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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 663 |
| AccBSI | CCGCTC | 1 cut(s) | 628 |
| AccII | CGCG | 1 cut(s) | 603 |
| AciI | CCGC | 4 cut(s) | 79, 619, 628, 697 |
| AclWI | GGATC | 2 cut(s) | 485, 555 |
| AcoI | YGGCCR | 1 cut(s) | 763 |
| AcsI | RAATTY | 1 cut(s) | 362 |
| AdeI | CACNNNGTG | 1 cut(s) | 958 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 614 |
| AgsI | TTSAA | 2 cut(s) | 310, 814 |
| AjiI | CACGTC | 1 cut(s) | 136 |
| AjnI | CCWGG | 1 cut(s) | 129 |
| AluBI | AGCT | 6 cut(s) | 155, 161, 496, 506, 899, 950 |
| AluI | AGCT | 6 cut(s) | 155, 161, 496, 506, 899, 950 |
| Alw21I | GWGCWC | 2 cut(s) | 498, 901 |
| Alw26I | GTCTC | 1 cut(s) | 104 |
| AlwI | GGATC | 2 cut(s) | 485, 555 |
| Ama87I | CYCGRG | 1 cut(s) | 119 |
| AoxI | GGCC | 4 cut(s) | 93, 616, 763, 777 |
| ApeKI | GCWGC | 1 cut(s) | 179 |
| ApoI | RAATTY | 1 cut(s) | 362 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 339 |
| AspLEI | GCGC | 1 cut(s) | 605 |
| AspS9I | GGNCC | 2 cut(s) | 665, 777 |
| AvaI | CYCGRG | 1 cut(s) | 119 |
| AvaII | GGWCC | 1 cut(s) | 665 |
| BalI | TGGCCA | 1 cut(s) | 765 |
| BanII | GRGCYC | 2 cut(s) | 498, 901 |
| BauI | CACGAG | 1 cut(s) | 900 |
| BbsI | GAAGAC | 2 cut(s) | 206, 410 |
| Bbv12I | GWGCWC | 2 cut(s) | 498, 901 |
| BbvI | GCAGC | 1 cut(s) | 191 |
| BccI | CCATC | 3 cut(s) | 276, 430, 804 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 275, 309 |
| BciT130I | CCWGG | 1 cut(s) | 131 |
| BciVI | GTATCC | 1 cut(s) | 640 |
| BcoDI | GTCTC | 1 cut(s) | 104 |
| BfaI | CTAG | 4 cut(s) | 107, 126, 272, 986 |
| BfuI | GTATCC | 1 cut(s) | 640 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 188 |
| BisI | GCNGC | 2 cut(s) | 180, 619 |
| BlsI | GCNGC | 2 cut(s) | 181, 620 |
| Bme1390I | CCNGG | 1 cut(s) | 131 |
| Bme18I | GGWCC | 1 cut(s) | 665 |
| BmeT110I | CYCGRG | 1 cut(s) | 119 |
| BmgBI | CACGTC | 1 cut(s) | 136 |
| BmgT120I | GGNCC | 2 cut(s) | 665, 777 |
| BmiI | GGNNCC | 2 cut(s) | 632, 778 |
| BmrFI | CCNGG | 1 cut(s) | 131 |
| BmsI | GCATC | 1 cut(s) | 94 |
| BpiI | GAAGAC | 2 cut(s) | 206, 410 |
| BpuEI | CTTGAG | 2 cut(s) | 74, 141 |
| Bsa29I | ATCGAT | 1 cut(s) | 459 |
| BsaJI | CCNNGG | 1 cut(s) | 564 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 614 |
