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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 177 |
| AccB1I | GGYRCC | 1 cut(s) | 353 |
| AccII | CGCG | 2 cut(s) | 23, 453 |
| AciI | CCGC | 1 cut(s) | 145 |
| AcoI | YGGCCR | 1 cut(s) | 220 |
| AcsI | RAATTY | 1 cut(s) | 543 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 46, 534 |
| AgsI | TTSAA | 2 cut(s) | 160, 294 |
| AluBI | AGCT | 5 cut(s) | 64, 85, 188, 346, 368 |
| AluI | AGCT | 5 cut(s) | 64, 85, 188, 346, 368 |
| Alw21I | GWGCWC | 1 cut(s) | 348 |
| Alw26I | GTCTC | 1 cut(s) | 280 |
| AoxI | GGCC | 1 cut(s) | 220 |
| ApeKI | GCWGC | 1 cut(s) | 82 |
| ApoI | RAATTY | 1 cut(s) | 543 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 189 |
| AspLEI | GCGC | 2 cut(s) | 25, 455 |
| BalI | TGGCCA | 1 cut(s) | 222 |
| BanI | GGYRCC | 1 cut(s) | 353 |
| BanII | GRGCYC | 1 cut(s) | 348 |
| BbsI | GAAGAC | 2 cut(s) | 57, 260 |
| Bbv12I | GWGCWC | 1 cut(s) | 348 |
| BbvI | GCAGC | 1 cut(s) | 94 |
| BccI | CCATC | 2 cut(s) | 126, 202 |
| BcoDI | GTCTC | 1 cut(s) | 280 |
| BfaI | CTAG | 2 cut(s) | 408, 550 |
| BfmI | CTRYAG | 1 cut(s) | 445 |
| BisI | GCNGC | 1 cut(s) | 83 |
| BlsI | GCNGC | 1 cut(s) | 84 |
| BmiI | GGNNCC | 1 cut(s) | 355 |
| BmsI | GCATC | 1 cut(s) | 458 |
| BpiI | GAAGAC | 2 cut(s) | 57, 260 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 467, 499 |
| BpuEI | CTTGAG | 1 cut(s) | 98 |
| BsaJI | CCNNGG | 1 cut(s) | 414 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 46, 534 |
| Bse3DI | GCAATG | 1 cut(s) | 100 |
| BseDI | CCNNGG | 1 cut(s) | 414 |
| BseGI | GGATG | 1 cut(s) | 473 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 46, 534 |
| BseMI | GCAATG | 1 cut(s) | 100 |
| BseXI | GCAGC | 1 cut(s) | 94 |
| Bsh1236I | CGCG | 2 cut(s) | 23, 453 |
| BshFI | GGCC | 1 cut(s) | 222 |
| BshNI | GGYRCC | 1 cut(s) | 353 |
| BsiHKAI | GWGCWC | 1 cut(s) | 348 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 46, 534 |
| BsmAI | GTCTC | 1 cut(s) | 280 |
| BsmBI | CGTCTC | 1 cut(s) | 280 |
| BsmI | GAATGC | 1 cut(s) | 322 |
| BsnI | GGCC | 1 cut(s) | 222 |
| Bsp1286I | GDGCHC | 1 cut(s) | 348 |
| BspACI | CCGC | 1 cut(s) | 145 |
| BspANI | GGCC | 1 cut(s) | 222 |
| BspFNI | CGCG | 2 cut(s) | 23, 453 |
| BspHI | TCATGA | 1 cut(s) | 340 |
| BspLI | GGNNCC | 1 cut(s) | 355 |
| BspQI | GCTCTTC | 1 cut(s) | 195 |
| BspT107I | GGYRCC | 1 cut(s) | 353 |
| BsrDI | GCAATG | 1 cut(s) | 100 |
| BssECI | CCNNGG | 1 cut(s) | 414 |
