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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 597 |
| AccB1I | GGYRCC | 2 cut(s) | 710, 880 |
| AciI | CCGC | 2 cut(s) | 298, 1022 |
| AclWI | GGATC | 1 cut(s) | 488 |
| AcoI | YGGCCR | 2 cut(s) | 697, 867 |
| AcsI | RAATTY | 1 cut(s) | 39 |
| AdeI | CACNNNGTG | 1 cut(s) | 1062 |
| AfaI | GTAC | 1 cut(s) | 185 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 983 |
| AgsI | TTSAA | 4 cut(s) | 272, 313, 748, 918 |
| AjiI | CACGTC | 1 cut(s) | 73 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 225, 257 |
| AluBI | AGCT | 4 cut(s) | 98, 499, 509, 1003 |
| AluI | AGCT | 4 cut(s) | 98, 499, 509, 1003 |
| Alw21I | GWGCWC | 1 cut(s) | 1005 |
| Alw26I | GTCTC | 3 cut(s) | 229, 433, 556 |
| AlwI | GGATC | 1 cut(s) | 488 |
| Ama87I | CYCGRG | 1 cut(s) | 56 |
| AoxI | GGCC | 3 cut(s) | 30, 697, 867 |
| ApeKI | GCWGC | 1 cut(s) | 116 |
| ApoI | RAATTY | 1 cut(s) | 39 |
| AseI | ATTAAT | 1 cut(s) | 359 |
| AspLEI | GCGC | 1 cut(s) | 990 |
| AspS9I | GGNCC | 1 cut(s) | 599 |
| AsuHPI | GGTGA | 1 cut(s) | 1011 |
| AvaI | CYCGRG | 1 cut(s) | 56 |
| AvaII | GGWCC | 1 cut(s) | 599 |
| BalI | TGGCCA | 2 cut(s) | 699, 869 |
| BanI | GGYRCC | 2 cut(s) | 710, 880 |
| BanII | GRGCYC | 1 cut(s) | 1005 |
| Bbv12I | GWGCWC | 1 cut(s) | 1005 |
| BbvI | GCAGC | 1 cut(s) | 128 |
| BccI | CCATC | 5 cut(s) | 29, 279, 471, 738, 908 |
| BciVI | GTATCC | 2 cut(s) | 40, 984 |
| BcoDI | GTCTC | 3 cut(s) | 229, 433, 556 |
| BfaI | CTAG | 3 cut(s) | 63, 275, 1090 |
| BfmI | CTRYAG | 1 cut(s) | 471 |
| BfuI | GTATCC | 2 cut(s) | 40, 984 |
| BisI | GCNGC | 1 cut(s) | 117 |
| BlsI | GCNGC | 1 cut(s) | 118 |
| Bme18I | GGWCC | 1 cut(s) | 599 |
| BmeT110I | CYCGRG | 1 cut(s) | 56 |
| BmgBI | CACGTC | 1 cut(s) | 73 |
| BmgT120I | GGNCC | 1 cut(s) | 599 |
| BmiI | GGNNCC | 2 cut(s) | 712, 882 |
| BmsI | GCATC | 2 cut(s) | 31, 379 |
| BpmI | CTGGAG | 1 cut(s) | 164 |
| BpuEI | CTTGAG | 2 cut(s) | 11, 78 |
| BsaI | GGTCTC | 2 cut(s) | 229, 556 |
| BsaWI | WCCGGW | 1 cut(s) | 976 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 758, 788 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 983 |
| Bse1I | ACTGG | 1 cut(s) | 181 |
| BseGI | GGATG | 6 cut(s) | 175, 249, 482, 537, 730, 900 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 983 |
| BseMII | CTCAG | 3 cut(s) | 223, 762, 932 |
| BseNI | ACTGG | 1 cut(s) | 181 |
| BseXI | GCAGC | 1 cut(s) | 128 |
| BshFI | GGCC | 3 cut(s) | 32, 699, 869 |
| BshNI | GGYRCC | 2 cut(s) | 710, 880 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1005 |
| BsiHKCI | CYCGRG | 1 cut(s) | 56 |
