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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 464 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 989 |
| AccIII | TCCGGA | 1 cut(s) | 544 |
| AciI | CCGC | 2 cut(s) | 256, 390 |
| AclWI | GGATC | 3 cut(s) | 4, 835, 981 |
| AfaI | GTAC | 2 cut(s) | 149, 279 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 157, 575, 646, 989 |
| AflIII | ACRYGT | 1 cut(s) | 694 |
| AgsI | TTSAA | 2 cut(s) | 62, 271 |
| AjiI | CACGTC | 1 cut(s) | 31 |
| AjnI | CCWGG | 1 cut(s) | 219 |
| AluBI | AGCT | 4 cut(s) | 50, 74, 457, 779 |
| AluI | AGCT | 4 cut(s) | 50, 74, 457, 779 |
| Alw21I | GWGCWC | 2 cut(s) | 676, 781 |
| Alw26I | GTCTC | 3 cut(s) | 391, 821, 980 |
| Alw44I | GTGCAC | 1 cut(s) | 672 |
| AlwI | GGATC | 3 cut(s) | 4, 835, 981 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 989 |
| Ama87I | CYCGRG | 1 cut(s) | 188 |
| Aor13HI | TCCGGA | 1 cut(s) | 544 |
| ApaLI | GTGCAC | 1 cut(s) | 672 |
| ApeKI | GCWGC | 3 cut(s) | 50, 53, 193 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 300 |
| AspS9I | GGNCC | 1 cut(s) | 626 |
| AsuHPI | GGTGA | 1 cut(s) | 953 |
| AvaI | CYCGRG | 1 cut(s) | 188 |
| AvaII | GGWCC | 1 cut(s) | 626 |
| BaeGI | GKGCMC | 2 cut(s) | 568, 676 |
| BanI | GGYRCC | 1 cut(s) | 464 |
| BanII | GRGCYC | 1 cut(s) | 781 |
| BbsI | GAAGAC | 3 cut(s) | 168, 371, 969 |
| Bbv12I | GWGCWC | 2 cut(s) | 676, 781 |
| BbvI | GCAGC | 3 cut(s) | 37, 40, 205 |
| BccI | CCATC | 3 cut(s) | 110, 237, 932 |
| BciT130I | CCWGG | 1 cut(s) | 221 |
| BcoDI | GTCTC | 3 cut(s) | 391, 821, 980 |
| BfaI | CTAG | 3 cut(s) | 227, 432, 519 |
| BisI | GCNGC | 3 cut(s) | 51, 54, 194 |
| BlsI | GCNGC | 3 cut(s) | 52, 55, 195 |
| Bme1390I | CCNGG | 1 cut(s) | 221 |
| Bme18I | GGWCC | 1 cut(s) | 626 |
| BmeT110I | CYCGRG | 1 cut(s) | 188 |
| BmgBI | CACGTC | 1 cut(s) | 31 |
| BmgT120I | GGNCC | 1 cut(s) | 626 |
| BmiI | GGNNCC | 3 cut(s) | 466, 532, 795 |
| BmrFI | CCNGG | 1 cut(s) | 221 |
| BmsI | GCATC | 2 cut(s) | 799, 869 |
| BpiI | GAAGAC | 3 cut(s) | 168, 371, 969 |
| BpmI | CTGGAG | 1 cut(s) | 706 |
| BsaBI | GATNNNNATC | 4 cut(s) | 356, 826, 942, 948 |
| BsaJI | CCNNGG | 4 cut(s) | 219, 525, 570, 682 |
| BsaWI | WCCGGW | 1 cut(s) | 544 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 157, 575, 646, 989 |
| Bse1I | ACTGG | 3 cut(s) | 723, 838, 994 |
| Bse8I | GATNNNNATC | 4 cut(s) | 356, 826, 942, 948 |
| BseAI | TCCGGA | 1 cut(s) | 544 |
| BseBI | CCWGG | 1 cut(s) | 221 |
| BseDI | CCNNGG | 4 cut(s) | 219, 525, 570, 682 |
| BseGI | GGATG | 1 cut(s) | 860 |
| BseJI | GATNNNNATC | 4 cut(s) | 356, 826, 942, 948 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 157, 575, 646, 989 |
| BseMII | CTCAG | 1 cut(s) | 832 |
| BseNI | ACTGG | 3 cut(s) | 723, 838, 994 |
| BseRI | GAGGAG | 2 cut(s) | 30, 771 |
