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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 372, 597 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 708 |
| AccB1I | GGYRCC | 1 cut(s) | 548 |
| AccII | CGCG | 3 cut(s) | 218, 648, 852 |
| AccIII | TCCGGA | 1 cut(s) | 628 |
| AciI | CCGC | 3 cut(s) | 340, 798, 816 |
| AclI | AACGTT | 1 cut(s) | 291 |
| AclWI | GGATC | 2 cut(s) | 795, 808 |
| AcoI | YGGCCR | 1 cut(s) | 415 |
| AcyI | GRCGYC | 1 cut(s) | 549 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 64, 241, 730 |
| AflII | CTTAAG | 1 cut(s) | 89 |
| AflIII | ACRYGT | 1 cut(s) | 778 |
| AgsI | TTSAA | 3 cut(s) | 22, 355, 489 |
| AluBI | AGCT | 5 cut(s) | 155, 179, 383, 541, 563 |
| AluI | AGCT | 5 cut(s) | 155, 179, 383, 541, 563 |
| Alw21I | GWGCWC | 2 cut(s) | 543, 760 |
| Alw26I | GTCTC | 2 cut(s) | 32, 475 |
| Alw44I | GTGCAC | 1 cut(s) | 756 |
| AlwI | GGATC | 2 cut(s) | 795, 808 |
| Aor13HI | TCCGGA | 1 cut(s) | 628 |
| AoxI | GGCC | 1 cut(s) | 415 |
| ApaLI | GTGCAC | 1 cut(s) | 756 |
| ApeKI | GCWGC | 1 cut(s) | 277 |
| AspLEI | GCGC | 6 cut(s) | 50, 81, 220, 551, 650, 854 |
| AspS9I | GGNCC | 2 cut(s) | 67, 710 |
| AvaII | GGWCC | 2 cut(s) | 67, 710 |
| BaeGI | GKGCMC | 1 cut(s) | 760 |
| BalI | TGGCCA | 1 cut(s) | 417 |
| BamHI | GGATCC | 1 cut(s) | 800 |
| BanI | GGYRCC | 1 cut(s) | 548 |
| BanII | GRGCYC | 1 cut(s) | 543 |
| BbsI | GAAGAC | 2 cut(s) | 252, 455 |
| Bbv12I | GWGCWC | 2 cut(s) | 543, 760 |
| BbvI | GCAGC | 1 cut(s) | 289 |
| BccI | CCATC | 4 cut(s) | 92, 122, 321, 397 |
| BciVI | GTATCC | 1 cut(s) | 47 |
| BcoDI | GTCTC | 2 cut(s) | 32, 475 |
| BfaI | CTAG | 4 cut(s) | 71, 126, 603, 746 |
| BfoI | RGCGCY | 1 cut(s) | 552 |
| BfrI | CTTAAG | 1 cut(s) | 89 |
| BfuI | GTATCC | 1 cut(s) | 47 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 860 |
| BisI | GCNGC | 1 cut(s) | 278 |
| BlsI | GCNGC | 1 cut(s) | 279 |
| Bme18I | GGWCC | 2 cut(s) | 67, 710 |
| BmgT120I | GGNCC | 2 cut(s) | 67, 710 |
| BmiI | GGNNCC | 5 cut(s) | 68, 550, 764, 802, 874 |
| BmsI | GCATC | 1 cut(s) | 531 |
| BpiI | GAAGAC | 2 cut(s) | 252, 455 |
| BpmI | CTGGAG | 1 cut(s) | 56 |
| BpuEI | CTTGAG | 1 cut(s) | 293 |
| BsaHI | GRCGYC | 1 cut(s) | 549 |
| BsaJI | CCNNGG | 2 cut(s) | 766, 811 |
| BsaWI | WCCGGW | 1 cut(s) | 628 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 64, 241, 730 |