| BsiSI | CCGG | 1 cut(s) | 977 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 983 |
| BsmAI | GTCTC | 3 cut(s) | 229, 433, 556 |
| BsnI | GGCC | 3 cut(s) | 32, 699, 869 |
| Bso31I | GGTCTC | 2 cut(s) | 229, 556 |
| BsoBI | CYCGRG | 1 cut(s) | 56 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1005 |
| Bsp143I | GATC | 3 cut(s) | 480, 1074, 1086 |
| BspACI | CCGC | 2 cut(s) | 298, 1022 |
| BspANI | GGCC | 3 cut(s) | 32, 699, 869 |
| BspCNI | CTCAG | 3 cut(s) | 222, 763, 933 |
| BspLI | GGNNCC | 2 cut(s) | 712, 882 |
| BspMAI | CTGCAG | 1 cut(s) | 475 |
| BspPI | GGATC | 1 cut(s) | 488 |
| BspT107I | GGYRCC | 2 cut(s) | 710, 880 |
| BspTNI | GGTCTC | 2 cut(s) | 229, 556 |
| BsrI | ACTGG | 1 cut(s) | 181 |
| BssMI | GATC | 3 cut(s) | 480, 1074, 1086 |
| Bst4CI | ACNGT | 2 cut(s) | 82, 554 |
| Bst6I | CTCTTC | 2 cut(s) | 652, 822 |
| BstDEI | CTNAG | 6 cut(s) | 121, 209, 723, 771, 893, 941 |
| BstEII | GGTNACC | 2 cut(s) | 626, 796 |
| BstF5I | GGATG | 6 cut(s) | 175, 249, 482, 537, 730, 900 |
| BstHHI | GCGC | 1 cut(s) | 990 |
| BstKTI | GATC | 3 cut(s) | 483, 1077, 1089 |
| BstMAI | GTCTC | 3 cut(s) | 229, 433, 556 |
| BstMBI | GATC | 3 cut(s) | 480, 1074, 1086 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 125, 134, 1030 |
| BstPI | GGTNACC | 2 cut(s) | 626, 796 |
| BstSFI | CTRYAG | 1 cut(s) | 471 |
| BstV1I | GCAGC | 1 cut(s) | 128 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 707, 877 |
| BsuI | GTATCC | 2 cut(s) | 40, 984 |
| BsuRI | GGCC | 3 cut(s) | 32, 699, 869 |
| BtgZI | GCGATG | 1 cut(s) | 407 |
| BtrI | CACGTC | 1 cut(s) | 73 |
| BtsCI | GGATG | 6 cut(s) | 175, 249, 482, 537, 730, 900 |
| BtsIMutI | CAGTG | 1 cut(s) | 519 |
| CfoI | GCGC | 1 cut(s) | 990 |
| Cfr13I | GGNCC | 1 cut(s) | 599 |
| CseI | GACGC | 2 cut(s) | 749, 919 |
| Csp6I | GTAC | 1 cut(s) | 184 |
| CviAII | CATG | 2 cut(s) | 701, 871 |
| CviQI | GTAC | 1 cut(s) | 184 |
| DdeI | CTNAG | 6 cut(s) | 121, 209, 723, 771, 893, 941 |
| DpnI | GATC | 3 cut(s) | 482, 1076, 1088 |
| DpnII | GATC | 3 cut(s) | 480, 1074, 1086 |
| DraIII | CACNNNGTG | 1 cut(s) | 1062 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 597 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 597 |
| EaeI | YGGCCR | 2 cut(s) | 697, 867 |
| Eam1104I | CTCTTC | 2 cut(s) | 652, 822 |
| EarI | CTCTTC | 2 cut(s) | 652, 822 |
| Ecl136II | GAGCTC | 1 cut(s) | 1003 |
| Eco24I | GRGCYC | 1 cut(s) | 1005 |
| Eco31I | GGTCTC | 2 cut(s) | 229, 556 |
| Eco32I | GATATC | 1 cut(s) | 382 |
| Eco47I | GGWCC | 1 cut(s) | 599 |
| Eco53kI | GAGCTC | 1 cut(s) | 1003 |
| Eco88I | CYCGRG | 1 cut(s) | 56 |