| BseSI | GKGCMC | 2 cut(s) | 568, 676 |
| BseXI | GCAGC | 3 cut(s) | 37, 40, 205 |
| BseYI | CCCAGC | 1 cut(s) | 864 |
| BshNI | GGYRCC | 1 cut(s) | 464 |
| BsiHKAI | GWGCWC | 2 cut(s) | 676, 781 |
| BsiHKCI | CYCGRG | 1 cut(s) | 188 |
| BsiSI | CCGG | 1 cut(s) | 545 |
| BslFI | GGGAC | 1 cut(s) | 965 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 157, 575, 646, 989 |
| BsmAI | GTCTC | 3 cut(s) | 391, 821, 980 |
| BsmFI | GGGAC | 1 cut(s) | 965 |
| BsoBI | CYCGRG | 1 cut(s) | 188 |
| Bsp1286I | GDGCHC | 3 cut(s) | 568, 676, 781 |
| Bsp13I | TCCGGA | 1 cut(s) | 544 |
| Bsp143I | GATC | 8 cut(s) | 9, 357, 785, 827, 931, 943, 949, 973 |
| BspACI | CCGC | 2 cut(s) | 256, 390 |
| BspCNI | CTCAG | 1 cut(s) | 831 |
| BspEI | TCCGGA | 1 cut(s) | 544 |
| BspHI | TCATGA | 1 cut(s) | 111 |
| BspLI | GGNNCC | 3 cut(s) | 466, 532, 795 |
| BspPI | GGATC | 3 cut(s) | 4, 835, 981 |
| BspT107I | GGYRCC | 1 cut(s) | 464 |
| BsrI | ACTGG | 3 cut(s) | 723, 838, 994 |
| BssECI | CCNNGG | 4 cut(s) | 219, 525, 570, 682 |
| BssMI | GATC | 8 cut(s) | 9, 357, 785, 827, 931, 943, 949, 973 |
| BssT1I | CCWWGG | 1 cut(s) | 570 |
| Bst2UI | CCWGG | 1 cut(s) | 221 |
| Bst4CI | ACNGT | 2 cut(s) | 683, 758 |
| Bst6I | CTCTTC | 1 cut(s) | 695 |
| BstC8I | GCNNGC | 1 cut(s) | 672 |
| BstDEI | CTNAG | 5 cut(s) | 2, 232, 597, 818, 953 |
| BstDSI | CCRYGG | 2 cut(s) | 525, 682 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 155 |
| BstF5I | GGATG | 1 cut(s) | 860 |
| BstKTI | GATC | 8 cut(s) | 12, 360, 788, 830, 934, 946, 952, 976 |
| BstMAI | GTCTC | 3 cut(s) | 391, 821, 980 |
| BstMBI | GATC | 8 cut(s) | 9, 357, 785, 827, 931, 943, 949, 973 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 62, 71, 92, 776, 857, 908 |
| BstNI | CCWGG | 1 cut(s) | 221 |
| BstNSI | RCATGY | 2 cut(s) | 136, 855 |
| BstSCI | CCNGG | 1 cut(s) | 219 |
| BstSLI | GKGCMC | 2 cut(s) | 568, 676 |
| BstV1I | GCAGC | 3 cut(s) | 37, 40, 205 |
| BstV2I | GAAGAC | 3 cut(s) | 168, 371, 969 |
| BtgI | CCRYGG | 2 cut(s) | 525, 682 |
| BtrI | CACGTC | 1 cut(s) | 31 |
| BtsCI | GGATG | 1 cut(s) | 860 |
| BtsIMutI | CAGTG | 1 cut(s) | 342 |
| Cac8I | GCNNGC | 1 cut(s) | 672 |
| CaiI | CAGNNNCTG | 1 cut(s) | 989 |
| CciI | TCATGA | 1 cut(s) | 111 |
| Cfr13I | GGNCC | 1 cut(s) | 626 |
| CseI | GACGC | 1 cut(s) | 588 |
| Csp6I | GTAC | 2 cut(s) | 148, 278 |
| CviAII | CATG | 7 cut(s) | 112, 124, 133, 379, 469, 852, 919 |
| CviQI | GTAC | 2 cut(s) | 148, 278 |
| DdeI | CTNAG | 5 cut(s) | 2, 232, 597, 818, 953 |
| DpnI | GATC | 8 cut(s) | 11, 359, 787, 829, 933, 945, 951, 975 |
| DpnII | GATC | 8 cut(s) | 9, 357, 785, 827, 931, 943, 949, 973 |
| Eam1104I | CTCTTC | 1 cut(s) | 695 |
| EarI | CTCTTC | 1 cut(s) | 695 |
| Ecl136II | GAGCTC | 1 cut(s) | 779 |
| Eco130I | CCWWGG | 1 cut(s) | 570 |
| Eco24I | GRGCYC | 1 cut(s) | 781 |