| Bse1I | ACTGG | 1 cut(s) | 49 |
| BseBI | CCWGG | 1 cut(s) | 131 |
| BseCI | ATCGAT | 1 cut(s) | 459 |
| BseDI | CCNNGG | 1 cut(s) | 564 |
| BseGI | GGATG | 1 cut(s) | 534 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 614 |
| BseMII | CTCAG | 1 cut(s) | 345 |
| BseNI | ACTGG | 1 cut(s) | 49 |
| BseXI | GCAGC | 1 cut(s) | 191 |
| Bsh1236I | CGCG | 1 cut(s) | 603 |
| BshFI | GGCC | 4 cut(s) | 95, 618, 765, 779 |
| BshVI | ATCGAT | 1 cut(s) | 459 |
| BsiHKAI | GWGCWC | 2 cut(s) | 498, 901 |
| BsiHKCI | CYCGRG | 1 cut(s) | 119 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 614 |
| BsmAI | GTCTC | 1 cut(s) | 104 |
| BsmBI | CGTCTC | 1 cut(s) | 104 |
| BsnI | GGCC | 4 cut(s) | 95, 618, 765, 779 |
| BsoBI | CYCGRG | 1 cut(s) | 119 |
| Bsp1286I | GDGCHC | 2 cut(s) | 498, 901 |
| Bsp143I | GATC | 5 cut(s) | 378, 477, 560, 970, 982 |
| Bsp19I | CCATGG | 1 cut(s) | 564 |
| BspACI | CCGC | 4 cut(s) | 79, 619, 628, 697 |
| BspANI | GGCC | 4 cut(s) | 95, 618, 765, 779 |
| BspCNI | CTCAG | 1 cut(s) | 344 |
| BspDI | ATCGAT | 1 cut(s) | 459 |
| BspFNI | CGCG | 1 cut(s) | 603 |
| BspHI | TCATGA | 1 cut(s) | 490 |
| BspLI | GGNNCC | 2 cut(s) | 632, 778 |
| BspPI | GGATC | 2 cut(s) | 485, 555 |
| BsrBI | CCGCTC | 1 cut(s) | 628 |
| BsrI | ACTGG | 1 cut(s) | 49 |
| BssECI | CCNNGG | 1 cut(s) | 564 |
| BssMI | GATC | 5 cut(s) | 378, 477, 560, 970, 982 |
| BssSI | CACGAG | 1 cut(s) | 900 |
| BssT1I | CCWWGG | 1 cut(s) | 564 |
| Bst2BI | CACGAG | 1 cut(s) | 900 |
| Bst2UI | CCWGG | 1 cut(s) | 131 |
| Bst4CI | ACNGT | 1 cut(s) | 145 |
| Bst6I | CTCTTC | 1 cut(s) | 718 |
| BstC8I | GCNNGC | 2 cut(s) | 83, 153 |
| BstDEI | CTNAG | 5 cut(s) | 184, 331, 444, 641, 789 |
| BstDSI | CCRYGG | 1 cut(s) | 564 |
| BstEII | GGTNACC | 1 cut(s) | 692 |
| BstF5I | GGATG | 1 cut(s) | 534 |
| BstFNI | CGCG | 1 cut(s) | 603 |
| BstHHI | GCGC | 1 cut(s) | 605 |
| BstKTI | GATC | 5 cut(s) | 381, 480, 563, 973, 985 |
| BstMAI | GTCTC | 1 cut(s) | 104 |
| BstMBI | GATC | 5 cut(s) | 378, 477, 560, 970, 982 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 167, 176, 188, 881, 947 |
| BstNI | CCWGG | 1 cut(s) | 131 |
| BstPI | GGTNACC | 1 cut(s) | 692 |
| BstSCI | CCNGG | 1 cut(s) | 129 |
| BstUI | CGCG | 1 cut(s) | 603 |
| BstV1I | GCAGC | 1 cut(s) | 191 |
