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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 270 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 381 |
| AccBSI | CCGCTC | 2 cut(s) | 346, 428 |
| AciI | CCGC | 3 cut(s) | 346, 394, 428 |
| AclWI | GGATC | 1 cut(s) | 515 |
| AcoI | YGGCCR | 1 cut(s) | 562 |
| AcsI | RAATTY | 1 cut(s) | 310 |
| AcvI | CACGTG | 1 cut(s) | 437 |
| AfaI | GTAC | 1 cut(s) | 26 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 332, 333, 403 |
| AgsI | TTSAA | 8 cut(s) | 112, 119, 148, 194, 201, 230, 276, 302 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 148, 230 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 60, 92 |
| AluBI | AGCT | 1 cut(s) | 158 |
| AluI | AGCT | 1 cut(s) | 158 |
| Alw21I | GWGCWC | 1 cut(s) | 436 |
| AlwI | GGATC | 1 cut(s) | 515 |
| AoxI | GGCC | 3 cut(s) | 490, 562, 570 |
| ApoI | RAATTY | 1 cut(s) | 310 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 644 |
| AspLEI | GCGC | 1 cut(s) | 64 |
| BauI | CACGAG | 1 cut(s) | 257 |
| BbrPI | CACGTG | 1 cut(s) | 437 |
| Bbv12I | GWGCWC | 1 cut(s) | 436 |
| BceAI | ACGGC | 1 cut(s) | 577 |
| BciVI | GTATCC | 1 cut(s) | 85 |
| BfaI | CTAG | 2 cut(s) | 45, 670 |
| BfmI | CTRYAG | 2 cut(s) | 153, 282 |
| BfuI | GTATCC | 1 cut(s) | 85 |
| BglII | AGATCT | 1 cut(s) | 604 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 148, 230 |
| BmiI | GGNNCC | 1 cut(s) | 350 |
| BmsI | GCATC | 2 cut(s) | 31, 653 |
| BsaAI | YACGTR | 1 cut(s) | 437 |
| BsaBI | GATNNNNATC | 1 cut(s) | 603 |
| BsaJI | CCNNGG | 3 cut(s) | 454, 502, 631 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 451, 481 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 332, 333, 403 |
| Bse8I | GATNNNNATC | 1 cut(s) | 603 |
| BseDI | CCNNGG | 3 cut(s) | 454, 502, 631 |
| BseGI | GGATG | 2 cut(s) | 46, 604 |
| BseJI | GATNNNNATC | 1 cut(s) | 603 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 332, 333, 403 |
| BseRI | GAGGAG | 1 cut(s) | 89 |
| BshFI | GGCC | 3 cut(s) | 492, 564, 572 |
| BsiHKAI | GWGCWC | 1 cut(s) | 436 |
| BslFI | GGGAC | 2 cut(s) | 218, 378 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 332, 333, 403 |
| BsmFI | GGGAC | 2 cut(s) | 218, 378 |
| BsnI | GGCC | 3 cut(s) | 492, 564, 572 |
| Bsp1286I | GDGCHC | 1 cut(s) | 436 |
| Bsp143I | GATC | 2 cut(s) | 507, 604 |
| BspACI | CCGC | 3 cut(s) | 346, 394, 428 |
| BspANI | GGCC | 3 cut(s) | 492, 564, 572 |
| BspLI | GGNNCC | 1 cut(s) | 350 |
| BspPI | GGATC | 1 cut(s) | 515 |