| Eco47I | GGWCC | 1 cut(s) | 626 |
| Eco53kI | GAGCTC | 1 cut(s) | 779 |
| Eco88I | CYCGRG | 1 cut(s) | 188 |
| EcoICRI | GAGCTC | 1 cut(s) | 779 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 155 |
| EcoRII | CCWGG | 1 cut(s) | 219 |
| EcoT14I | CCWWGG | 1 cut(s) | 570 |
| EcoT38I | GRGCYC | 1 cut(s) | 781 |
| ErhI | CCWWGG | 1 cut(s) | 570 |
| FaeI | CATG | 7 cut(s) | 115, 127, 136, 382, 472, 855, 922 |
| FaqI | GGGAC | 1 cut(s) | 965 |
| FatI | CATG | 7 cut(s) | 111, 123, 132, 378, 468, 851, 918 |
| Fnu4HI | GCNGC | 3 cut(s) | 51, 54, 194 |
| FokI | GGATG | 1 cut(s) | 847 |
| FriOI | GRGCYC | 1 cut(s) | 781 |
| Fsp4HI | GCNGC | 3 cut(s) | 51, 54, 194 |
| FspBI | CTAG | 3 cut(s) | 227, 432, 519 |
| GluI | GCNGC | 3 cut(s) | 51, 54, 194 |
| GsaI | CCCAGC | 1 cut(s) | 868 |
| GsuI | CTGGAG | 1 cut(s) | 706 |
| HapII | CCGG | 1 cut(s) | 545 |
| HgaI | GACGC | 1 cut(s) | 588 |
| Hin1II | CATG | 7 cut(s) | 115, 127, 136, 382, 472, 855, 922 |
| HinfI | GANTC | 4 cut(s) | 215, 367, 435, 548 |
| HpaII | CCGG | 1 cut(s) | 545 |
| HphI | GGTGA | 1 cut(s) | 953 |
| Hpy166II | GTNNAC | 3 cut(s) | 332, 674, 692 |
| Hpy188I | TCNGA | 3 cut(s) | 295, 417, 821 |
| Hpy8I | GTNNAC | 3 cut(s) | 332, 674, 692 |
| HpyAV | CCTTC | 1 cut(s) | 644 |
| HpyCH4III | ACNGT | 2 cut(s) | 683, 758 |
| HpyCH4IV | ACGT | 5 cut(s) | 30, 207, 474, 694, 890 |
| HpyCH4V | TGCA | 3 cut(s) | 674, 875, 918 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 62, 71, 92, 776, 857, 908 |
| HpyF3I | CTNAG | 5 cut(s) | 2, 232, 597, 818, 953 |
| HpySE526I | ACGT | 5 cut(s) | 30, 207, 474, 694, 890 |
| Hsp92II | CATG | 7 cut(s) | 115, 127, 136, 382, 472, 855, 922 |
| Kpn2I | TCCGGA | 1 cut(s) | 544 |
| Kzo9I | GATC | 8 cut(s) | 9, 357, 785, 827, 931, 943, 949, 973 |
| LmnI | GCTCC | 4 cut(s) | 141, 586, 775, 784 |
| Lsp1109I | GCAGC | 3 cut(s) | 37, 40, 205 |
| LweI | GCATC | 2 cut(s) | 799, 869 |
| MaeI | CTAG | 3 cut(s) | 227, 432, 519 |
| MaeII | ACGT | 5 cut(s) | 30, 207, 474, 694, 890 |
| MaeIII | GTNAC | 1 cut(s) | 734 |
| MalI | GATC | 8 cut(s) | 11, 359, 787, 829, 933, 945, 951, 975 |
| MboI | GATC | 8 cut(s) | 9, 357, 785, 827, 931, 943, 949, 973 |
| MboII | GAAGA | 6 cut(s) | 173, 376, 517, 712, 941, 974 |
| MhlI | GDGCHC | 3 cut(s) | 568, 676, 781 |
| MluCI | AATT | 6 cut(s) | 289, 323, 459, 540, 553, 610 |
| MlyI | GAGTC | 3 cut(s) | 361, 429, 557 |
| MroI | TCCGGA | 1 cut(s) | 544 |
| MroXI | GAANNNNTTC | 1 cut(s) | 300 |
| MseI | TTAA | 1 cut(s) | 1003 |
| MslI | CAYNNNNRTG | 4 cut(s) | 110, 126, 500, 807 |
| MspI | CCGG | 1 cut(s) | 545 |
| MspR9I | CCNGG | 1 cut(s) | 221 |
| MvaI | CCWGG | 1 cut(s) | 221 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 62, 71, 92, 776, 857, 908 |
| NdeII | GATC | 8 cut(s) | 9, 357, 785, 827, 931, 943, 949, 973 |
| NlaIII | CATG | 7 cut(s) | 115, 127, 136, 382, 472, 855, 922 |