| Bse1I | ACTGG | 2 cut(s) | 39, 49 |
| BseAI | TCCGGA | 1 cut(s) | 628 |
| BseDI | CCNNGG | 2 cut(s) | 766, 811 |
| BseGI | GGATG | 1 cut(s) | 114 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 64, 241, 730 |
| BseNI | ACTGG | 2 cut(s) | 39, 49 |
| BseSI | GKGCMC | 1 cut(s) | 760 |
| BseXI | GCAGC | 1 cut(s) | 289 |
| Bsh1236I | CGCG | 3 cut(s) | 218, 648, 852 |
| BshFI | GGCC | 1 cut(s) | 417 |
| BshNI | GGYRCC | 1 cut(s) | 548 |
| BsiHKAI | GWGCWC | 2 cut(s) | 543, 760 |
| BsiSI | CCGG | 1 cut(s) | 629 |
| BslFI | GGGAC | 1 cut(s) | 704 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 64, 241, 730 |
| BsmAI | GTCTC | 2 cut(s) | 32, 475 |
| BsmBI | CGTCTC | 1 cut(s) | 475 |
| BsmFI | GGGAC | 1 cut(s) | 704 |
| BsmI | GAATGC | 1 cut(s) | 517 |
| BsnI | GGCC | 1 cut(s) | 417 |
| Bsp1286I | GDGCHC | 2 cut(s) | 543, 760 |
| Bsp13I | TCCGGA | 1 cut(s) | 628 |
| Bsp143I | GATC | 2 cut(s) | 800, 864 |
| Bsp19I | CCATGG | 1 cut(s) | 811 |
| BspACI | CCGC | 3 cut(s) | 340, 798, 816 |
| BspANI | GGCC | 1 cut(s) | 417 |
| BspEI | TCCGGA | 1 cut(s) | 628 |
| BspFNI | CGCG | 3 cut(s) | 218, 648, 852 |
| BspHI | TCATGA | 1 cut(s) | 195 |
| BspLI | GGNNCC | 5 cut(s) | 68, 550, 764, 802, 874 |
| BspPI | GGATC | 2 cut(s) | 795, 808 |
| BspQI | GCTCTTC | 1 cut(s) | 390 |
| BspT107I | GGYRCC | 1 cut(s) | 548 |
| BspTI | CTTAAG | 1 cut(s) | 89 |
| BsrI | ACTGG | 2 cut(s) | 39, 49 |
| BssECI | CCNNGG | 2 cut(s) | 766, 811 |
| BssMI | GATC | 2 cut(s) | 800, 864 |
| BssNI | GRCGYC | 1 cut(s) | 549 |
| BssT1I | CCWWGG | 1 cut(s) | 811 |
| Bst4CI | ACNGT | 2 cut(s) | 160, 767 |
| Bst6I | CTCTTC | 2 cut(s) | 390, 779 |
| BstACI | GRCGYC | 1 cut(s) | 549 |
| BstAFI | CTTAAG | 1 cut(s) | 89 |
| BstC8I | GCNNGC | 1 cut(s) | 153 |
| BstDEI | CTNAG | 2 cut(s) | 618, 681 |
| BstDSI | CCRYGG | 2 cut(s) | 766, 811 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 239 |
| BstF5I | GGATG | 1 cut(s) | 114 |
| BstFNI | CGCG | 3 cut(s) | 218, 648, 852 |
| BstH2I | RGCGCY | 1 cut(s) | 552 |
| BstHHI | GCGC | 6 cut(s) | 50, 81, 220, 551, 650, 854 |
| BstKTI | GATC | 2 cut(s) | 803, 867 |
| BstMAI | GTCTC | 2 cut(s) | 32, 475 |
| BstMBI | GATC | 2 cut(s) | 800, 864 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 860 |
| BstSLI | GKGCMC | 1 cut(s) | 760 |