| BstV2I | GAAGAC | 2 cut(s) | 206, 410 |
| BstX2I | RGATCY | 1 cut(s) | 560 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 773 |
| BstYI | RGATCY | 1 cut(s) | 560 |
| Bsu15I | ATCGAT | 1 cut(s) | 459 |
| BsuI | GTATCC | 1 cut(s) | 640 |
| BsuRI | GGCC | 4 cut(s) | 95, 618, 765, 779 |
| BsuTUI | ATCGAT | 1 cut(s) | 459 |
| BtgI | CCRYGG | 1 cut(s) | 564 |
| BtgZI | GCGATG | 2 cut(s) | 404, 901 |
| BtrI | CACGTC | 1 cut(s) | 136 |
| BtsCI | GGATG | 1 cut(s) | 534 |
| Cac8I | GCNNGC | 2 cut(s) | 83, 153 |
| CciI | TCATGA | 1 cut(s) | 490 |
| CfoI | GCGC | 1 cut(s) | 605 |
| Cfr13I | GGNCC | 2 cut(s) | 665, 777 |
| ClaI | ATCGAT | 1 cut(s) | 459 |
| CviAII | CATG | 5 cut(s) | 491, 527, 565, 734, 767 |
| DdeI | CTNAG | 5 cut(s) | 184, 331, 444, 641, 789 |
| DpnI | GATC | 5 cut(s) | 380, 479, 562, 972, 984 |
| DpnII | GATC | 5 cut(s) | 378, 477, 560, 970, 982 |
| DraIII | CACNNNGTG | 1 cut(s) | 958 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 663 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 663 |
| EaeI | YGGCCR | 1 cut(s) | 763 |
| Eam1104I | CTCTTC | 1 cut(s) | 718 |
| EarI | CTCTTC | 1 cut(s) | 718 |
| EciI | GGCGGA | 1 cut(s) | 68 |
| Ecl136II | GAGCTC | 2 cut(s) | 496, 899 |
| Eco130I | CCWWGG | 1 cut(s) | 564 |
| Eco24I | GRGCYC | 2 cut(s) | 498, 901 |
| Eco32I | GATATC | 1 cut(s) | 56 |
| Eco47I | GGWCC | 1 cut(s) | 665 |
| Eco53kI | GAGCTC | 2 cut(s) | 496, 899 |
| Eco88I | CYCGRG | 1 cut(s) | 119 |
| Eco91I | GGTNACC | 1 cut(s) | 692 |
| EcoICRI | GAGCTC | 2 cut(s) | 496, 899 |
| EcoO65I | GGTNACC | 1 cut(s) | 692 |
| EcoRI | GAATTC | 1 cut(s) | 362 |
| EcoRII | CCWGG | 1 cut(s) | 129 |
| EcoRV | GATATC | 1 cut(s) | 56 |
| EcoT14I | CCWWGG | 1 cut(s) | 564 |
| EcoT38I | GRGCYC | 2 cut(s) | 498, 901 |
| ErhI | CCWWGG | 1 cut(s) | 564 |
| Esp3I | CGTCTC | 1 cut(s) | 104 |
| FaeI | CATG | 5 cut(s) | 494, 530, 568, 737, 770 |
| FatI | CATG | 5 cut(s) | 490, 526, 564, 733, 766 |
| Fnu4HI | GCNGC | 2 cut(s) | 180, 619 |
| FokI | GGATG | 1 cut(s) | 521 |
| FriOI | GRGCYC | 2 cut(s) | 498, 901 |
| Fsp4HI | GCNGC | 2 cut(s) | 180, 619 |
| FspBI | CTAG | 4 cut(s) | 107, 126, 272, 986 |
| GlaI | GCGC | 1 cut(s) | 604 |
| GluI | GCNGC | 2 cut(s) | 180, 619 |
| HaeIII | GGCC | 4 cut(s) | 95, 618, 765, 779 |
| HhaI | GCGC | 1 cut(s) | 605 |