| Bst6I | CTCTTC | 1 cut(s) | 195 |
| BstDEI | CTNAG | 2 cut(s) | 423, 486 |
| BstDSI | CCRYGG | 1 cut(s) | 414 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 44 |
| BstF5I | GGATG | 1 cut(s) | 473 |
| BstFNI | CGCG | 2 cut(s) | 23, 453 |
| BstHHI | GCGC | 2 cut(s) | 25, 455 |
| BstMAI | GTCTC | 1 cut(s) | 280 |
| BstSFI | CTRYAG | 1 cut(s) | 445 |
| BstUI | CGCG | 2 cut(s) | 23, 453 |
| BstV1I | GCAGC | 1 cut(s) | 94 |
| BstV2I | GAAGAC | 2 cut(s) | 57, 260 |
| BsuRI | GGCC | 1 cut(s) | 222 |
| BtgI | CCRYGG | 1 cut(s) | 414 |
| BtgZI | GCGATG | 1 cut(s) | 145 |
| BtsCI | GGATG | 1 cut(s) | 473 |
| CciI | TCATGA | 1 cut(s) | 340 |
| CfoI | GCGC | 2 cut(s) | 25, 455 |
| CseI | GACGC | 1 cut(s) | 29 |
| CviAII | CATG | 3 cut(s) | 13, 341, 358 |
| CviJI | RGCY | 8 cut(s) | 64, 85, 141, 188, 222, 227, 346, 368 |
| CviKI_1 | RGCY | 8 cut(s) | 64, 85, 141, 188, 222, 227, 346, 368 |
| DdeI | CTNAG | 2 cut(s) | 423, 486 |
| EaeI | YGGCCR | 1 cut(s) | 220 |
| Eam1104I | CTCTTC | 1 cut(s) | 195 |
| EarI | CTCTTC | 1 cut(s) | 195 |
| Ecl136II | GAGCTC | 1 cut(s) | 346 |
| Eco24I | GRGCYC | 1 cut(s) | 348 |
| Eco53kI | GAGCTC | 1 cut(s) | 346 |
| EcoICRI | GAGCTC | 1 cut(s) | 346 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 44 |
| EcoT38I | GRGCYC | 1 cut(s) | 348 |
| Esp3I | CGTCTC | 1 cut(s) | 280 |
| FaeI | CATG | 3 cut(s) | 16, 344, 361 |
| FatI | CATG | 3 cut(s) | 12, 340, 357 |
| Fnu4HI | GCNGC | 1 cut(s) | 83 |
| FokI | GGATG | 1 cut(s) | 480 |
| FriOI | GRGCYC | 1 cut(s) | 348 |
| Fsp4HI | GCNGC | 1 cut(s) | 83 |
| FspBI | CTAG | 2 cut(s) | 408, 550 |
| GlaI | GCGC | 2 cut(s) | 24, 454 |
| GluI | GCNGC | 1 cut(s) | 83 |
| HaeIII | GGCC | 1 cut(s) | 222 |
| HgaI | GACGC | 1 cut(s) | 29 |
| HhaI | GCGC | 2 cut(s) | 25, 455 |
| Hin1II | CATG | 3 cut(s) | 16, 344, 361 |
| Hin6I | GCGC | 2 cut(s) | 23, 453 |
| HinP1I | GCGC | 2 cut(s) | 23, 453 |
| HinfI | GANTC | 2 cut(s) | 104, 256 |
| Hpy188I | TCNGA | 3 cut(s) | 184, 207, 435 |
| Hpy188III | TCNNGA | 3 cut(s) | 101, 116, 341 |
| HpyAV | CCTTC | 2 cut(s) | 277, 532 |
| HpyCH4IV | ACGT | 2 cut(s) | 325, 363 |
| HpyCH4V | TGCA | 2 cut(s) | 320, 471 |
| HpyF3I | CTNAG | 2 cut(s) | 423, 486 |
| HpySE526I | ACGT | 2 cut(s) | 325, 363 |
| Hsp92II | CATG | 3 cut(s) | 16, 344, 361 |
| HspAI | GCGC | 2 cut(s) | 23, 453 |
| LguI | GCTCTTC | 1 cut(s) | 195 |
| LmnI | GCTCC | 1 cut(s) | 30 |
| LpnPI | CCDG | 3 cut(s) | 296, 306, 497 |