| BstUI | CGCG | 3 cut(s) | 218, 648, 852 |
| BstV1I | GCAGC | 1 cut(s) | 289 |
| BstV2I | GAAGAC | 2 cut(s) | 252, 455 |
| BstX2I | RGATCY | 1 cut(s) | 800 |
| BstYI | RGATCY | 1 cut(s) | 800 |
| BsuI | GTATCC | 1 cut(s) | 47 |
| BsuRI | GGCC | 1 cut(s) | 417 |
| BtgI | CCRYGG | 2 cut(s) | 766, 811 |
| BtgZI | GCGATG | 1 cut(s) | 340 |
| BtsCI | GGATG | 1 cut(s) | 114 |
| BtsIMutI | CAGTG | 1 cut(s) | 32 |
| Cac8I | GCNNGC | 1 cut(s) | 153 |
| CciI | TCATGA | 1 cut(s) | 195 |
| CfoI | GCGC | 6 cut(s) | 50, 81, 220, 551, 650, 854 |
| Cfr13I | GGNCC | 2 cut(s) | 67, 710 |
| CseI | GACGC | 1 cut(s) | 528 |
| CviAII | CATG | 4 cut(s) | 196, 208, 553, 812 |
| DdeI | CTNAG | 2 cut(s) | 618, 681 |
| DinI | GGCGCC | 1 cut(s) | 550 |
| DpnI | GATC | 2 cut(s) | 802, 866 |
| DpnII | GATC | 2 cut(s) | 800, 864 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 708 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 708 |
| EaeI | YGGCCR | 1 cut(s) | 415 |
| Eam1104I | CTCTTC | 2 cut(s) | 390, 779 |
| EarI | CTCTTC | 2 cut(s) | 390, 779 |
| EciI | GGCGGA | 1 cut(s) | 813 |
| Ecl136II | GAGCTC | 1 cut(s) | 541 |
| Eco130I | CCWWGG | 1 cut(s) | 811 |
| Eco24I | GRGCYC | 1 cut(s) | 543 |
| Eco47I | GGWCC | 2 cut(s) | 67, 710 |
| Eco53kI | GAGCTC | 1 cut(s) | 541 |
| EcoICRI | GAGCTC | 1 cut(s) | 541 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 239 |
| EcoO109I | RGGNCCY | 1 cut(s) | 67 |
| EcoT14I | CCWWGG | 1 cut(s) | 811 |
| EcoT38I | GRGCYC | 1 cut(s) | 543 |
| EgeI | GGCGCC | 1 cut(s) | 550 |
| EheI | GGCGCC | 1 cut(s) | 550 |
| ErhI | CCWWGG | 1 cut(s) | 811 |
| Esp3I | CGTCTC | 1 cut(s) | 475 |
| FaeI | CATG | 4 cut(s) | 199, 211, 556, 815 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 8, 40 |
| FaqI | GGGAC | 1 cut(s) | 704 |
| FatI | CATG | 4 cut(s) | 195, 207, 552, 811 |
| Fnu4HI | GCNGC | 1 cut(s) | 278 |
| FokI | GGATG | 1 cut(s) | 101 |
| FriOI | GRGCYC | 1 cut(s) | 543 |
| Fsp4HI | GCNGC | 1 cut(s) | 278 |
| FspBI | CTAG | 4 cut(s) | 71, 126, 603, 746 |
| GlaI | GCGC | 6 cut(s) | 49, 80, 219, 550, 649, 853 |
| GluI | GCNGC | 1 cut(s) | 278 |
| GsuI | CTGGAG | 1 cut(s) | 56 |
| HaeII | RGCGCY | 1 cut(s) | 552 |
| HaeIII | GGCC | 1 cut(s) | 417 |
| HapII | CCGG | 1 cut(s) | 629 |
| HgaI | GACGC | 1 cut(s) | 528 |
| HhaI | GCGC | 6 cut(s) | 50, 81, 220, 551, 650, 854 |