| Hin1II | CATG | 5 cut(s) | 494, 530, 568, 737, 770 |
| Hin6I | GCGC | 1 cut(s) | 603 |
| HinP1I | GCGC | 1 cut(s) | 603 |
| HincII | GTYRAC | 1 cut(s) | 731 |
| HindII | GTYRAC | 1 cut(s) | 731 |
| HindIII | AAGCTT | 1 cut(s) | 159 |
| HinfI | GANTC | 5 cut(s) | 102, 115, 254, 406, 587 |
| Hpy166II | GTNNAC | 1 cut(s) | 731 |
| Hpy188I | TCNGA | 2 cut(s) | 334, 586 |
| Hpy188III | TCNNGA | 8 cut(s) | 119, 251, 266, 491, 858, 902, 974, 986 |
| Hpy8I | GTNNAC | 1 cut(s) | 731 |
| HpyAV | CCTTC | 4 cut(s) | 203, 302, 427, 683 |
| HpyCH4III | ACNGT | 1 cut(s) | 145 |
| HpyCH4IV | ACGT | 2 cut(s) | 135, 658 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 167, 176, 188, 881, 947 |
| HpyF3I | CTNAG | 5 cut(s) | 184, 331, 444, 641, 789 |
| HpySE526I | ACGT | 2 cut(s) | 135, 658 |
| Hsp92II | CATG | 5 cut(s) | 494, 530, 568, 737, 770 |
| HspAI | GCGC | 1 cut(s) | 603 |
| Kzo9I | GATC | 5 cut(s) | 378, 477, 560, 970, 982 |
| LmnI | GCTCC | 3 cut(s) | 34, 503, 610 |
| Lsp1109I | GCAGC | 1 cut(s) | 191 |
| LweI | GCATC | 1 cut(s) | 94 |
| MaeI | CTAG | 4 cut(s) | 107, 126, 272, 986 |
| MaeII | ACGT | 2 cut(s) | 135, 658 |
| MaeIII | GTNAC | 4 cut(s) | 5, 251, 439, 692 |
| MalI | GATC | 5 cut(s) | 380, 479, 562, 972, 984 |
| MbiI | CCGCTC | 1 cut(s) | 628 |
| MboI | GATC | 5 cut(s) | 378, 477, 560, 970, 982 |
| MboII | GAAGA | 7 cut(s) | 211, 241, 415, 735, 917, 980, 989 |
| MflI | RGATCY | 1 cut(s) | 560 |
| MhlI | GDGCHC | 2 cut(s) | 498, 901 |
| MlsI | TGGCCA | 1 cut(s) | 765 |
| MluCI | AATT | 4 cut(s) | 17, 362, 553, 592 |
| MluNI | TGGCCA | 1 cut(s) | 765 |
| MlyI | GAGTC | 2 cut(s) | 248, 400 |
| MnlI | CCTC | 7 cut(s) | 181, 608, 719, 739, 743, 769, 831 |
| Mox20I | TGGCCA | 1 cut(s) | 765 |
| MroXI | GAANNNNTTC | 1 cut(s) | 339 |
| MscI | TGGCCA | 1 cut(s) | 765 |
| MseI | TTAA | 5 cut(s) | 147, 321, 348, 356, 837 |
| MslI | CAYNNNNRTG | 2 cut(s) | 771, 801 |
| Msp20I | TGGCCA | 1 cut(s) | 765 |
| MspR9I | CCNGG | 1 cut(s) | 131 |
| MvaI | CCWGG | 1 cut(s) | 131 |
| MvnI | CGCG | 1 cut(s) | 603 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 167, 176, 188, 881, 947 |
| NcoI | CCATGG | 1 cut(s) | 564 |
| NdeII | GATC | 5 cut(s) | 378, 477, 560, 970, 982 |
| NlaIII | CATG | 5 cut(s) | 494, 530, 568, 737, 770 |
| NlaIV | GGNNCC | 2 cut(s) | 632, 778 |