| Eco91I | GGTNACC | 2 cut(s) | 626, 796 |
| EcoICRI | GAGCTC | 1 cut(s) | 1003 |
| EcoO65I | GGTNACC | 2 cut(s) | 626, 796 |
| EcoRI | GAATTC | 1 cut(s) | 39 |
| EcoRV | GATATC | 1 cut(s) | 382 |
| EcoT38I | GRGCYC | 1 cut(s) | 1005 |
| FaeI | CATG | 2 cut(s) | 704, 874 |
| FatI | CATG | 2 cut(s) | 700, 870 |
| FauNDI | CATATG | 1 cut(s) | 165 |
| Fnu4HI | GCNGC | 1 cut(s) | 117 |
| FokI | GGATG | 6 cut(s) | 182, 236, 489, 524, 717, 887 |
| FriOI | GRGCYC | 1 cut(s) | 1005 |
| Fsp4HI | GCNGC | 1 cut(s) | 117 |
| FspBI | CTAG | 3 cut(s) | 63, 275, 1090 |
| GlaI | GCGC | 1 cut(s) | 989 |
| GluI | GCNGC | 1 cut(s) | 117 |
| GsuI | CTGGAG | 1 cut(s) | 164 |
| HaeIII | GGCC | 3 cut(s) | 32, 699, 869 |
| HapII | CCGG | 1 cut(s) | 977 |
| HgaI | GACGC | 2 cut(s) | 749, 919 |
| HhaI | GCGC | 1 cut(s) | 990 |
| Hin1II | CATG | 2 cut(s) | 704, 874 |
| Hin6I | GCGC | 1 cut(s) | 988 |
| HinP1I | GCGC | 1 cut(s) | 988 |
| HincII | GTYRAC | 2 cut(s) | 665, 835 |
| HindII | GTYRAC | 2 cut(s) | 665, 835 |
| HindIII | AAGCTT | 1 cut(s) | 96 |
| HinfI | GANTC | 4 cut(s) | 157, 257, 767, 937 |
| HpaII | CCGG | 1 cut(s) | 977 |
| HphI | GGTGA | 1 cut(s) | 1011 |
| Hpy166II | GTNNAC | 2 cut(s) | 665, 835 |
| Hpy188I | TCNGA | 3 cut(s) | 212, 772, 942 |
| Hpy188III | TCNNGA | 7 cut(s) | 44, 56, 269, 305, 561, 588, 1078 |
| Hpy8I | GTNNAC | 2 cut(s) | 665, 835 |
| HpyAV | CCTTC | 3 cut(s) | 207, 617, 787 |
| HpyCH4III | ACNGT | 2 cut(s) | 82, 554 |
| HpyCH4IV | ACGT | 4 cut(s) | 72, 592, 667, 837 |
| HpyCH4V | TGCA | 3 cut(s) | 22, 446, 473 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 125, 134, 1030 |
| HpyF3I | CTNAG | 6 cut(s) | 121, 209, 723, 771, 893, 941 |
| HpySE526I | ACGT | 4 cut(s) | 72, 592, 667, 837 |
| Hsp92II | CATG | 2 cut(s) | 704, 874 |
| HspAI | GCGC | 1 cut(s) | 988 |
| Kzo9I | GATC | 3 cut(s) | 480, 1074, 1086 |
| LmnI | GCTCC | 2 cut(s) | 183, 506 |
| LpnPI | CCDG | 9 cut(s) | 23, 29, 194, 459, 573, 579, 681, 851, 990 |
| Lsp1109I | GCAGC | 1 cut(s) | 128 |
| LweI | GCATC | 2 cut(s) | 31, 379 |
| MaeI | CTAG | 3 cut(s) | 63, 275, 1090 |
| MaeII | ACGT | 4 cut(s) | 72, 592, 667, 837 |
| MaeIII | GTNAC | 7 cut(s) | 5, 254, 466, 517, 626, 796, 1017 |
| MalI | GATC | 3 cut(s) | 482, 1076, 1088 |
| MboI | GATC | 3 cut(s) | 480, 1074, 1086 |
| MboII | GAAGA | 7 cut(s) | 212, 215, 245, 559, 669, 839, 1084 |
| MhlI | GDGCHC | 1 cut(s) | 1005 |
| MlsI | TGGCCA | 2 cut(s) | 699, 869 |
| MluCI | AATT | 6 cut(s) | 39, 51, 365, 556, 583, 1013 |
| MluNI | TGGCCA | 2 cut(s) | 699, 869 |
| MlyI | GAGTC | 4 cut(s) | 151, 251, 776, 946 |