| Hin1I | GRCGYC | 1 cut(s) | 549 |
| Hin1II | CATG | 4 cut(s) | 199, 211, 556, 815 |
| Hin6I | GCGC | 6 cut(s) | 48, 79, 218, 549, 648, 852 |
| HinP1I | GCGC | 6 cut(s) | 48, 79, 218, 549, 648, 852 |
| HincII | GTYRAC | 1 cut(s) | 776 |
| HindII | GTYRAC | 1 cut(s) | 776 |
| HinfI | GANTC | 2 cut(s) | 299, 632 |
| HpaII | CCGG | 1 cut(s) | 629 |
| Hpy166II | GTNNAC | 2 cut(s) | 758, 776 |
| Hpy188I | TCNGA | 2 cut(s) | 501, 808 |
| Hpy188III | TCNNGA | 6 cut(s) | 107, 196, 296, 311, 629, 699 |
| Hpy8I | GTNNAC | 2 cut(s) | 758, 776 |
| HpyAV | CCTTC | 1 cut(s) | 728 |
| HpyCH4III | ACNGT | 2 cut(s) | 160, 767 |
| HpyCH4IV | ACGT | 4 cut(s) | 135, 291, 558, 778 |
| HpyCH4V | TGCA | 2 cut(s) | 515, 758 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 860 |
| HpyF3I | CTNAG | 2 cut(s) | 618, 681 |
| HpySE526I | ACGT | 4 cut(s) | 135, 291, 558, 778 |
| Hsp92I | GRCGYC | 1 cut(s) | 549 |
| Hsp92II | CATG | 4 cut(s) | 199, 211, 556, 815 |
| HspAI | GCGC | 6 cut(s) | 48, 79, 218, 549, 648, 852 |
| KasI | GGCGCC | 1 cut(s) | 548 |
| Kpn2I | TCCGGA | 1 cut(s) | 628 |
| Kzo9I | GATC | 2 cut(s) | 800, 864 |
| LguI | GCTCTTC | 1 cut(s) | 390 |
| LmnI | GCTCC | 3 cut(s) | 225, 670, 872 |
| Lsp1109I | GCAGC | 1 cut(s) | 289 |
| LweI | GCATC | 1 cut(s) | 531 |
| MaeI | CTAG | 4 cut(s) | 71, 126, 603, 746 |
| MaeII | ACGT | 4 cut(s) | 135, 291, 558, 778 |
| MaeIII | GTNAC | 2 cut(s) | 5, 818 |
| MalI | GATC | 2 cut(s) | 802, 866 |
| MboI | GATC | 2 cut(s) | 800, 864 |
| MboII | GAAGA | 6 cut(s) | 257, 377, 454, 460, 601, 796 |
| MflI | RGATCY | 1 cut(s) | 800 |
| MhlI | GDGCHC | 2 cut(s) | 543, 760 |
| MlsI | TGGCCA | 1 cut(s) | 417 |
| MluCI | AATT | 3 cut(s) | 189, 592, 694 |
| MluNI | TGGCCA | 1 cut(s) | 417 |
| Mly113I | GGCGCC | 1 cut(s) | 549 |
| MlyI | GAGTC | 1 cut(s) | 641 |
| MmeI | TCCRAC | 2 cut(s) | 145, 831 |
| MnlI | CCTC | 8 cut(s) | 235, 245, 347, 653, 724, 764, 788, 814 |
| Mox20I | TGGCCA | 1 cut(s) | 417 |
| MroI | TCCGGA | 1 cut(s) | 628 |
| MscI | TGGCCA | 1 cut(s) | 417 |
| MseI | TTAA | 1 cut(s) | 90 |
| Msp20I | TGGCCA | 1 cut(s) | 417 |
| MspCI | CTTAAG | 1 cut(s) | 89 |
| MspI | CCGG | 1 cut(s) | 629 |
| Mva1269I | GAATGC | 1 cut(s) | 517 |
| MvnI | CGCG | 3 cut(s) | 218, 648, 852 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 860 |