| NlaIV | GGNNCC | 3 cut(s) | 466, 532, 795 |
| NspI | RCATGY | 2 cut(s) | 136, 855 |
| PaeR7I | CTCGAG | 1 cut(s) | 188 |
| PagI | TCATGA | 1 cut(s) | 111 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 586 |
| PdmI | GAANNNNTTC | 1 cut(s) | 300 |
| PfeI | GAWTC | 1 cut(s) | 215 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 989 |
| PkrI | GCNGC | 3 cut(s) | 52, 55, 195 |
| PleI | GAGTC | 3 cut(s) | 361, 429, 556 |
| PpsI | GAGTC | 3 cut(s) | 361, 429, 556 |
| Psp124BI | GAGCTC | 1 cut(s) | 781 |
| Psp6I | CCWGG | 1 cut(s) | 219 |
| PspFI | CCCAGC | 1 cut(s) | 864 |
| PspGI | CCWGG | 1 cut(s) | 219 |
| PspN4I | GGNNCC | 3 cut(s) | 466, 532, 795 |
| PspPI | GGNCC | 1 cut(s) | 626 |
| PspXI | VCTCGAGB | 1 cut(s) | 188 |
| PstNI | CAGNNNCTG | 1 cut(s) | 989 |
| RsaI | GTAC | 2 cut(s) | 149, 279 |
| RsaNI | GTAC | 2 cut(s) | 148, 278 |
| RseI | CAYNNNNRTG | 4 cut(s) | 110, 126, 500, 807 |
| SacI | GAGCTC | 1 cut(s) | 781 |
| SaqAI | TTAA | 1 cut(s) | 1003 |
| SatI | GCNGC | 3 cut(s) | 51, 54, 194 |
| Sau3AI | GATC | 8 cut(s) | 9, 357, 785, 827, 931, 943, 949, 973 |
| Sau96I | GGNCC | 1 cut(s) | 626 |
| SchI | GAGTC | 3 cut(s) | 361, 429, 557 |
| ScrFI | CCNGG | 1 cut(s) | 221 |
| SduI | GDGCHC | 3 cut(s) | 568, 676, 781 |
| SfaNI | GCATC | 2 cut(s) | 799, 869 |
| Sfr274I | CTCGAG | 1 cut(s) | 188 |
| SinI | GGWCC | 1 cut(s) | 626 |
| SlaI | CTCGAG | 1 cut(s) | 188 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 110, 126, 500, 807 |
| SmlI | CTYRAG | 1 cut(s) | 188 |
| SmoI | CTYRAG | 1 cut(s) | 188 |
| Sse9I | AATT | 6 cut(s) | 289, 323, 459, 540, 553, 610 |
| SsiI | CCGC | 2 cut(s) | 256, 390 |
| SspI | AATATT | 1 cut(s) | 447 |
| SspMI | CTAG | 3 cut(s) | 227, 432, 519 |
| SstI | GAGCTC | 1 cut(s) | 781 |
| StyD4I | CCNGG | 1 cut(s) | 219 |
| StyI | CCWWGG | 1 cut(s) | 570 |
| TaaI | ACNGT | 2 cut(s) | 683, 758 |
| TaiI | ACGT | 5 cut(s) | 33, 210, 477, 697, 893 |
| TaqI | TCGA | 4 cut(s) | 189, 360, 784, 948 |
| TasI | AATT | 6 cut(s) | 289, 323, 459, 540, 553, 610 |
| TatI | WGTACW | 1 cut(s) | 277 |
| TfiI | GAWTC | 1 cut(s) | 215 |
| Tru1I | TTAA | 1 cut(s) | 1003 |
| Tru9I | TTAA | 1 cut(s) | 1003 |
| TscAI | CASTG | 1 cut(s) | 349 |
| TseI | GCWGC | 3 cut(s) | 50, 53, 193 |
| TspDTI | ATGAA | 3 cut(s) | 105, 140, 485 |
| TspGWI | ACGGA | 1 cut(s) | 200 |
| TspRI | CASTG | 1 cut(s) | 349 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 989 |
| VneI | GTGCAC | 1 cut(s) | 672 |
| VpaK11BI | GGWCC | 1 cut(s) | 626 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 155 |
| XbaI | TCTAGA | 2 cut(s) | 226, 518 |
| XceI | RCATGY | 2 cut(s) | 136, 855 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 174 |
| XhoI | CTCGAG | 1 cut(s) | 188 |
| XmnI | GAANNNNTTC | 1 cut(s) | 300 |
| XspI | CTAG | 3 cut(s) | 227, 432, 519 |