| BspQI | GCTCTTC | 1 cut(s) | 63 |
| BsrBI | CCGCTC | 2 cut(s) | 346, 428 |
| BssECI | CCNNGG | 3 cut(s) | 454, 502, 631 |
| BssMI | GATC | 2 cut(s) | 507, 604 |
| BssSI | CACGAG | 1 cut(s) | 257 |
| Bst2BI | CACGAG | 1 cut(s) | 257 |
| Bst4CI | ACNGT | 1 cut(s) | 455 |
| Bst6I | CTCTTC | 1 cut(s) | 63 |
| BstBAI | YACGTR | 1 cut(s) | 437 |
| BstDEI | CTNAG | 1 cut(s) | 291 |
| BstDSI | CCRYGG | 1 cut(s) | 454 |
| BstF5I | GGATG | 2 cut(s) | 46, 604 |
| BstHHI | GCGC | 1 cut(s) | 64 |
| BstKTI | GATC | 2 cut(s) | 510, 607 |
| BstMBI | GATC | 2 cut(s) | 507, 604 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 70, 447, 498, 578 |
| BstSFI | CTRYAG | 2 cut(s) | 153, 282 |
| BstX2I | RGATCY | 1 cut(s) | 604 |
| BstYI | RGATCY | 1 cut(s) | 604 |
| BsuI | GTATCC | 1 cut(s) | 85 |
| BsuRI | GGCC | 3 cut(s) | 492, 564, 572 |
| BtgI | CCRYGG | 1 cut(s) | 454 |
| BtsCI | GGATG | 2 cut(s) | 46, 604 |
| CfoI | GCGC | 1 cut(s) | 64 |
| Csp6I | GTAC | 1 cut(s) | 25 |
| CviAII | CATG | 2 cut(s) | 28, 245 |
| CviJI | RGCY | 7 cut(s) | 158, 450, 492, 501, 564, 572, 630 |
| CviKI_1 | RGCY | 7 cut(s) | 158, 450, 492, 501, 564, 572, 630 |
| CviQI | GTAC | 1 cut(s) | 25 |
| DdeI | CTNAG | 1 cut(s) | 291 |
| DpnI | GATC | 2 cut(s) | 509, 606 |
| DpnII | GATC | 2 cut(s) | 507, 604 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 381 |
| DriI | GACNNNNNGTC | 2 cut(s) | 148, 230 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 381 |
| EaeI | YGGCCR | 1 cut(s) | 562 |
| Eam1104I | CTCTTC | 1 cut(s) | 63 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 148, 230 |
| EarI | CTCTTC | 1 cut(s) | 63 |
| Eco72I | CACGTG | 1 cut(s) | 437 |
| FaeI | CATG | 2 cut(s) | 31, 248 |
| FaqI | GGGAC | 2 cut(s) | 218, 378 |
| FatI | CATG | 2 cut(s) | 27, 244 |
| FauI | CCCGC | 1 cut(s) | 421 |
| FokI | GGATG | 2 cut(s) | 53, 611 |
| FspBI | CTAG | 2 cut(s) | 45, 670 |
| GlaI | GCGC | 1 cut(s) | 63 |
| HaeIII | GGCC | 3 cut(s) | 492, 564, 572 |
| HhaI | GCGC | 1 cut(s) | 64 |
| Hin1II | CATG | 2 cut(s) | 31, 248 |
| Hin6I | GCGC | 1 cut(s) | 62 |
| HinP1I | GCGC | 1 cut(s) | 62 |
| HinfI | GANTC | 2 cut(s) | 135, 217 |
| Hpy188I | TCNGA | 4 cut(s) | 17, 172, 478, 609 |
| Hpy188III | TCNNGA | 4 cut(s) | 89, 259, 302, 529 |
| HpyAV | CCTTC | 4 cut(s) | 401, 535, 562, 630 |
| HpyCH4III | ACNGT | 1 cut(s) | 455 |
| HpyCH4IV | ACGT | 2 cut(s) | 376, 436 |
| HpyCH4V | TGCA | 2 cut(s) | 323, 581 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 70, 447, 498, 578 |