| NarI | GGCGCC | 1 cut(s) | 549 |
| NcoI | CCATGG | 1 cut(s) | 811 |
| NdeII | GATC | 2 cut(s) | 800, 864 |
| NlaIII | CATG | 4 cut(s) | 199, 211, 556, 815 |
| NlaIV | GGNNCC | 5 cut(s) | 68, 550, 764, 802, 874 |
| PagI | TCATGA | 1 cut(s) | 195 |
| PciSI | GCTCTTC | 1 cut(s) | 390 |
| PctI | GAATGC | 1 cut(s) | 517 |
| PfeI | GAWTC | 1 cut(s) | 299 |
| PkrI | GCNGC | 1 cut(s) | 279 |
| PleI | GAGTC | 1 cut(s) | 640 |
| PluTI | GGCGCC | 1 cut(s) | 552 |
| PpsI | GAGTC | 1 cut(s) | 640 |
| PpuMI | RGGWCCY | 1 cut(s) | 67 |
| PsiI | TTATAA | 2 cut(s) | 372, 597 |
| Psp124BI | GAGCTC | 1 cut(s) | 543 |
| Psp1406I | AACGTT | 1 cut(s) | 291 |
| Psp5II | RGGWCCY | 1 cut(s) | 67 |
| PspN4I | GGNNCC | 5 cut(s) | 68, 550, 764, 802, 874 |
| PspPI | GGNCC | 2 cut(s) | 67, 710 |
| PspPPI | RGGWCCY | 1 cut(s) | 67 |
| PsuI | RGATCY | 1 cut(s) | 800 |
| SacI | GAGCTC | 1 cut(s) | 543 |
| SapI | GCTCTTC | 1 cut(s) | 390 |
| SaqAI | TTAA | 1 cut(s) | 90 |
| SatI | GCNGC | 1 cut(s) | 278 |
| Sau3AI | GATC | 2 cut(s) | 800, 864 |
| Sau96I | GGNCC | 2 cut(s) | 67, 710 |
| SchI | GAGTC | 1 cut(s) | 641 |
| SduI | GDGCHC | 2 cut(s) | 543, 760 |
| SfaNI | GCATC | 1 cut(s) | 531 |
| SfoI | GGCGCC | 1 cut(s) | 550 |
| SinI | GGWCC | 2 cut(s) | 67, 710 |
| SmlI | CTYRAG | 2 cut(s) | 89, 272 |
| SmoI | CTYRAG | 2 cut(s) | 89, 272 |
| Sse9I | AATT | 3 cut(s) | 189, 592, 694 |
| SsiI | CCGC | 3 cut(s) | 340, 798, 816 |
| SspDI | GGCGCC | 1 cut(s) | 548 |
| SspI | AATATT | 1 cut(s) | 580 |
| SspMI | CTAG | 4 cut(s) | 71, 126, 603, 746 |
| SstI | GAGCTC | 1 cut(s) | 543 |
| StyI | CCWWGG | 1 cut(s) | 811 |
| TaaI | ACNGT | 2 cut(s) | 160, 767 |
| TaiI | ACGT | 4 cut(s) | 138, 294, 561, 781 |
| TaqI | TCGA | 1 cut(s) | 377 |
| TasI | AATT | 3 cut(s) | 189, 592, 694 |
| TfiI | GAWTC | 1 cut(s) | 299 |
| Tru1I | TTAA | 1 cut(s) | 90 |
| Tru9I | TTAA | 1 cut(s) | 90 |
| TscAI | CASTG | 1 cut(s) | 39 |
| TseI | GCWGC | 1 cut(s) | 277 |
| TspDTI | ATGAA | 2 cut(s) | 224, 569 |
| TspGWI | ACGGA | 1 cut(s) | 775 |
| TspRI | CASTG | 1 cut(s) | 39 |
| Vha464I | CTTAAG | 1 cut(s) | 89 |
| VneI | GTGCAC | 1 cut(s) | 756 |
| VpaK11BI | GGWCC | 2 cut(s) | 67, 710 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 239 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 258 |
| XspI | CTAG | 4 cut(s) | 71, 126, 603, 746 |