2 cut(s) | 139, 771 |
| BsiHKCI | CYCGRG | 1 cut(s) | 410 |
| BsiSI | CCGG | 7 cut(s) | 264, 279, 290, 300, 313, 333, 352 |
| BslFI | GGGAC | 3 cut(s) | 204, 230, 743 |
| BsmAI | GTCTC | 2 cut(s) | 583, 791 |
| BsmBI | CGTCTC | 1 cut(s) | 791 |
| BsmFI | GGGAC | 3 cut(s) | 204, 230, 743 |
| BsnI | GGCC | 1 cut(s) | 145 |
| Bso31I | GGTCTC | 1 cut(s) | 583 |
| BsoBI | CYCGRG | 1 cut(s) | 410 |
| Bsp1286I | GDGCHC | 2 cut(s) | 139, 771 |
| Bsp1407I | TGTACA | 1 cut(s) | 790 |
| Bsp19I | CCATGG | 1 cut(s) | 114 |
| BspACI | CCGC | 2 cut(s) | 370, 652 |
| BspANI | GGCC | 1 cut(s) | 145 |
| BspCNI | CTCAG | 1 cut(s) | 748 |
| BspLI | GGNNCC | 3 cut(s) | 192, 218, 219 |
| BspTNI | GGTCTC | 1 cut(s) | 583 |
| BsrFI | RCCGGY | 1 cut(s) | 263 |
| BsrGI | TGTACA | 1 cut(s) | 790 |
| BsrI | ACTGG | 2 cut(s) | 88, 535 |
| BssAI | RCCGGY | 1 cut(s) | 263 |
| BssECI | CCNNGG | 2 cut(s) | 114, 140 |
| BssNI | GRCGYC | 1 cut(s) | 732 |
| BssT1I | CCWWGG | 1 cut(s) | 114 |
| Bst2UI | CCWGG | 2 cut(s) | 142, 422 |
| Bst4CI | ACNGT | 4 cut(s) | 76, 247, 344, 436 |
| BstACI | GRCGYC | 1 cut(s) | 732 |
| BstAUI | TGTACA | 1 cut(s) | 790 |
| BstC8I | GCNNGC | 3 cut(s) | 135, 374, 444 |
| BstDEI | CTNAG | 2 cut(s) | 475, 756 |
| BstDSI | CCRYGG | 1 cut(s) | 114 |
| BstF5I | GGATG | 2 cut(s) | 501, 529 |
| BstHHI | GCGC | 1 cut(s) | 853 |
| BstMAI | GTCTC | 2 cut(s) | 583, 791 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 158, 458, 467, 479, 488 |
| BstNI | CCWGG | 2 cut(s) | 142, 422 |
| BstNSI | RCATGY | 1 cut(s) | 31 |
| BstSCI | CCNGG | 4 cut(s) | 140, 288, 332, 420 |
| BstSFI | CTRYAG | 3 cut(s) | 340, 387, 435 |
| BstSLI | GKGCMC | 1 cut(s) | 139 |
| BstV1I | GCAGC | 1 cut(s) | 482 |
| BstV2I | GAAGAC | 1 cut(s) | 564 |
| BsuRI | GGCC | 1 cut(s) | 145 |
| BtgI | CCRYGG | 1 cut(s) | 114 |
| BtrI | CACGTC | 3 cut(s) | 230, 427, 801 |
| BtsCI | GGATG | 2 cut(s) | 501, 529 |
| BtsI | GCAGTG | 3 cut(s) | 147, 171, 221 |
| BtsIMutI | CAGTG | 5 cut(s) | 72, 95, 147, 171, 221 |
| Cac8I | GCNNGC | 3 cut(s) | 135, 374, 444 |
| CfoI | GCGC | 1 cut(s) | 853 |
| Cfr10I | RCCGGY | 1 cut(s) | 263 |
| Cfr13I | GGNCC | 3 cut(s) | 144, 191, 217 |
| CseI | GACGC | 1 cut(s) | 740 |
| Csp6I | GTAC | 3 cut(s) | 345, 538, 791 |
| CviAII | CATG | 4 cut(s) | 28, 115, 794, 854 |