| HpyF3I | CTNAG | 1 cut(s) | 291 |
| HpySE526I | ACGT | 2 cut(s) | 376, 436 |
| Hsp92II | CATG | 2 cut(s) | 31, 248 |
| HspAI | GCGC | 1 cut(s) | 62 |
| Kzo9I | GATC | 2 cut(s) | 507, 604 |
| LguI | GCTCTTC | 1 cut(s) | 63 |
| LmnI | GCTCC | 3 cut(s) | 343, 425, 431 |
| LpnPI | CCDG | 3 cut(s) | 74, 249, 578 |
| LweI | GCATC | 2 cut(s) | 31, 653 |
| MaeI | CTAG | 2 cut(s) | 45, 670 |
| MaeII | ACGT | 2 cut(s) | 376, 436 |
| MalI | GATC | 2 cut(s) | 509, 606 |
| MbiI | CCGCTC | 2 cut(s) | 346, 428 |
| MboI | GATC | 2 cut(s) | 507, 604 |
| MboII | GAAGA | 2 cut(s) | 80, 274 |
| MfeI | CAATTG | 3 cut(s) | 201, 582, 621 |
| MflI | RGATCY | 1 cut(s) | 604 |
| MhlI | GDGCHC | 1 cut(s) | 436 |
| MluCI | AATT | 8 cut(s) | 50, 166, 201, 265, 271, 310, 582, 621 |
| MroXI | GAANNNNTTC | 1 cut(s) | 644 |
| MseI | TTAA | 1 cut(s) | 315 |
| MunI | CAATTG | 3 cut(s) | 201, 582, 621 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 70, 447, 498, 578 |
| NdeII | GATC | 2 cut(s) | 507, 604 |
| NlaIII | CATG | 2 cut(s) | 31, 248 |
| NlaIV | GGNNCC | 1 cut(s) | 350 |
| NmeAIII | GCCGAG | 3 cut(s) | 468, 527, 656 |
| PciSI | GCTCTTC | 1 cut(s) | 63 |
| PdmI | GAANNNNTTC | 1 cut(s) | 644 |
| PfeI | GAWTC | 2 cut(s) | 135, 217 |
| PmaCI | CACGTG | 1 cut(s) | 437 |
| PmlI | CACGTG | 1 cut(s) | 437 |
| Ppu21I | YACGTR | 1 cut(s) | 437 |
| PsiI | TTATAA | 1 cut(s) | 270 |
| PspCI | CACGTG | 1 cut(s) | 437 |
| PspN4I | GGNNCC | 1 cut(s) | 350 |
| PsuI | RGATCY | 1 cut(s) | 604 |
| RsaI | GTAC | 1 cut(s) | 26 |
| RsaNI | GTAC | 1 cut(s) | 25 |
| SapI | GCTCTTC | 1 cut(s) | 63 |
| SaqAI | TTAA | 1 cut(s) | 315 |
| Sau3AI | GATC | 2 cut(s) | 507, 604 |
| SduI | GDGCHC | 1 cut(s) | 436 |
| SetI | ASST | 5 cut(s) | 160, 379, 439, 592, 660 |
| SfaNI | GCATC | 2 cut(s) | 31, 653 |
| SfcI | CTRYAG | 2 cut(s) | 153, 282 |
| Sse9I | AATT | 8 cut(s) | 50, 166, 201, 265, 271, 310, 582, 621 |
| SsiI | CCGC | 3 cut(s) | 346, 394, 428 |
| SspMI | CTAG | 2 cut(s) | 45, 670 |
| TaaI | ACNGT | 1 cut(s) | 455 |
| TaiI | ACGT | 2 cut(s) | 379, 439 |
| TaqI | TCGA | 3 cut(s) | 66, 530, 661 |
| TasI | AATT | 8 cut(s) | 50, 166, 201, 265, 271, 310, 582, 621 |
| TatI | WGTACW | 1 cut(s) | 24 |
| TfiI | GAWTC | 2 cut(s) | 135, 217 |
| Tru1I | TTAA | 1 cut(s) | 315 |
| Tru9I | TTAA | 1 cut(s) | 315 |
| TspDTI | ATGAA | 1 cut(s) | 548 |
| TspGWI | ACGGA | 1 cut(s) | 387 |
| XapI | RAATTY | 1 cut(s) | 310 |
| XmnI | GAANNNNTTC | 1 cut(s) | 644 |
| XspI | CTAG | 2 cut(s) | 45, 670 |