| NmuCI | GTSAC | 1 cut(s) | 251 |
| PaeR7I | CTCGAG | 1 cut(s) | 119 |
| PagI | TCATGA | 1 cut(s) | 490 |
| PdmI | GAANNNNTTC | 1 cut(s) | 339 |
| PfeI | GAWTC | 3 cut(s) | 102, 115, 587 |
| PkrI | GCNGC | 2 cut(s) | 181, 620 |
| PleI | GAGTC | 2 cut(s) | 248, 400 |
| PpsI | GAGTC | 2 cut(s) | 248, 400 |
| Psp124BI | GAGCTC | 2 cut(s) | 498, 901 |
| Psp6I | CCWGG | 1 cut(s) | 129 |
| PspEI | GGTNACC | 1 cut(s) | 692 |
| PspGI | CCWGG | 1 cut(s) | 129 |
| PspN4I | GGNNCC | 2 cut(s) | 632, 778 |
| PspPI | GGNCC | 2 cut(s) | 665, 777 |
| PsuI | RGATCY | 1 cut(s) | 560 |
| RseI | CAYNNNNRTG | 2 cut(s) | 771, 801 |
| SacI | GAGCTC | 2 cut(s) | 498, 901 |
| SaqAI | TTAA | 5 cut(s) | 147, 321, 348, 356, 837 |
| SatI | GCNGC | 2 cut(s) | 180, 619 |
| Sau3AI | GATC | 5 cut(s) | 378, 477, 560, 970, 982 |
| Sau96I | GGNCC | 2 cut(s) | 665, 777 |
| SchI | GAGTC | 2 cut(s) | 248, 400 |
| ScrFI | CCNGG | 1 cut(s) | 131 |
| SduI | GDGCHC | 2 cut(s) | 498, 901 |
| SfaNI | GCATC | 1 cut(s) | 94 |
| Sfr274I | CTCGAG | 1 cut(s) | 119 |
| SinI | GGWCC | 1 cut(s) | 665 |
| SlaI | CTCGAG | 1 cut(s) | 119 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 771, 801 |
| SmlI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| SmoI | CTYRAG | 3 cut(s) | 89, 119, 156 |
| Sse9I | AATT | 4 cut(s) | 17, 362, 553, 592 |
| SsiI | CCGC | 4 cut(s) | 79, 619, 628, 697 |
| SspMI | CTAG | 4 cut(s) | 107, 126, 272, 986 |
| SstI | GAGCTC | 2 cut(s) | 498, 901 |
| StyD4I | CCNGG | 1 cut(s) | 129 |
| StyI | CCWWGG | 1 cut(s) | 564 |
| TaaI | ACNGT | 1 cut(s) | 145 |
| TaiI | ACGT | 2 cut(s) | 138, 661 |
| TaqI | TCGA | 4 cut(s) | 120, 227, 459, 859 |
| TasI | AATT | 4 cut(s) | 17, 362, 553, 592 |
| TauI | GCSGC | 1 cut(s) | 621 |
| TfiI | GAWTC | 3 cut(s) | 102, 115, 587 |
| Tru1I | TTAA | 5 cut(s) | 147, 321, 348, 356, 837 |
| Tru9I | TTAA | 5 cut(s) | 147, 321, 348, 356, 837 |
| TseFI | GTSAC | 1 cut(s) | 251 |
| TseI | GCWGC | 1 cut(s) | 179 |
| Tsp45I | GTSAC | 1 cut(s) | 251 |
| TspDTI | ATGAA | 2 cut(s) | 479, 524 |
| TspGWI | ACGGA | 2 cut(s) | 21, 490 |
| VpaK11BI | GGWCC | 1 cut(s) | 665 |
| XapI | RAATTY | 1 cut(s) | 362 |
| XbaI | TCTAGA | 1 cut(s) | 985 |
| XhoI | CTCGAG | 1 cut(s) | 119 |
| XmnI | GAANNNNTTC | 1 cut(s) | 339 |
| XspI | CTAG | 4 cut(s) | 107, 126, 272, 986 |