| CviQI | GTAC | 3 cut(s) | 345, 538, 791 |
| DdeI | CTNAG | 2 cut(s) | 475, 756 |
| DriI | GACNNNNNGTC | 1 cut(s) | 31 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 31 |
| EciI | GGCGGA | 1 cut(s) | 359 |
| Ecl136II | GAGCTC | 1 cut(s) | 769 |
| Eco130I | CCWWGG | 1 cut(s) | 114 |
| Eco24I | GRGCYC | 1 cut(s) | 771 |
| Eco31I | GGTCTC | 1 cut(s) | 583 |
| Eco32I | GATATC | 2 cut(s) | 367, 877 |
| Eco47I | GGWCC | 2 cut(s) | 191, 217 |
| Eco53kI | GAGCTC | 1 cut(s) | 769 |
| Eco57I | CTGAAG | 1 cut(s) | 189 |
| Eco88I | CYCGRG | 1 cut(s) | 410 |
| EcoICRI | GAGCTC | 1 cut(s) | 769 |
| EcoO109I | RGGNCCY | 2 cut(s) | 191, 217 |
| EcoRI | GAATTC | 1 cut(s) | 719 |
| EcoRII | CCWGG | 2 cut(s) | 140, 420 |
| EcoRV | GATATC | 2 cut(s) | 367, 877 |
| EcoT14I | CCWWGG | 1 cut(s) | 114 |
| EcoT38I | GRGCYC | 1 cut(s) | 771 |
| ErhI | CCWWGG | 1 cut(s) | 114 |
| Esp3I | CGTCTC | 1 cut(s) | 791 |
| FaeI | CATG | 4 cut(s) | 31, 118, 797, 857 |
| FaqI | GGGAC | 3 cut(s) | 204, 230, 743 |
| FatI | CATG | 4 cut(s) | 27, 114, 793, 853 |
| FauNDI | CATATG | 1 cut(s) | 519 |
| FblI | GTMKAC | 1 cut(s) | 35 |
| Fnu4HI | GCNGC | 1 cut(s) | 471 |
| FokI | GGATG | 2 cut(s) | 488, 536 |
| FriOI | GRGCYC | 1 cut(s) | 771 |
| Fsp4HI | GCNGC | 1 cut(s) | 471 |
| FspBI | CTAG | 3 cut(s) | 417, 629, 786 |
| FspI | TGCGCA | 1 cut(s) | 852 |
| GlaI | GCGC | 1 cut(s) | 852 |
| GluI | GCNGC | 1 cut(s) | 471 |
| GsuI | CTGGAG | 1 cut(s) | 518 |
| HaeIII | GGCC | 1 cut(s) | 145 |
| HapII | CCGG | 7 cut(s) | 264, 279, 290, 300, 313, 333, 352 |
| HgaI | GACGC | 1 cut(s) | 740 |
| HhaI | GCGC | 1 cut(s) | 853 |
| Hin1I | GRCGYC | 1 cut(s) | 732 |
| Hin1II | CATG | 4 cut(s) | 31, 118, 797, 857 |
| Hin6I | GCGC | 1 cut(s) | 851 |
| HinP1I | GCGC | 1 cut(s) | 851 |
| HincII | GTYRAC | 5 cut(s) | 36, 233, 243, 250, 269 |
| HindII | GTYRAC | 5 cut(s) | 36, 233, 243, 250, 269 |
| HindIII | AAGCTT | 1 cut(s) | 450 |
| HinfI | GANTC | 6 cut(s) | 84, 126, 393, 406, 527, 611 |
| HpaII | CCGG | 7 cut(s) | 264, 279, 290, 300, 313, 333, 352 |
| HphI | GGTGA | 1 cut(s) | 314 |
| Hpy166II | GTNNAC | 7 cut(s) | 36, 137, 233, 243, 250, 269, 791 |
| Hpy188I | TCNGA | 3 cut(s) | 208, 691, 745 |
| Hpy188III | TCNNGA | 5 cut(s) | 362, 410, 623, 677, 755 |