| Lsp1109I | GCAGC | 1 cut(s) | 94 |
| LweI | GCATC | 1 cut(s) | 458 |
| MaeI | CTAG | 2 cut(s) | 408, 550 |
| MaeII | ACGT | 2 cut(s) | 325, 363 |
| MaeIII | GTNAC | 1 cut(s) | 101 |
| MboII | GAAGA | 4 cut(s) | 62, 182, 265, 406 |
| MhlI | GDGCHC | 1 cut(s) | 348 |
| MlsI | TGGCCA | 1 cut(s) | 222 |
| MluCI | AATT | 4 cut(s) | 178, 298, 498, 543 |
| MluNI | TGGCCA | 1 cut(s) | 222 |
| MlyI | GAGTC | 2 cut(s) | 98, 250 |
| MnlI | CCTC | 6 cut(s) | 40, 50, 152, 458, 466, 528 |
| Mox20I | TGGCCA | 1 cut(s) | 222 |
| MroXI | GAANNNNTTC | 1 cut(s) | 189 |
| MscI | TGGCCA | 1 cut(s) | 222 |
| MseI | TTAA | 1 cut(s) | 249 |
| MslI | CAYNNNNRTG | 1 cut(s) | 15 |
| Msp20I | TGGCCA | 1 cut(s) | 222 |
| Mva1269I | GAATGC | 1 cut(s) | 322 |
| MvnI | CGCG | 2 cut(s) | 23, 453 |
| NlaIII | CATG | 3 cut(s) | 16, 344, 361 |
| NlaIV | GGNNCC | 1 cut(s) | 355 |
| NmuCI | GTSAC | 1 cut(s) | 101 |
| PagI | TCATGA | 1 cut(s) | 340 |
| PciSI | GCTCTTC | 1 cut(s) | 195 |
| PctI | GAATGC | 1 cut(s) | 322 |
| PdmI | GAANNNNTTC | 1 cut(s) | 189 |
| PkrI | GCNGC | 1 cut(s) | 84 |
| PleI | GAGTC | 2 cut(s) | 98, 250 |
| PpsI | GAGTC | 2 cut(s) | 98, 250 |
| PsiI | TTATAA | 1 cut(s) | 177 |
| Psp124BI | GAGCTC | 1 cut(s) | 348 |
| PspN4I | GGNNCC | 1 cut(s) | 355 |
| RseI | CAYNNNNRTG | 1 cut(s) | 15 |
| SacI | GAGCTC | 1 cut(s) | 348 |
| SapI | GCTCTTC | 1 cut(s) | 195 |
| SaqAI | TTAA | 1 cut(s) | 249 |
| SatI | GCNGC | 1 cut(s) | 83 |
| SchI | GAGTC | 2 cut(s) | 98, 250 |
| SduI | GDGCHC | 1 cut(s) | 348 |
| SfaNI | GCATC | 1 cut(s) | 458 |
| SfcI | CTRYAG | 1 cut(s) | 445 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 15 |
| SmlI | CTYRAG | 1 cut(s) | 77 |
| SmoI | CTYRAG | 1 cut(s) | 77 |
| Sse9I | AATT | 4 cut(s) | 178, 298, 498, 543 |
| SsiI | CCGC | 1 cut(s) | 145 |
| SspI | AATATT | 1 cut(s) | 385 |
| SspMI | CTAG | 2 cut(s) | 408, 550 |
| SstI | GAGCTC | 1 cut(s) | 348 |
| TaiI | ACGT | 2 cut(s) | 328, 366 |
| TaqI | TCGA | 1 cut(s) | 516 |
| TasI | AATT | 4 cut(s) | 178, 298, 498, 543 |
| Tru1I | TTAA | 1 cut(s) | 249 |
| Tru9I | TTAA | 1 cut(s) | 249 |
| TseFI | GTSAC | 1 cut(s) | 101 |
| TseI | GCWGC | 1 cut(s) | 82 |
| Tsp45I | GTSAC | 1 cut(s) | 101 |
| TspDTI | ATGAA | 4 cut(s) | 29, 182, 329, 374 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 44 |
| XapI | RAATTY | 1 cut(s) | 543 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 63 |
| XmnI | GAANNNNTTC | 1 cut(s) | 189 |
| XspI | CTAG | 2 cut(s) | 408, 550 |