| Mox20I | TGGCCA | 2 cut(s) | 699, 869 |
| MscI | TGGCCA | 2 cut(s) | 699, 869 |
| MseI | TTAA | 3 cut(s) | 351, 359, 492 |
| MslI | CAYNNNNRTG | 6 cut(s) | 168, 542, 705, 735, 875, 905 |
| Msp20I | TGGCCA | 2 cut(s) | 699, 869 |
| MspI | CCGG | 1 cut(s) | 977 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 125, 134, 1030 |
| NdeI | CATATG | 1 cut(s) | 165 |
| NdeII | GATC | 3 cut(s) | 480, 1074, 1086 |
| NlaIII | CATG | 2 cut(s) | 704, 874 |
| NlaIV | GGNNCC | 2 cut(s) | 712, 882 |
| NmuCI | GTSAC | 3 cut(s) | 254, 517, 1017 |
| PaeR7I | CTCGAG | 1 cut(s) | 56 |
| PkrI | GCNGC | 1 cut(s) | 118 |
| PleI | GAGTC | 4 cut(s) | 151, 251, 775, 945 |
| PpsI | GAGTC | 4 cut(s) | 151, 251, 775, 945 |
| PshBI | ATTAAT | 1 cut(s) | 359 |
| Psp124BI | GAGCTC | 1 cut(s) | 1005 |
| PspEI | GGTNACC | 2 cut(s) | 626, 796 |
| PspN4I | GGNNCC | 2 cut(s) | 712, 882 |
| PspPI | GGNCC | 1 cut(s) | 599 |
| PstI | CTGCAG | 1 cut(s) | 475 |
| RsaI | GTAC | 1 cut(s) | 185 |
| RsaNI | GTAC | 1 cut(s) | 184 |
| RseI | CAYNNNNRTG | 6 cut(s) | 168, 542, 705, 735, 875, 905 |
| SacI | GAGCTC | 1 cut(s) | 1005 |
| SaqAI | TTAA | 3 cut(s) | 351, 359, 492 |
| SatI | GCNGC | 1 cut(s) | 117 |
| Sau3AI | GATC | 3 cut(s) | 480, 1074, 1086 |
| Sau96I | GGNCC | 1 cut(s) | 599 |
| SchI | GAGTC | 4 cut(s) | 151, 251, 776, 946 |
| SduI | GDGCHC | 1 cut(s) | 1005 |
| SfaNI | GCATC | 2 cut(s) | 31, 379 |
| SfcI | CTRYAG | 1 cut(s) | 471 |
| Sfr274I | CTCGAG | 1 cut(s) | 56 |
| SinI | GGWCC | 1 cut(s) | 599 |
| SlaI | CTCGAG | 1 cut(s) | 56 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 168, 542, 705, 735, 875, 905 |
| SmlI | CTYRAG | 3 cut(s) | 26, 56, 93 |
| SmoI | CTYRAG | 3 cut(s) | 26, 56, 93 |
| Sse9I | AATT | 6 cut(s) | 39, 51, 365, 556, 583, 1013 |
| SsiI | CCGC | 2 cut(s) | 298, 1022 |
| SspMI | CTAG | 3 cut(s) | 63, 275, 1090 |
| SstI | GAGCTC | 1 cut(s) | 1005 |
| TaaI | ACNGT | 2 cut(s) | 82, 554 |
| TaiI | ACGT | 4 cut(s) | 75, 595, 670, 840 |
| TaqI | TCGA | 4 cut(s) | 57, 231, 335, 560 |
| TasI | AATT | 6 cut(s) | 39, 51, 365, 556, 583, 1013 |
| Tru1I | TTAA | 3 cut(s) | 351, 359, 492 |
| Tru9I | TTAA | 3 cut(s) | 351, 359, 492 |
| TscAI | CASTG | 1 cut(s) | 526 |
| TseFI | GTSAC | 3 cut(s) | 254, 517, 1017 |
| TseI | GCWGC | 1 cut(s) | 116 |
| Tsp45I | GTSAC | 3 cut(s) | 254, 517, 1017 |
| TspDTI | ATGAA | 4 cut(s) | 213, 377, 527, 968 |
| TspGWI | ACGGA | 1 cut(s) | 242 |
| TspRI | CASTG | 1 cut(s) | 526 |
| VpaK11BI | GGWCC | 1 cut(s) | 599 |
| VspI | ATTAAT | 1 cut(s) | 359 |
| XapI | RAATTY | 1 cut(s) | 39 |
| XhoI | CTCGAG | 1 cut(s) | 56 |
| XspI | CTAG | 3 cut(s) | 63, 275, 1090 |