| Hpy8I | GTNNAC | 7 cut(s) | 36, 137, 233, 243, 250, 269, 791 |
| HpyAV | CCTTC | 1 cut(s) | 561 |
| HpyCH4III | ACNGT | 4 cut(s) | 76, 247, 344, 436 |
| HpyCH4IV | ACGT | 5 cut(s) | 229, 426, 603, 740, 800 |
| HpyCH4V | TGCA | 1 cut(s) | 137 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 158, 458, 467, 479, 488 |
| HpyF3I | CTNAG | 2 cut(s) | 475, 756 |
| HpySE526I | ACGT | 5 cut(s) | 229, 426, 603, 740, 800 |
| Hsp92I | GRCGYC | 1 cut(s) | 732 |
| Hsp92II | CATG | 4 cut(s) | 31, 118, 797, 857 |
| HspAI | GCGC | 1 cut(s) | 851 |
| KflI | GGGWCCC | 1 cut(s) | 217 |
| LmnI | GCTCC | 3 cut(s) | 336, 537, 893 |
| Lsp1109I | GCAGC | 1 cut(s) | 482 |
| LweI | GCATC | 1 cut(s) | 385 |
| MaeI | CTAG | 3 cut(s) | 417, 629, 786 |
| MaeII | ACGT | 5 cut(s) | 229, 426, 603, 740, 800 |
| MaeIII | GTNAC | 3 cut(s) | 55, 97, 608 |
| MboII | GAAGA | 3 cut(s) | 566, 569, 599 |
| MhlI | GDGCHC | 2 cut(s) | 139, 771 |
| MluCI | AATT | 5 cut(s) | 6, 305, 719, 778, 822 |
| MlyI | GAGTC | 1 cut(s) | 605 |
| MnlI | CCTC | 3 cut(s) | 472, 659, 745 |
| MroXI | GAANNNNTTC | 2 cut(s) | 696, 750 |
| MseI | TTAA | 3 cut(s) | 326, 705, 713 |
| MslI | CAYNNNNRTG | 2 cut(s) | 506, 522 |
| MspI | CCGG | 7 cut(s) | 264, 279, 290, 300, 313, 333, 352 |
| MspR9I | CCNGG | 4 cut(s) | 142, 290, 334, 422 |
| MvaI | CCWGG | 2 cut(s) | 142, 422 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 158, 458, 467, 479, 488 |
| NciI | CCSGG | 2 cut(s) | 290, 334 |
| NcoI | CCATGG | 1 cut(s) | 114 |
| NdeI | CATATG | 1 cut(s) | 519 |
| NlaIII | CATG | 4 cut(s) | 31, 118, 797, 857 |
| NlaIV | GGNNCC | 3 cut(s) | 192, 218, 219 |
| NmuCI | GTSAC | 3 cut(s) | 55, 97, 608 |
| NsbI | TGCGCA | 1 cut(s) | 852 |
| NspI | RCATGY | 1 cut(s) | 31 |
| PaeR7I | CTCGAG | 1 cut(s) | 410 |
| PdmI | GAANNNNTTC | 2 cut(s) | 696, 750 |
| PfeI | GAWTC | 5 cut(s) | 84, 126, 393, 406, 527 |
| PfoI | TCCNGGA | 1 cut(s) | 332 |
| PkrI | GCNGC | 1 cut(s) | 472 |
| PleI | GAGTC | 1 cut(s) | 605 |
| PpsI | GAGTC | 1 cut(s) | 605 |
| PpuMI | RGGWCCY | 2 cut(s) | 191, 217 |
| Psp124BI | GAGCTC | 1 cut(s) | 771 |
| Psp5II | RGGWCCY | 2 cut(s) | 191, 217 |
| Psp6I | CCWGG | 2 cut(s) | 140, 420 |
| PspGI | CCWGG | 2 cut(s) | 140, 420 |
| PspN4I | GGNNCC | 3 cut(s) | 192, 218, 219 |
| PspPI | GGNCC | 3 cut(s) | 144, 191, 217 |
| PspPPI | RGGWCCY | 2 cut(s) | 191, 217 |
| RsaI | GTAC | 3 cut(s) | 346, 539, 792 |
| RsaNI | GTAC | 3 cut(s) | 345, 538, 791 |
| RseI | CAYNNNNRTG | 2 cut(s) | 506, 522 |
| SacI | GAGCTC | 1 cut(s) | 771 |
| SalI | GTCGAC | 1 cut(s) | 34 |
| SaqAI | TTAA | 3 cut(s) | 326, 705, 713 |
| SatI | GCNGC | 1 cut(s) | 471 |
| Sau96I | GGNCC | 3 cut(s) | 144, 191, 217 |
| ScaI | AGTACT | 1 cut(s) | 346 |
| SchI | GAGTC | 1 cut(s) | 605 |
| ScrFI | CCNGG | 4 cut(s) | 142, 290, 334, 422 |
| SduI | GDGCHC | 2 cut(s) | 139, 771 |
| SfaNI | GCATC | 1 cut(s) | 385 |
| SfcI | CTRYAG | 3 cut(s) | 340, 387, 435 |
| Sfr274I | CTCGAG | 1 cut(s) | 410 |
| SinI | GGWCC | 2 cut(s) | 191, 217 |
| SlaI | CTCGAG | 1 cut(s) | 410 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 506, 522 |
| SmlI | CTYRAG | 3 cut(s) | 380, 410, 447 |
| SmoI | CTYRAG | 3 cut(s) | 380, 410, 447 |
| SpeI | ACTAGT | 1 cut(s) | 785 |
| Sse9I | AATT | 5 cut(s) | 6, 305, 719, 778, 822 |
| SsiI | CCGC | 2 cut(s) | 370, 652 |
| SspMI | CTAG | 3 cut(s) | 417, 629, 786 |
| SstI | GAGCTC | 1 cut(s) | 771 |
| StyD4I | CCNGG | 4 cut(s) | 140, 288, 332, 420 |
| StyI | CCWWGG | 1 cut(s) | 114 |
| TaaI | ACNGT | 4 cut(s) | 76, 247, 344, 436 |
| TaiI | ACGT | 5 cut(s) | 232, 429, 606, 743, 803 |
| TaqI | TCGA | 4 cut(s) | 35, 411, 585, 879 |
| TasI | AATT | 5 cut(s) | 6, 305, 719, 778, 822 |
| TatI | WGTACW | 2 cut(s) | 344, 790 |
| TfiI | GAWTC | 5 cut(s) | 84, 126, 393, 406, 527 |
| Tru1I | TTAA | 3 cut(s) | 326, 705, 713 |
| Tru9I | TTAA | 3 cut(s) | 326, 705, 713 |
| TscAI | CASTG | 5 cut(s) | 79, 95, 154, 178, 228 |
| TseFI | GTSAC | 3 cut(s) | 55, 97, 608 |
| TseI | GCWGC | 1 cut(s) | 470 |
| Tsp45I | GTSAC | 3 cut(s) | 55, 97, 608 |
| TspDTI | ATGAA | 3 cut(s) | 563, 567, 789 |
| TspGWI | ACGGA | 2 cut(s) | 596, 880 |
| TspRI | CASTG | 5 cut(s) | 79, 95, 154, 178, 228 |
| VneI | GTGCAC | 1 cut(s) | 135 |
| VpaK11BI | GGWCC | 2 cut(s) | 191, 217 |
| XapI | RAATTY | 2 cut(s) | 305, 719 |
| XceI | RCATGY | 1 cut(s) | 31 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 112 |
| XhoI | CTCGAG | 1 cut(s) | 410 |
| XmiI | GTMKAC | 1 cut(s) | 35 |
| XmnI | GAANNNNTTC | 2 cut(s) | 696, 750 |
| XspI | CTAG | 3 cut(s) | 417, 629, 786 |
| ZrmI | AGTACT | 1 cut(s) | 346 |